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DOE OSTI2021

Characterizing Long COVID: Deep Phenotype of a Complex Condition

Background: Numerous publications describe the clinical manifestations of post-acute sequelae of SARS-CoV-2 (PASC or "long COVID"), but they are difficult to integrate because of heterogeneous methods and the lack of a standard for denoting the many phenotypic manifestations. Patient-led studies are of particular importance for understanding the natural history of COVID-19, but integration is hampered because they often use different terms to describe the same symptom or condition. This significant disparity in patient versus clinical characterization motivated the proposed ontological approach to specifying manifestations, which will improve capture and integration of future long COVID studies. Methods: The Human Phenotype Ontology (HPO) is a widely used standard for exchange and analysis of phenotypic abnormalities in human disease but has not yet been applied to the analysis of COVID-19. Funding: We identified 303 articles published before April 29, 2021, curated 59 relevant manuscripts that described clinical manifestations in 81 cohorts three weeks or more following acute COVID-19, and mapped 287 unique clinical findings to HPO terms. We present layperson synonyms and definitions that can be used to link patient self-report questionnaires to standard medical terminology. Long COVID clinical manifestations are not assessed consistently across studies, and most manifestations have been reported with a wide range of synonyms by different authors. Across at least 10 cohorts, authors reported 31 unique clinical features corresponding to HPO terms; the most commonly reported feature was Fatigue (median 45.1%) and the least commonly reported was Nausea (median 3.9%), but the reported percentages varied widely between studies. Interpretation: Translating long COVID manifestations into computable HPO terms will improve analysis, data capture, and classification of long COVID patients. If researchers, clinicians, and patients share a common language, then studies can be compared/pooled more effectively. Furthermore, mapping lay terminology to HPO will help patients assist clinicians and researchers in creating phenotypic characterizations that are computationally accessible, thereby improving the stratification, diagnosis, and treatment of long COVID.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2022

Towards Automatic Mapping of Vulnerabilities to Attack Patterns using Large Language Models

With the advent of new devices and applications, cyber attack surface is continuously evolving due to the emergence of new attack techniques and vulnerabilities. Hence, security management tool must assess the cyber risk of an enterprise at regular interval basis through comprehensively identifying associations among attack techniques, weakness, and vulnerabilities. However, existing repositories providing such associations are incomplete (i.e., missing associations), inducing the likelihood of undermining the risk of particular set of attack techniques. Moreover, such associations still rely on manual interpretation, which is slow compared to attack speed and ineffective for the increasing list of vulnerabilities and attack actions. Therefore, there is an urge to develop methodologies for automatically associating vulnerabilities to all relevant attack techniques. In this paper, we present a framework, named VWC-MAP, that can automatically identify all relevant attack techniques of a vulnerability via weakness based on their text descriptions, applying natural language process (NLP) techniques. To achieve that, we present a novel two-tiered classification approach, where the first tier classifies vulnerabilities to weakness, and the second tier classifies weakness to attack techniques. This research has improved the scalability of the current state-of-the-art tool to make vulnerability to weakness mapping significantly faster. Moreover, this paper presents two novel approaches for weakness to attack technique mapping applying Text-to-Text and link prediction techniques. Our experiment results cross-validated through cyber-security experts show that VWC-MAP can associate vulnerabilities to weakness types with 87% accuracy and to new attack patterns with 80% accuracy.

Das, Siddhartha Shankar↗

NASA NTRS1974

Land use mapping and modelling for the Phoenix Quadrangle

The author has identified the following significant results. Changes in the land use in the Phoenix (1:250,000 scale) Quadrangle in Arizona have been mapped using only the images from ERTS-1, tending to verify the utility of a land use classification system proposed for use with ERTS images. Seasonal changes were studied on successive ERTS-1 images, particularly large scale color composite transparencies for August, October, February, and May, and this seasonal variation aided delineation of land use boundaries. Types of equipment used to aid interpretation included color additive viewer, a twenty-power magnifier, a density slicer, and a diazo copy machine. A Zoom Transfer Scope was used for scale and photogrammetric adjustments. Types of changes detected have been: (1) cropland or rangeland developed as new residential areas; (2) rangeland converted to new cropland or to new reservoirs; and (3) possibly new activity by the mining industries. A map of land use previously compiled from air photos was updated in this manner. ERTS-1 images complemented air photos: the photos gave detail on a one-shot basis; the ERTS-1 images provided currency and revealed seasonal variation in vegetation which aided interpretation of land use.

