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At least 955 records · Page 53

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

Diffraction (X-ray, neutron and electron) and electron cryo-microscopy are powerful methods to determine three-dimensional macromolecular structures, which are required to understand biological processes and to develop new therapeutics against diseases. The overall structure-solution workflow is similar for these techniques, but nuances exist because the properties of the reduced experimental data are different. Software tools for structure determination should therefore be tailored for each method. Phenix is a comprehensive software package for macromolecular structure determination that handles data from any of these techniques. Tasks performed with Phenix include data-quality assessment, map improvement, model building, the validation/rebuilding/refinement cycle and deposition. Each tool caters to the type of experimental data. The design of Phenix emphasizes the automation of procedures, where possible, to minimize repetitive and time-consuming manual tasks, while default parameters are chosen to encourage best practice. A graphical user interface provides access to many command-line features of Phenix and streamlines the transition between programs, project tracking and re-running of previous tasks.

59 BASIC BIOLOGICAL SCIENCES↗

Chemical signature characterization with hyperspectral imagery: novel deep learning model architectures and physically-motivated data augmentation techniques

The high spectral resolution afforded by Hyperspectral Imaging (HSI) sensors is poised to bring unprecedented advancements to signature characterization applications. Thus far, much of the research in the machine learning field devoted to HSI applications has focused on a few specific tasks like land-use land-cover classification. In land classification tasks, spatial information is very important, and model architectures are often designed to leverage spatial contexts. However, it is unclear how well these spatially-tuned models will translate to tasks where spectral information is critical, like the detection and characterization of chemicals. In this work, we compare spectral models (inputs are 1D spectra) and spatial-spectral models (inputs are 3D cubes) in the context of predicting chemical concentration maps. We find that spatial-spectral models perform the best, though we find a wide range in performance across the different architectures tested. Additionally, we find that model performance is impacted by the availability of training data, particularly in scenarios where the training data doesn't fully capture the true variance of real-world conditions. We find that data augmentation can help mitigate sparse coverage of observed parameter space (e.g., seasonal or geographic variability in ground cover), and present augmentation strategies that are tailored to hyperspectral data.

• Artificial intelligence (AI) / machine learning ↗

The Trillion Pixel GeoAI Challenge Workshop

Rapid innovations in satellite and airborne remote sensing capabilities holds the promise of collecting high-resolution imagery with daily, even hourly cadence across the entire planet. Availability of such earth observation data streams at varying spatial and temporal scales, coupled with astonishing progress in AI and transformational advances in high performance computing bring into view the possibility of mapping and interpreting the surface of our planet at unprecedented detail. The implications of such capability for science, technology, policy, and security are far reaching. Moreover, even at a modest 5m resolution, 100 trillion pixels will describe the surface of the Earth every day. Consequently, monitoring the pulse of our planet will entail collecting, refining, analyzing, and curating those 100 trillion pixels within a 24-hour period. That is a challenge with unknown solutions as of today’s advances and therefore serves as a key motivation for this workshop. The GEOINT and AI communities have a unique opportunity to enable detailed monitoring the pulse of our planet and obtain new insights into how humans occupy, interact with, and alter the surface of the Earth over time. From a science and technology standpoint, this is a modern-day moonshot that presents numerous challenges particularly related to scaling the analysis to every pixel covering the planet. The challenge of making sense of all these pixels in a timely fashion include image processing at scale, selective analysis of only the pixels that matter, generalizing AI models across heterogeneous locations, computing on hardware that is memory constrained, and deploying automated feature extraction on edge devices. The designing of capable GeoAI workflows and data pipelines will require interdisciplinary efforts and partnerships. The Trillion Pixel Challenge for GeoAI workshop was is promoted as a first community effort to discuss priority research and development directions and to establish the partnerships and collaborations needed to make progress on critical scientific and operational applications from local to regional to planet scale.

