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At least 955 records · Page 53

Comparative genomic and transcriptomic analyses of trans-kingdom pathogen Fusarium solani species complex reveal degrees of compartmentalization

Background: The Fusarium solani species complex (FSSC) comprises fungal pathogens responsible for mortality in a diverse range of animals and plants, but their genome diversity and transcriptome responses in animal pathogenicity remain to be elucidated. We sequenced, assembled and annotated six chromosome-level FSSC clade 3 genomes of aquatic animal and plant host origins. We established a pathosystem and investigated the expression data of F. falciforme and F. keratoplasticum in Chinese softshell turtle (Pelodiscus sinensis) host. Results: Comparative analyses between the FSSC genomes revealed a spectrum of conservation patterns in chromosomes categorised into three compartments: core, fast-core (FC), and lineage-specific (LS). LS chromosomes contribute to variations in genomes size, with up to 42.2% of variations between F. vanettenii strains. Each chromosome compartment varied in structural architectures, with FC and LS chromosomes contain higher proportions of repetitive elements with genes enriched in functions related to pathogenicity and niche expansion. We identified differences in both selection in the coding sequences and DNA methylation levels between genome features and chromosome compartments which suggest a multi-speed evolution that can be traced back to the last common ancestor of Fusarium. We further demonstrated that F. falciforme and F. keratoplasticum are opportunistic pathogens by inoculating P. sinensis eggs and identified differentially expressed genes also associated with plant pathogenicity. These included the most upregulated genes encoding the CFEM (Common in Fungal Extracellular Membrane) domain. Conclusions: The high-quality genome assemblies provided new insights into the evolution of FSSC chromosomes, which also serve as a resource for studies of fungal genome evolution and pathogenesis. This study also establishes an animal model for fungal pathogens of trans-kingdom hosts.

59 BASIC BIOLOGICAL SCIENCES↗

FY21 Progress Report: SRNL Analysis of ICCWR LCM and WAMS data for Corrosion and Cracking

The development of algorithms for machine learning and data analysis for the 3013 Surveillance Program is a collaborative effort by the Savannah River National Laboratory (SRNL) and the University of South Carolina (USC). For corrosion detection, Laser Confocal Microscope (LCM) or Wide Area 3D Measurement System (WAMS) data is extracted from large binary files, with software written to convert the data to physical attributes (e.g., height, color and grayscale values; all as functions of a location in a plane projection). A user-friendly Matlab Graphical User Interface (GUI) that reads data from either LCM or WAMS files was developed to integrate input data with software developed for processing and evaluation. The GUI can selectively download binary data, interrogate data attributes, label data, flag significant features, execute Machine Learning (ML) algorithms, output parameters for trained ML algorithms, report ML model accuracy with respect to labeled data, and generate graphical representations for various analyses. Features can be called out by user-specified thresholds, manual labeling or machine learning algorithms when they have been completed. The ability to rapidly label data is important because of the volume of data required for training machine learning algorithms. The GUI has the flexibility to allow addition of improved ML algorithms, methods for data visualization, and statistical computations. Statistical analyses via the GUI include areas of pits within a defined range of pit depths, correlations between Red-Green-Blue (RGB) or grayscale intensity and relative surface height, covariances between values associated with features, and feature histograms. The development of supervised machine learning algorithms, however, has been hindered by a lack of training data. The machine learning algorithms for crack identification are being refined but require improvements to the true positive rate for crack detection. This shortcoming is an artifact of the limited training data currently available, perhaps more so than the structure of the neural networks. At present, the best results are had from a consensus over an ensemble of randomly generated Deep Neural Network (DNN) or Convolutional Neural Network (CNN) algorithms. Although the consensus accuracy method has yielded optimum true positive and true negative rates in excess of 80%, additional validation testing is necessary. In addition to the suite of LCM data that was initially used, and which represents the majority of the work presented in this report, WAMS image data was also reviewed at a preliminary level. The review included a comparison between image resolution and dynamic range for each method. WAMS (ZON file) image data was found to have a pixel pitch of 3.69μm compared to 1 μm for the LCM (vk4 file) data, which implies a lower resolution for the WAMS images. Conversely, the ratio of dynamic range of the WAMS data to the LCM data was approximately 41:20 for height data, suggesting that information from WAMS should more accurately determine the depth of pits. At present, the significance of the greater dynamic range of the WAMS data relative to the LCM data has not yet been evaluated.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Potent Antiviral Activity against HSV-1 and SARS-CoV-2 by Antimicrobial Peptoids