Place, J. L.↗

NASA NTRS1978

The verification of LANDSAT data in the geographical analysis of wetlands in west Tennessee

The reliability of LANDSAT imagery as a medium for identifying, delimiting, monitoring, measuring, and mapping wetlands in west Tennessee was assessed to verify LANDSAT as an accurate, efficient cartographic tool that could be employed by a wide range of users to study wetland dynamics. The verification procedure was based on the visual interpretation and measurement of multispectral imagery. The accuracy testing procedure was predicated on surrogate ground truth data gleaned from medium altitude imagery of the wetlands. Fourteen sites or case study areas were selected from individual 9 x 9 inch photo frames on the aerial photography. These sites were then used as data control calibration parameters for assessing the cartography accuracy of the LANDSAT imagery. An analysis of results obtained from the verification tests indicated that 1:250,000 scale LANDSAT data were the most reliable scale of imagery for visually mapping and measuring wetlands using the area grid technique. The mean areal percentage of accuracy was 93.54 percent (real) and 96.93 percent (absolute). As a test of accuracy, the LANDSAT 1:250,000 scale overall wetland measurements were compared with an area cell mensuration of the swamplands from 1:130,000 scale color infrared U-2 aircraft imagery. The comparative totals substantiated the results from the LANDSAT verification procedure.

Rehder, J.↗

DOE OSTI2020

Characterizing the uppermost 100 m structure of the San Jacinto fault zone southeast of Anza, California, through joint analysis of geological, topographic, seismic and resistivity data

We present results from complementary geological, topographic, seismic and electrical resistivity surveys at the Sagebrush Flat (SGB) site along the Clark fault (CF) strand of the San Jacinto fault zone trifurcation area southeast of Anza, California. Joint interpretation of these data sets, each with unique spatiotemporal sensitivities, allow us to better characterize the shallow (<100 m) fault zone at this structurally complex site. Geological mapping at the surface shows the CF has three main subparallel strands within a <100 m zone with varying degrees of rock damage. These strands intersect units of banded gneiss and tonalite, and various sedimentary units. Near the surface, the weathered but more intact tonalite and gneiss to the southwest have relatively high VP. The low-lying flat sedimentary basins around the two southwestern-most CF strands and elevated damaged gneiss to the northeast have lowest VP <500 m s–1. The high relief of the northeast gneiss unit may in part be explained by its extensive damage and inferred increased relative rock uplift. Resistivity imaging shows the unconsolidated dry basin sediments (maximum >1300 Ohm.m) contrasted against the compacted fine-grained (potentially wet) materials within the CF core and the Bautista Formation (minimum <40 Ohm.m), which is slightly elevated above the flat basins. The inverse relationship between VP (increases) and resistivity (decreases) in the uppermost ~15 m can be characterized as log–log linear with slopes of –2.6 to –4. At depths >30 m, the velocity heterogeneity near the surface merges into larger-scale structures that are generally slower on the northeast side of the CF core compared to the southwest side (as much as ~40 per cent reduction in average VP). A previous study revealed a 20–37 per cent variability in peak ground velocities across the SGB site from local earthquakes. The upper end of that range is associated with the near-surface unconsolidated sedimentary basins and northeast damaged gneiss unit. Preliminary analysis of time-dependent topography mostly shows effects of changing vegetation and anthropogenic activity.

Geochemistry & Geophysics↗

DOE OSTI2020

Photoluminescence, photophysics, and photochemistry of the V B - defect in hexagonal boron nitride

Extensive photochemical and spectroscopic properties of the V B - defect in hexagonal boron nitride are calculated, concluding that the observed photoemission associated with recently observed optically detected magnetic resonance is most likely of (1) 3 E'' → (1) 3 A' 2 origin. Rapid intersystem crossing from the defect's triplet to singlet manifolds explains the observed short excited-state lifetime and very low quantum yield. New experimental results reveal smaller intrinsic spectral bandwidths than previously recognized, interpreted in terms of spectral narrowing and zero-phonon-line shifting induced by the Jahn-Teller effect. Different types of computational methods are applied to map out the complex triplet and singlet defect manifolds, including the doubly ionized formulation of the equation-of-motion coupled-cluster theory that is designed to deal with the open-shell nature of defect states, and mixed quantum-mechanics/molecular-mechanics schemes enabling 5763-atom simulations. Finally, two other energetically feasible spectral assignments from among the singlet and triplet manifolds are considered, but ruled out based on inappropriate photochemical properties.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