97 MATHEMATICS AND COMPUTING↗

Solar Field Layout and Aimpoint Strategy Optimization

The existing methods that determine heliostat aiming strategies for concentrating solar power (CSP) central receiver plants typically use heuristics and/or are computationally expensive, and they lack flexibility for different desired flux profiles and receiver geometries. Because of the interaction between layout and aimpoint strategy, considering the former without accounting for the latter may yield solutions with superfluous heliostats that cannot be used efficiently without compromising receiver flux constraints. To that end, we develop a software decision tool that uses innovative optimization methods to both optimize aimpoint strategies and improve candidate layouts for the solar collection field of a CSP central receiver plant. A CSP plant’s effectiveness relies on the optical efficiency of the solar field, which may be limited by losses due to (i) the cosine effect, (ii) atmospheric attenuation, (iii) interference (i.e., shading and blocking) between heliostats, (iv) spillage as a result of heliostat positioning and geometry, and (iv) some heliostats’ inability to direct irradiance to the receiver without damage due to excessive thermal flux. The goal of this work is to obtain optimized aiming strategies and improved solar field layouts that reduce capital cost and increase field optical efficiency and utilization, while meeting the power requirements of a given CSP receiver design. We formulate the aimpoint optimization problem as a mixed-integer linear programming model, which we then decompose into submodels that we solve in parallel. The decomposition subdivides the solar field into sections, and aimpoint strategies for each section are obtained independently of the others. To improve existing layouts, we develop a utilization-weighted efficiency metric that we use to relocate heliostats to sections of the solar field with similar efficiency and higher utilization. Finally, to connect our software to high-fidelity flux models, we develop a Python application programming interface for SolarPILOT, a mature software package that characterizes solar field performance and generates the heliostat layouts and flux maps that serve as input to our models.

14 SOLAR ENERGY↗

Sustainable Aviation Fuels from 30,000 feet – Scoping Report

A literature review, first principles analysis, and mapping of the airline-fuel infrastructure were performed to reassess the potential for various means of realizing a sustainable aviation sector. The literature review found a plethora of technical methods to make the airline industry net-zero CO 2 but limited work on the emergent barriers to sustainable aviation implementation such as land use, repurposing of fuel refining assets, and airline cost structures. First principles analyses of the energy, land, and costs of three broad net-zero strategies were performed to determine if sustainable aviation is feasible even in the most optimistic scenarios. Those methods were biomass-derived sustainable aviation fuel (SAF), fuel produced from CO 2 captured from the air and H 2 produced from water electrolysis (air-to-fuel: ATF), and offsetting fossil-derived Jet Fuel with carbon dioxide removal from the atmosphere (direct air capture and storage: DACS). Offsetting CO 2 emissions from using fossil Jet Fuel with DACS was found to consume the least energy, require the smallest quantity of land, and be the cheapest option. Replacing Jet Fuel with SAF was found to be only slightly more expensive than DACS but require substantially more land. ATF was found to be the most expensive and energy intensive option, though it did spare land relative to SAF. We found that calls to utilize waste biomass are well-founded, but wastes alone cannot cover the needs of the global airline industry. This means additional land will need to be allocated for biomass cultivation if SAF becomes the primary pathway to sustainable aviation. While differences were found in the performance of different types of biomass, those differences were small relative to differences with ATF and DACS. An analysis of the pricing structure of the airline industry suggests that some of the cost advantage of DACS may be erased by consumer sentiment which could explain why, to-date, the airline industry is focused primarily on SAF and to a lesser extent ATF. Further work is required to estimate the transportation, capital cost, and financing cost implications of greenfield and brownfield sites for SAF, DACS, and ATF. In the final report, we will analyze the potential to retrofit corn ethanol facilities to operate the ethanol-to-jet fuel process in response to decreasing gasoline demand as the electrification of road transport progresses. We will also construct a prioritization of land use to determine whether each net-zero CO 2 aviation pathway can make claim to the land required by their technology.

09 BIOMASS FUELS↗

Data Structure Alchemy

In an increasingly more data-driven world, the project set out to uncover the first principles of data-structure design, chart the immense design space they form, and build automation that can synthesize an optimal structure, or even a whole storage engine, for any given workload, hardware platform, and cost target. Data structures are at the center of every computational system and are directly responsible for its performance. Two core technical thrusts were defined: 1) Mapping design spaces for key data-centric abstractions (filters, hash functions, storage-engine layouts, neural-network topologies, blockchain protocols, image layouts, etc.). 2) Developing search & synthesis algorithms, initially analytical cost models, later neural-guided bi-level optimisers that navigate sextillions of candidate designs in seconds and materialise the best one as ready‐to-run code. This report distills the key insights, accomplishments, and impact.