Viral infections, such as those caused by Herpes Simplex Virus-1 (HSV-1) and SARS-CoV-2, affect millions of people each year. However, there are few antiviral drugs that can effectively treat these infections. The standard approach in the development of antiviral drugs involves the identification of a unique viral target, followed by the design of an agent that addresses that target. Antimicrobial peptides (AMPs) represent a novel source of potential antiviral drugs. AMPs have been shown to inactivate numerous different enveloped viruses through the disruption of their viral envelopes. However, the clinical development of AMPs as antimicrobial therapeutics has been hampered by a number of factors, especially their enzymatically labile structure as peptides. We have examined the antiviral potential of peptoid mimics of AMPs (sequence-specific N-substituted glycine oligomers). These peptoids have the distinct advantage of being insensitive to proteases, and also exhibit increased bioavailability and stability. Our results demonstrate that several peptoids exhibit potent in vitro antiviral activity against both HSV-1 and SARS-CoV-2 when incubated prior to infection. In other words, they have a direct effect on the viral structure, which appears to render the viral particles non-infective. Visualization by cryo-EM shows viral envelope disruption similar to what has been observed with AMP activity against other viruses. Furthermore, we observed no cytotoxicity against primary cultures of oral epithelial cells. These results suggest a common or biomimetic mechanism, possibly due to the differences between the phospholipid head group makeup of viral envelopes and host cell membranes, thus underscoring the potential of this class of molecules as safe and effective broad-spectrum antiviral agents. We discuss how and why differing molecular features between 10 peptoid candidates may affect both antiviral activity and selectivity.

60 APPLIED LIFE SCIENCES↗

Measuring Young Stars in Space and Time. I. The Photometric Catalog and Extinction Properties of N44

In order to better understand the role of high-mass stellar feedback in regulating star formation in giant molecular clouds, we carried out a Hubble Space Telescope (HST) Treasury Program Measuring Young Stars in Space and Time (MYSST) targeting the star-forming complex N44 in the Large Magellanic Cloud (LMC). Using the F555W and F814W broadband filters of both the ACS and WFC3/UVIS, we built a photometric catalog of 461,684 stars down to m {sub F555W} ≃ 29 mag and m {sub F814W} ≃ 28 mag, corresponding to the magnitude of an unreddened 1 Myr pre-main-sequence star of ≈ 0.09 M {sub ☉} at the LMC distance. In this first paper we describe the observing strategy of MYSST and the data reduction procedure and present the photometric catalog. We identify multiple young stellar populations tracing the gaseous rim of N44's superbubble, together with various contaminants belonging to the LMC field population. We also determine the reddening properties from the slope of the elongated red clump (RC) feature by applying the machine-learning algorithm RANSAC, and we select a set of upper-main-sequence stars as primary probes to build an extinction map, deriving a relatively modest median extinction A {sub F555W} ≃ 0.77 mag. The same procedure applied to the RC provides A {sub F555W} ≃ 0.68 mag.

47 OTHER INSTRUMENTATION↗

Anisotropies of galactic cosmic rays outside the orbit of earth measured on Pioneer 10

Preliminary results of observations of the directional distribution of cosmic rays being conducted by the University of Chicago experiment on the Pioneer 10 spacecraft are presented. The unusual geometry of the directional scan is described and some features of the response of a bidirectional coincidence telescope are discussed. Selected periods free from the presence of low-energy solar particles exhibit transient deviations from uniform directional distributions for the bidirectional flux of nuclei greater than 67 MeV/nucleon. These deviations are typically 2 to 4 (plus or minus 1) percent and are oriented very roughly in a N-S direction. Such nonuniformities observed with a bidirectional detector can only be due to even order terms in the angular distribution function.