NASA NTRS1981

Synoptic thermal and oceanographic parameter distributions in the New York Bight Apex

Concurrent surface water measurements made from a moving oceanographic research vessel were used to calibrate and interpret remotely sensed data collected over a plume in the New York Bight Apex on 23 June 1977. Multiple regression techniques were used to develop equations to map synoptic distributions of chlorophyll a and total suspended matter in the remotely sensed scene. Thermal (which did not have surface calibration values) and water quality parameter distributions indicated a cold mass of water in the Bight Apex with an overflowing nutrient-rich warm water plume that originated in the Sandy Hook Bay and flowed south near the New Jersey shoreline. Data analysis indicates that remotely sensed data may be particularly useful for studying physical and biological processes in the top several metres of surface water at plume boundaries.

Johnson, R. W.↗

NASA NTRS1981

Satellite radar altimeters - Present and future oceanographic capabilities

Satellite radar altimeters have the ability to provide information related to ocean wave heights, wind speed, and currents. The present investigation has the objective to demonstrate the current capabilities and to indicate ways to increase the information content of the altimeter return through the use of wider bandwidth, higher pulse repetition frequencies (PRF), and multibeam. Altimeters aboard Skylab, Geos-3, and Seasat-1 have provided investigators with valuable experience in translating the radar observables into oceanic parameters. Basically, an altimeter transmits a narrow pulse and measures the time interval until the return energy from the ocean surface is received. That direct measure of the satellite altitude can be interpreted in terms of surface topography. Attention is given to altimeter oceanographic measurements, altimeter return pulse characteristics, satellite pointing and surface slopes, the adaptive tracker for terrain mapping, and a multibeam altimeter.

Townsend, W. F.↗

NASA NTRS1993

Apron heights around stepped massifs in the Cydonia Mensae region: Do they record the local paleobathymetry of Oceanus Borealis?

The use of photoclinometry and shadow measurements to determine the basin volume without linking the measurements to a global datum is described. Since the boundary, or shoreline, of the basin cannot be tied to the datum and typically has no useful local relative height to measure, what is needed is a number of measurements of the height of the paleoshorelines distributed across the basin. Photoclinometric profiles are being compiled from Viking Orbiter images of the Cydonia Mensae region, which includes images with high sun elevations, necessary to avoid shadows, and images with low sun elevations, to enable the use of shadow measurements as an independent check, at high resolution (40 to 100 m/pixel). Both asymmetric and symmetric photoclinometric profile models are being used, and the results cross checked with one another to minimize errors. An apron-height map, potentially a paleobathymetric map of part of the margin of Oceanus Borealis, can be compiled from this data to determine whether variations in apron height are consistent with a lacustrine interpretation.

Parker, T. J.↗

NASA NTRS1997

Evaluation of GIS Technology in Assessing and Modeling Land Management Practices

There is an increasing concern of land owners to protect and maintain healthy and sustainable agroecosystems through the implementation of best management practices (BMP). The objectives of this study were: (1) To develop and evaluate the use of a Geographic Information System (GIS) technology for enhancing field-scale management practices; (2) evaluate the use of 2-dimensional displays of the landscape and (3) define spatial classes of variables from interpretation of geostatistical parameters. Soil samples were collected to a depth of 2 m at 15 cm increments. Existing data from topographic, land use, and soil survey maps of the Winfred Thomas Agricultural Research Station were converted to digital format. Additional soils data which included texture, pH, and organic matter were also generated. The digitized parameters were used to create a multilayered field-scale GIS. Two dimensional (2-D) displays of the parameters were generated using the ARC/INFO software. The spatial distribution of the parameters evaluated in both fields were similar which could be attributed to the similarity in vegetation and surface elevation. The ratio of the nugget to total semivariance, expressed as a percentage, was used to assess the degree of spatial variability. The results indicated that most of the parameters were moderate spatially dependent Biophysical constraint maps were generated from the database layers, and used in multiple combination to visualize results of the BMP. Understanding the spatial relationships of physical and chemical parameters that exists within a field should enable land managers to more effectively implement BMP to ensure a safe and sustainable environment.