97 MATHEMATICS AND COMPUTING↗

A volumetric framework for quantum computer benchmarks

We propose a very large family of benchmarks for probing the performance of quantum computers. We call them volumetric benchmarks (VBs) because they generalize IBM's benchmark for measuring quantum volume \cite{Cross18}. The quantum volume benchmark defines a family of square circuits whose depth d and width w are the same. A volumetric benchmark defines a family of rectangular quantum circuits, for which d and w are uncoupled to allow the study of time/space performance trade-offs. Each VB defines a mapping from circuit shapes — ( w , d ) pairs — to test suites C ( w , d ) . A test suite is an ensemble of test circuits that share a common structure. The test suite C for a given circuit shape may be a single circuit C , a specific list of circuits { C 1 … C N } that must all be run, or a large set of possible circuits equipped with a distribution P r ( C ) . The circuits in a given VB share a structure, which is limited only by designers' creativity. We list some known benchmarks, and other circuit families, that fit into the VB framework: several families of random circuits, periodic circuits, and algorithm-inspired circuits. The last ingredient defining a benchmark is a success criterion that defines when a processor is judged to have ``passed'' a given test circuit. We discuss several options. Benchmark data can be analyzed in many ways to extract many properties, but we propose a simple, universal graphical summary of results that illustrates the Pareto frontier of the d vs w trade-off for the processor being benchmarked.

97 MATHEMATICS AND COMPUTING↗

Interface-enhanced conductivities in surfactant-mediated, solution-grown ionic crystalline complexes

Renewable energy is increasingly relying on optimized electrolytes and interfaces. In this work, Tween 20 and sodium chloride are selected as a model system to reveal the effects of surfactants on salt crystallization in the context of ionic conductivity and interface optimization. At a varied crystallization speed and mix ratio, it is demonstrated that the resultant solution-grown ionic crystalline complexes can achieve a highly tunable ion transport with a controllable crystalline interface. X-ray diffraction results rule out the possibility of polymorphism in the NaCl/Tween 20 systems, which further supports the importance of an optimized crystalline network for optimizing permittivity or ionic conductivity. Raman mapping and machine learning techniques are used to perform semantic segmentation on highly heterogeneous NaCl/Tween 20 complexes. Furthermore, FTIR measurements demonstrate that inter- and intra-molecular interactions play critical roles in the formation of these crystals. This work lays a foundation toward future optimization of such complex ion systems for a specific salt or crystallization modifier in energy storage or ion transport applications.

36 MATERIALS SCIENCE↗

Variational Quantum Chemistry Programs in JaqalPaq

We present example quantum chemistry programs written with JaqalPaq, a python meta-programming language used to code in Jaqal (Just Another Quantum Assembly Language). These JaqalPaq algorithms are intended to be run on the Quantum Scientific Computing Open User Testbed (QSCOUT) platform at Sandia National Laboratories. Our exemplars use the variational quantum eigensolver (VQE) quantum algorithm to compute the ground state energies of the H2, HeH+, and LiH molecules. Since the exemplars focus on how to program in JaqalPaq, the calculations of the second-quantized Hamiltonians are performed with the PySCF python package, and the mappings of the fermions to qubits are obtained from the OpenFermion python package. Using the emulator functionality of JaqalPaq, we emulate how these exemplars would be executed on an error-free QSCOUT platform and compare the emulated computation of the bond-dissociation curves for these molecules with their exact forms within the relevant basis.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

RELICS: High-resolution Constraints on the Inner Mass Distribution of the z = 0.83 Merging Cluster RXJ0152.7-1357 from Strong Lensing