Lentz, G. A.↗

An improved turbine disk design to increase reliability of aircraft jet engines

An analytical study was performed on a novel disk design to replace the existing high-pressure turbine, stage 1 disk on the CF6-50 turbofan engine. Preliminary studies were conducted on seven candidate disk design concepts. An integral multidisk design with bore entry of the turbine blade cooling air was selected as the improved disk design. This disk has the unique feature of being redundant such that if one portion of the disk would fail, the remaining portion would prevent the release of large disk fragments from the turbine system. Low cycle fatigue lives, initial defect propagation lives, burst speed, and the kinetic energies of probable disk fragment configurations were calculated, and comparisons were made with the existing disk, both in its current material, IN 718, and with the substitution of an advanced alloy, Rene 95. The design for redundancy approach which necessitated the addition of approximately 44.5 kg (98 lb) to the design disk substantially improved the life of the disk. The life to crack initiation was increased from 30,000 cycles to more than 100,000 cycles. The cycles to failure from initial defect propagation were increased from 380 cycles to 1564 cycles. Burst speed was increased from 126 percent overspeed to 149 percent overspeed. Additionally, the maximum fragment energies associated with a failure were decreased by an order of magnitude.

Barack, W. N.↗

Effects of scaled heatshield tile misalignment on Orbiter boundary-layer transition

The article addresses the problem of assessing the sensitivity of the heat transfer rate of a Space Orbiter windward surface and boundary-layer transition data to surface features, or 'roughness elements', characteristic of randomly misaligned heat shield tiles. Selected heat shield tiles were precision-formed on the surface of a 0.0175-scale Orbiter model. Selective electroless plating and selective electrochemical etching techniques were employed. Effects of roughness on the location of boundary-layer transition were markedly influenced by the wall-to-total temperature ratios, according to wind-tunnel test results.

Goodrich, W. D.↗

Design study of wind turbines 50 kW to 3000 kW for electric utility applications. Volume 2: Analysis and design

All possible overall system configurations, operating modes, and subsystem concepts for a wind turbine configuration for cost effective generation of electrical power were evaluated for both technical feasibility and compatibility with utility networks, as well as for economic attractiveness. A design optimization computer code was developed to determine the cost sensitivity of the various design features, and thus establish the configuration and design conditions that would minimize the generated energy costs. The preliminary designs of both a 500 kW unit and a 1500 kW unit operating in a 12 mph and 18 mph median wind speed respectively, were developed. The various design features and components evaluated are described, and the rationale employed to select the final design configuration is given. All pertinent technical performance data and component cost data is included. The costs of all major subassemblies are estimated and the resultant energy costs for both the 500 kW and 1500 kW units are calculated.

Source record↗

Commercial phosphoric acid fuel cell system technology development

Reducing cost and increasing reliability were the technology drivers in both the electric utility and on-site integrated energy system applications. The longstanding barrier to the attainment of these goals was materials. Differences in approaches and their technological features, including electrodes, matrices, intercell cooling, bipolar/separator plates, electrolyte management, fuel selection, and system design philosophy were discussed.

Prokopius, P. R.↗

QCSEE - The key to future short-haul air transport

The paper describes the design and test procedure for the QCSEE (quiet, clean, short-haul experimental engine). The engines designed for the YC-14 and YC-15 STOL aircraft, both use a very low fan pressure ratio to keep jet-flap noise about 3 dB below total system noise. Other noise reducing features discussed are the low tip speed fans and a carefully selected number of fan blades and vanes with adequate spacing between them. Attention is also given to the development of a low emissions combustor, and reduction of fan frame weight, through the use of graphite/epoxy material. The YC-15 engine also employs variable pitch fans to provide thrust reversal, thus saving weight. Finally, it is noted that the tests have proven that the engines could be configurated to meet the needs of a powered lift system without excessively compromising performance or weight.

Ciepluch, C. C.↗

Commercial phosphoric acid fuel cell system technology development

A review of the current commercial phosphoric acid fuel cell system technology development efforts is presented. In both the electric utility and on-site integrated energy system applications, reducing cost and increasing reliability are the technology drivers at this time. The longstanding barrier to the attainment of these goals, which manifests itself in a number of ways, has been materials. The differences in approach among the three major participants (United Technologies Corporation (UTC), Westinghouse Electric Corporation/Energy Research Corporation (ERC), and Engelhard Industries) and their unique technological features, including electrodes, matrices, intercell cooling, bipolar/separator plates, electrolyte management, fuel selection and system design philosophy are discussed.