Archer, F.↗

NASA NTRS1986

Citrus Inventory

Florida's Charlotte County Property Appraiser is using an aerial color infrared mapping system for inventorying citrus trees for valuation purposes. The ACIR system has significantly reduced the time and manpower required for appraisal. Aerial photographs are taken and interpreted by a video system which makes it possible to detect changes from previous years. Potential problems can be identified. KSC's TU Office has awarded a contract to the Citrus Research and Education Center to adapt a prototype system which would automatically count trees and report totals.

Source record↗

NASA NTRS2011

Inversion of Magnetic Measurements of the CHAMP Satellite Over the Pannonian Basin

The Pannonian Basin is a deep intra-continental basin that formed as part of the Alpine orogeny. In order to study the nature of the crustal basement we used the long-wavelength magnetic anomalies acquired by the CHAMP satellite. The anomalies were distributed in a spherical shell, some 107,927 data recorded between January 1 and December 31 of 2008. They covered the Pannonian Basin and its vicinity. These anomaly data were interpolated into a spherical grid of 0.5 x 0.5, at the elevation of 324 km by the Gaussian weight function. The vertical gradient of these total magnetic anomalies was also computed and mapped to the surface of a sphere at 324 km elevation. The former spherical anomaly data at 425 km altitude were downward continued to 324 km. To interpret these data at the elevation of 324 km we used an inversion method. A polygonal prism forward model was used for the inversion. The minimum problem was solved numerically by the Simplex and Simulated annealing methods; a L2 norm in the case of Gaussian distribution parameters and a L1 norm was used in the case of Laplace distribution parameters. We INTERPRET THAT the magnetic anomaly WAS produced by several sources and the effect of the sable magnetization of the exsolution of hemo-ilmenite minerals in the upper crustal metamorphic rocks.

Kis, K. I.↗

NASA NTRS2014

Geologic Mapping of Ejecta Deposits in Oppia Quadrangle, Asteroid (4) Vesta

Oppia Quadrangle Av-10 (288-360 deg E, +/- 22 deg) is a junction of key geologic features that preserve a rough history of Asteroid (4) Vesta and serves as a case study of using geologic mapping to define a relative geologic timescale. Clear filter images, stereo-derived topography, slope maps, and multispectral color-ratio images from the Framing Camera on NASA's Dawn spacecraft served as basemaps to create a geologic map and investigate the spatial and temporal relationships of the local stratigraphy. Geologic mapping reveals the oldest map unit within Av-10 is the cratered highlands terrain which possibly represents original crustal material on Vesta that was then excavated by one or more impacts to form the basin Feralia Planitia. Saturnalia Fossae and Divalia Fossae ridge and trough terrains intersect the wall of Feralia Planitia indicating that this impact basin is older than both the Veneneia and Rheasilvia impact structures, representing Pre-Veneneian crustal material. Two of the youngest geologic features in Av-10 are Lepida (approximately 45 km diameter) and Oppia (approximately 40 km diameter) impact craters that formed on the northern and southern wall of Feralia Planitia and each cross-cuts a trough terrain. The ejecta blanket of Oppia is mapped as 'dark mantle' material because it appears dark orange in the Framing Camera 'Clementine-type' colorratio image and has a diffuse, gradational contact distributed to the south across the rim of Rheasilvia. Mapping of surface material that appears light orange in color in the Framing Camera 'Clementine-type' color-ratio image as 'light mantle material' supports previous interpretations of an impact ejecta origin. Some light mantle deposits are easily traced to nearby source craters, but other deposits may represent distal ejecta deposits (emplaced greater than 5 crater radii away) in a microgravity environment.

Asteroids↗

DOE OSTI2022

Analysis of Interpretable Data Representations for 4D-STEM Using Unsupervised Learning

Abstract Understanding the structure of materials is crucial for engineering devices and materials with enhanced performance. Four-dimensional scanning transmission electron microscopy (4D-STEM) is capable of mapping nanometer-scale local crystallographic structure over micron-scale field of views. However, 4D-STEM datasets can contain tens of thousands of images from a wide variety of material structures, making it difficult to automate detection and classification of structures. Traditional automated analysis pipelines for 4D-STEM focus on supervised approaches, which require prior knowledge of the material structure and cannot describe anomalous or deviant structures. In this article, a pipeline for engineering 4D-STEM feature representations for unsupervised clustering using non-negative matrix factorization (NMF) is introduced. Each feature is evaluated using NMF and results are presented for both simulated and experimental data. It is shown that some data representations more reliably identify overlapping grains. Additionally, real space refinement is applied to identify spatially distinct sample regions, allowing for size and shape analysis to be performed. This work lays the foundation for improved analysis of nanoscale structural features in materials that deviate from expected crystallographic arrangement using 4D-STEM.