Strong gravitational lensing (SL) is a powerful means of mapping the distribution of dark matter. Here, we perform an SL analysis of the prominent X-ray cluster RXJ0152.7-1357 ( z = 0.83, also known as CL0152.7-1357) in Hubble Space Telescope images, taken in the framework of the Reionization Lensing Cluster Survey (RELICS). On top of a previously known z = 3.93 galaxy multiply imaged by RXJ0152.7-1357, for which we observe an additional multiple image, guided by a light-traces-mass approach, we identify seven new sets of multiply imaged background sources lensed by this cluster, spanning the redshift range [1.79–3.93]. A total of 25 multiple images are seen over a small area of ~0.4 arcmin 2 , enabling us to put relatively high-resolution constraints on the inner matter distribution. Although modestly massive, the high degree of substructure, together with its very elongated shape, makes RXJ0152.7-1357 a very efficient lens for its size. This cluster also comprises the third-largest sample of z ~ 6–7 candidates in the RELICS survey. Lastly, we present a comparison of our resulting mass distribution and magnification estimates with those from a Lenstool model. These models are made publicly available through the Mikulski Archive for Space Telescopes.

79 ASTRONOMY AND ASTROPHYSICS↗

CMB/kSZ and Compton-y Maps from 2500 deg 2 of SPT-SZ and Planck Survey Data

Abstract We present component-separated maps of the primary cosmic microwave background/kinematic Sunyaev–Zel’dovich (SZ) amplitude and the thermal SZ Compton- y parameter, created using data from the South Pole Telescope (SPT) and the Planck satellite. These maps, which cover the ∼2500 deg 2 of the southern sky imaged by the SPT-SZ survey, represent a significant improvement over previous such products available in this region by virtue of their higher angular resolution ( 1 .′ 25 for our highest-resolution Compton- y maps) and lower noise at small angular scales. In this work we detail the construction of these maps using linear combination techniques, including our method for limiting the correlation of our lowest-noise Compton- y map products with the cosmic infrared background. We perform a range of validation tests on these data products to test our sky modeling and combination algorithms, and we find good performance in all of these tests. Recognizing the potential utility of these data products for a wide range of astrophysical and cosmological analyses, including studies of the gas properties of galaxies, groups, and clusters, we make these products publicly available at http://pole.uchicago.edu/public/data/sptsz_ymap and on the NASA/LAMBDA website.

79 ASTRONOMY AND ASTROPHYSICS↗

Durability tests of a five centimeter diameter ion thruster system

A modified Hughes SIT-5 system is being tested for durability at the Lewis Research Center. As of October 1, 1972, the thruster subsystem has logged over 8000 hours of operation. The initial 2023 hours were run with a translating screen thrust vector grid. The thruster is currently operating with an electrostatic type vector grid. Profiles and maps taken at widely separated intervals show that performance and operating characteristics have remained essentially constant. Overall efficiency is about 32 percent and power to thrust ratio is 170 watts per millipound at a specific impulse of 2500 seconds. Telescopic examination of the vector grid shows some sputtering erosion due to charge exchange and direct impingement ions.

Nakanishi, S.↗

Precision X-ray telescopes on HEAO-C.

Discussion of precision X-ray telescopes which are to be mounted on HEAO-C aircraft designed to study the structure, energy spectra and transient behavior of specific X-ray objects by the scanning and mapping of the sky. The design features and performance characteristics of the three high-resolution X-ray telescopes and their optical systems are considered. Mission equipment specifications and systems diagrams are appended. The HEAO-C mission is planned for launching by the Shuttle in the late 70s, with the capability of pointing to within one arc minute of X-ray sources for long periods of time.

Dailey, C. C.↗

Automatic photointerpretation for land use management in Minnesota

The author has identified the following significant results. Progress is being made in the areas of sun angle and atmospheric effects on the data and its interpretation. The effort is aimed at correction using only navigation and calendar data needed for satellite operation and derivations from the MSS data. Water estimation of value to land planners and conservationists has been demonstrated with verification of performance by comparison with a concurrent study involving map planimetry, aerial photos, and field-checking. The satellite will provide seasonal and annual coverage with timely information in a way not now feasible by conventional methods. For example, the reference data were obtained using the most recent files, which date back to 1949, and from most recent photography taken in 1968. The calendar time involved was three to four months, which is a reflection on priority pressure on trained manpower available. ERTS-1 data can help relieve this problem by providing the needed information while freeing trained manpower for more appropriate parts of the effort.

Swanlund, G. D.↗

Durability tests of a five-centimeter diameter ion thruster system.