Prokopius, P. R.↗

Status of commercial phosphoric acid fuel cell system development

In both the electric utility and onsite integrated energy system applications, reducing cost and increasing reliability are the main technology drivers. The longstanding barrier to the attainment of these goals, which manifests itself in a number of ways, was materials. The differences in approach among the three major participants (United Technologies Corporation, Westinghouse Electric Corporation/Energy Research Corporation, and Engelhard Industries) and their unique technological features, including electrodes, matrices, intercell cooling, bipolar/separator plates, electrolyte management, fuel selection and system design philosophy are discussed.

Warshay, M.↗

The remote-controlled spectrograph, area scanner, and spectropolarimeter for the Lick 3-m telescope

A Cassegrain spectrograph used in conjunction with an image-tube, image-dissector scanner (ITS) is discussed with reference to its design features and operation. The spectrograph has a remote control feature, and its parameters, such as slit width, decker position, filter selection, focus, and grating selection, can be easily changed by computer command or a hard-wired control box. The discussion also includes the area scanner modification which allows raster scanning and limited picture taking. Finally, the design of a two-channel polarization analyzer is presented which allows simultaneous sky and sky-plus-star observations and faint-object polarimetry.

Miller, J. S.↗

Status of commercial phosphoric acid fuel cell system development

A review of the current commercial phosphoric acid fuel cell system development efforts is presented. In both the electric utility and on-site integrated energy system applications, reducing cost and increasing reliability are important. The barrier to the attainment of these goals has been materials. The differences in approach among the three major participants are their technological features, including electrodes, matrices, intercell cooling, bipolar/separator plates, electrolyte management, fuel selection and system design philosophy.

Warshay, M.↗

Satellite observations of sea ice

Attention is given to techniques developed by NASA for the satellite acquisition of polar ice cover data, as well as for the spotlighting of selected ice cover areas in order to reveal detailed ice pack features. Of the visible, IR and microwave sensors available aboard satellites, only microwave units operate day and night and in all weather conditions to provide global synoptic coverage. Microwave may be either passive or active; the former include the Electrically Scanning Microwave Radiometer aboard Nimbus-5 and the Scanning Multichannel Microwave Radiometer of Seasat and Nimbus-7, while the latter are represented by synthetic aperture radars and radar altimeters aboard Seasat.

Thomas, R. H.↗

Advances in Planetary Geology

The surface of Mars displays a broad range of channel and valley features. There is as great a range in morphology as in scale. Some of the features of Martian geography are examined. Geomorphic mapping, crater counts on selected surfaces, and a detailed study of drainage basins are used to trace the geologic evolution of the Margaritifer Sinus Quandrangle. The layered deposits in the Valles Marineris are described in detail and the geologic processes that could have led to their formation are analyzed.

Grant, John A., III↗

S-Chart - Scheduling-Chart Program

Schedule Chart Program (S-Chart) produces quickly, through array of simple menu choices, high-quality Gantt-type scheduling and production time-line charts with minimal data-entry requirements. Significant features include: speed and ease of use with menu-driven selections from start to finish; storage and catalogs of all sets of data for rapid access and manipulation; compact program to permit storage of dozens of sets of data on program disk; and creation of ASCII text files of graphs for rapid printing. Written in ASCII code.

Klinkner, Eric R.↗

Computational Simulation of Continuous Fiber-Reinforced Ceramic Matrix Composites Behavior

This report describes a methodology which predicts the behavior of ceramic matrix composites and has been incorporated in the computational tool CEMCAN (CEramic Matrix Composite ANalyzer). The approach combines micromechanics with a unique fiber substructuring concept. In this new concept, the conventional unit cell (the smallest representative volume element of the composite) of the micromechanics approach is modified by substructuring it into several slices and developing the micromechanics-based equations at the slice level. The methodology also takes into account nonlinear ceramic matrix composite (CMC) behavior due to temperature and the fracture initiation and progression. Important features of the approach and its effectiveness are described by using selected examples. Comparisons of predictions and limited experimental data are also provided.

Murthy, Pappu L. N.↗