Bruefach, Alexandra (ORCID:0000000209323477)↗

NASA NTRS1982

The reduction, verification and interpretation of MAGSAT magnetic data over Canada

Research into an approach for altitude adjustments for MAGSAT or similar data acquired over a range of altitudes is progressing. The technique shows promise not only in the production of refined anomaly maps but also in the derivation of regional charts of the magnetic elements from satellite and ground data. Correlations between MAGSAT anomalies and other geophysical and geological data are being explored further and quantitative modelling of some features has begun. The form of some anomalies may change as the maps are refined by the technique being developed. Emphasis is being given to the Canadian regions, although analogous features elsewhere are being considered.

Coles, R. L.↗

NASA NTRS1984

Middle Atmosphere Program. Handbook for MAP. Volume 14: URSI/SCOSTEP Workshop on Technical Aspects of MST Radar

Various topics relative to middle atmosphere research were discussed. meteorological and aeronomical requirements for mesosphere-stratosphere-troposphere (MST) radar networks, general circulation of the middle atmosphere, the interpretation of radar returns from clear air, spaced antenna and Doppler techniques for velocity measurement, and techniques for the study of gravity waves and turbulence are among the topics discussed.

Bowhill, S. A.↗

NASA NTRS1993

Separation of topographic and intrinsic backscatter variations in biscopic radar images: A magic airbrush

Shaded-relief maps portraying landforms as they would appear in the absence of variations in the intrinsic brightness of the surface are a venerable and extremely useful tool in planetary geology. Such maps have traditionally been produced by a highly labor intensive manual process. Skilled cartographer-artists develop detailed mental images of landforms by meticulous scrutiny of all available data, and are able to use an airbrush and electric eraser to draw these images on a map. This process becomes increasingly time-consuming or even impossible if - as is true for radar data in general and Magellan data in particular - the effects on image brightness of varying scattering properties greatly outweigh those of slope variations. Because of the difficulty of interpreting relief in the Magellan images, the airbrush technique is being used only to remove obvious artifacts from low-resolution, shaded-relief images computed digitally from altimetric data. A surprisingly simple digital-processing technique that can be applied to pairs of radar images to produce shaded-relief-like results at the full image resolution is described. These shaded-relief images can be used not only as base maps, but to improve the accuracy of quantitative topographic mapping by radarclinometry and stereoanalysis.

Kirk, R. L.↗

NASA NTRS2005

Image of Fomalhaut Dust Ring at 350 Microns: The Relative Column Density Map Shows Pericenter-Apocenter Asymmetry

We have imaged the circumstellar disk of Fomalhaut at 350 mm wavelength, using SHARC II (Submillimeter High Angular Resolution Camera II) at the Caltech Submillimeter Observatory. The spatial resolution of the raw images (9") has been enhanced by a factor of 3 using the HiRes deconvolution procedure. We find that at this wavelength and signal-to-noise ratio (approx.12), the observed morphology is that of a simple inclined ring (i approx. 70 deg), with little or no other apparent structure--this is the first observation that shows clearly the ring morphology of the disk. We have combined our 350 mm data with Spitzer Space Telescope images at 24, 70, and 160 mm in order to estimate the two-dimensional spatial variation of relative column density ("tau map") using our DISKFIT procedure. The tau map is based on the following physical assumptions: (1) the wavelength variation of opacity is the same throughout the disk, (2) the radial variation of dust temperature is dictated by the energy balance of individual grains in the stellar radiation field, and (3) the vertical scale height of the disk follows a power-law radial variation. The results confirm the ringlike morphology but also show that the geometric center is displaced from the star by about 8 AU and that the ring has an apocentric enhancement of approximately 14% in integrated column density. If we interpret the displacement in terms of elliptical orbital motion due to gravitational perturbation by an unseen planet, then the implied forced eccentricity is ~0.06; dynamical modeling then predicts an apocentric density enhancement consistent with that inferred from the tau map.

Fomalhaut↗