A modified Hughes SIT-5 system is being tested for durability at the Lewis Research Center. As of Oct. 1, 1972, the thruster subsystem has logged over 8000 hours of operation. The initial 2023 hours were run with a translating screen thrust vector grid. The thruster is currently operating with an electrostatic type vector grid. Profiles and maps taken at widely separated intervals show that performance and operating characteristics have remained essentially constant. Overall efficiency is about 32 per cent and power to thrust ratio is 170 watts per millipound at a specific impulse of 2500 seconds. Telescopic examination of the vector grid shows some sputtering erosion due to charge exchange and direct impingement ions. An independent test of the propellant storage and cathode-isolator-vaporizer subsystem has demonstrated good reliability under simulated thruster operating conditions.

Nakanishi, S.↗

Development of remote sensing technology in New Zealand, part 1. Seismotectonic, structural, volcanologic and geomorphic study of New Zealand, part 2. Indigenous forest assessment, part 3. Mapping land use and environmental studies in New Zealand, part 4. New Zealand forest service LANDSAT projects, part 5. Vegetation map and landform map of Aupouri Peninsula, Northland, part 6. Geographical applications of LANDSAT mapping, part 7

The author has identified the following significant results. Inspection of pixels obtained from LANDSAT of New Zealand revealed that not only can ships and their wakes be detected, but that information on the size, state of motion, and direction of movement was inferred by calculating the total number of pixels occupied by the vessel and wake, the orientation of these pixels, and the sum of their radiance values above the background level. Computer enhanced images showing the Waimihia State Forest and much of Kaingaroa State Forest on 22 December 1975 were examined. Most major forest categories were distinguished on LANDSAT imagery. However, the LANDSAT imagery seemed to be most useful for updating and checking existing forest maps, rather than making new maps with many forest categories. Snow studies were performed using two basins: Six Mile Creek and Mt. Robert. The differences in radiance levels indicated that a greater areal snow cover in Six Mile Creek Basin with the effect of lower radiance values from vegetation/snow regions. A comparison of the two visible bands (MSS 4 and 5) demonstrate this difference for the two basins.

Probine, M. C.↗

Alignment and evaluation of the cryogenic corrected infrared astronomical satellite /IRAS/ telescope

Room temperature alignment and evaluation techniques for the Infrared Astronomical Satellite (IRAS) telescope, which has a primary mirror figured to correct for surface distortions and the 2 K operating temperature are discussed. Interferometric cryogenic testing of the 0.6 m, f/1.5 lightweighted beryllium primary mirror at its intended operating temperature reveals surface distortions that can be modeled with Zernike polynomials. With this model, it becomes possible to derive the 'inverse' of the cryowavefront error (ideal cryo mirror) and to figure the cryo correction into the primary mirror using Perkin-Elmer's Computer Controlled Polisher. It is recognized that during room temperature assembly of the system, misalignment of the secondary mirror can introduce additional unwanted aberrations that may cancel or distort the wavefront errors purposely introduced by the cryo figuring. To avoid this possible degradation and to ensure optimum telescope performance, the system Zernike polynomial coefficients and wavefront maps generated from the in-process alignment interferograms are monitored and compared to Zernike coefficients and wavefront maps for the cryo corrected primary mirror.

Harned, N.↗

Land cover change monitoring within the east central Louisiana study site: A case for large area surveys with LANDSAT multispectral scanner data

Results established for four digital procedures developed for characterizing the radiometric changes between multidate LANDSAT spectral data sets into meaningful measures of land cover/use dynamics are documented. Each technique's performance was contrasted against digitized land use change maps, which were produced from contemporaneous, retrospective aerophoto coverage, in a cell by cell comparison over a one half by one degree area in east central Louisiana as a standard for comparison. The four techniques identify from 10.5 to 13.0% loss in area of forestland in a five year period; however, they differ more by how accurately this amount of change is distributed, the need for ancillary ground truth, and amount of usable information that is extractable. All require some method of digitally co-registering the two data sets. All are capable of providing tabular statistics as well as map products. Two are capable of detecting changes and identifying their locations. The other two, in addition to this, provide information to qualify land cover conditions at each end of the study interval.

Burns, G. S.↗