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All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Parallel sorting algorithm classification: is manual instrumentation necessary?

Understanding parallel algorithms is crucial for accelerating scientific simulations on complex, distributed memory, high-performance computers. Modern algorithm classification approaches learn semantics directly from source code to differentiate between algorithms, however, accessing source code is not always possible. We can learn about parallel algorithms from observing their performance, as programs running the same algorithms and using the same hardware should exhibit similar performance characteristics. We present an approach to learn algorithm classes from parallel performance data directly in order to classify algorithms without access to the source code. We extend previous work to enable classifying parallel sorting algorithms using automatic instrumentation instead of requiring manual region annotations in the source code. In this work, we design and demonstrate a study for classification of parallel sorting algorithms using parallel performance data collected from automatic instrumentation, and evaluate the performance of our new methodology on classification. We leverage Caliper to collect the performance data, Thicket for our exploratory data analysis (EDA), and PyTorch and Scikit-learn to evaluate the effectiveness of random forests, support vector machines (SVMs), decision trees, neural networks, and logistic regressions on parallel performance data. Additionally, we study noise in parallel performance data, whether the removal of noise and pre-processing of the data is necessary to accurately classify parallel sorting algorithms, and determine the effectiveness of features created from performance data. In conclusion, we demonstrate classification accuracy for these five different models of up to 97.7% across four different parallel algorithm classes.

Algorithm Classification↗
DOE OSTI2025

ARCH: Large-scale knowledge graph via aggregated narrative codified health records analysis

Objective: Electronic health record (EHR) systems contain a wealth of clinical data stored as both codified data and free-text narrative notes (NLP). The complexity of EHR presents challenges in feature representation, information extraction, and uncertainty quantification. Here, to address these challenges, we proposed an efficient Aggregated naRrative Codified Health (ARCH) records analysis to generate a large-scale knowledge graph (KG) for a comprehensive set of EHR codified and narrative features. Methods: Using data from 12.5 million Veterans Affairs patients, ARCH first derives embedding vectors and generates similarities along with associated p-values to measure the strength of relatedness between clinical features with statistical certainty quantification. Next, ARCH performs a sparse embedding regression to remove indirect linkage between features to build a sparse KG. Finally, ARCH was validated on various clinical tasks, including detecting known relationships between entity pairs, predicting drug side effects, disease phenotyping, as well as sub-typing Alzheimer’s disease patients. Results: ARCH produces high-quality clinical embeddings and KG for over 60,000 codified and narrative EHR concepts. The KG and embeddings are visualized in the R-shiny powered web-API.3 ARCH achieved high accuracy in detecting EHR concept relationships, with AUCs of 0.926 (codified) and 0.861 (NLP) for similar EHR concepts, and 0.810 (codified) and 0.843 (NLP) for related pairs. It detected drug side effects with a 0.723 AUC, which improved to 0.826 after fine-tuning. Using both codified and NLP features, the detection power increased significantly. Compared to other methods, ARCH has superior accuracy and enhances weakly supervised phenotyping algorithms’ performance. Notably, it successfully categorized Alzheimer’s patients into two subgroups with varying mortality rates. Conclusion: The proposed ARCH algorithm generates large-scale high-quality semantic representations and knowledge graph for both codified and NLP EHR features, useful for a wide range of predictive modeling tasks.

Electronic health records↗
DOE OSTI2023

Investigating Inherent Numerical Stabilization for the Moist, Compressible, Non‐Hydrostatic Euler Equations on Collocated Grids

This study investigates inherent numerical dissipation due to upwind fluxes and reconstruction strategies for collocated Finite-Volume integration of the Euler equations. Idealized supercell simulations are used without any explicit dissipation. Flux terms are split into: mass flux, pressure, and advected quantities. They are computed with the following upwind strategies: central, advectively upwind, and acoustically upwind. This is performed for third and ninth-order-accurate reconstructions with and without Weighted Essentially Non-Oscillatory limiting. Acoustic-only upwinding for pressure and mass flux terms and advective-only upwinding for advected quantities is the most flexible simplification found. It reduces data movement and computations. Assuming a constant speed of sound in acoustic upwinding gives similar results to using the true speed of sound. Dissipation from upwind adapts automatically to grid spacing, time step, reconstruction accuracy, and flow smoothness. While stability is maintained even at 21st-order spatial accuracy, there is a limit to the spatial order of accuracy for which upwinding alone can create a realizable solution in the conditions of this study. Convex combinations of upwind and central solutions for flux terms also reduced dissipation, but as the central proportion grows, solutions become physically unrealizable. The range of length scales of the kinetic energy spectra can be extended along k −5/3 to smaller spatial scales by reducing dissipation either with higher-order reconstructions or using convex combinations of upwind and central fluxes. However, not all extensions of the length scale range along k −5/3 exhibit physically realizable solutions, even though the spectra appear to be physical.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Substantial influence of vapour buoyancy on tropospheric air temperature and subtropical cloud

The molar mass of water vapor is less than that of dry air, making humid air lighter than dry air at the same temperature and pressure. This effect is known as vapor buoyancy and has been considered negligibly small in large-scale climate dynamics. Here we use theory, reanalysis data, and a hierarchy of climate models to show that vapor buoyancy has a similar magnitude to thermal buoyancy in the tropical free troposphere. We further show that vapor buoyancy makes cold air rise and increases subtropical stratiform low clouds by up to 70% of its climatological value. However, some widely used climate models fail to represent vapor buoyancy in the governing equations. Further, this flaw leads to inaccurate simulations of cloud distributions—the largest uncertainty in predicting climate change.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Time-resolved 3D imaging of two-phase fluid flow inside a steel fuel injector using synchrotron X-ray tomography

The multiphase flow inside a diesel injection nozzle is imaged using synchrotron X-rays from the Advanced Photon Source at Argonne National Laboratory. Through acquisitions performed at several viewing angles and subsequent tomographic reconstruction, in-situ 3D visualization is achieved for the first time inside a steel injector at engine-like operating conditions. The morphology of the internal flow reveals strong flow separation and vapor-filled cavities (cavitation), the degree of which correlates with the nozzle's asymmetric inlet corner profile. Micron-scale surface features, which are artifacts of manufacturing, are shown to influence the morphology of the resulting liquid-gas interface. The data obtained at 0.1 ms time resolution exposes transient flow features and the flow development timescales are shown to be correlated with in-situ imaging of the fuel injector's hydraulically-actuated valve (needle). As more than 98.5% of the X-ray photon flux is attenuated within the steel injector body itself, we are posed with a unique challenge for imaging the flow within. Time-resolved imaging under these low-light conditions is achieved by exploiting both the refractive and absorptive properties of X-ray photons. The data-processing strategy converted these images with a signal-to-noise ratio of similar to 10 into a meaningful dataset for understanding internal flow and cavitation in a nozzle of diameter 200 mu m enclosed within 1-2 millimeters of steel.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2020

Metabolic Profiling of Volatile Organic Compounds (VOCs) Emitted by the Pathogens Francisella tularensis and Bacillus anthracis in Liquid Culture

We conducted comprehensive (untargeted) metabolic profiling of volatile organic compounds (VOCs) emitted in culture by bacterial taxa Francisella tularensis (F. tularensis) subspecies novicida and Bacillus anthracis (B. anthracis) Sterne, surrogates for potential bacterial bioterrorism agents, as well as selective measurements of VOCs from their fully virulent counterparts, F. tularensis subspecies tularensis strain SCHU S4 and B. anthracis Ames. F. tularensis and B. anthracis were grown in liquid broth for time periods that covered logarithmic growth, stationary, and decline phases. VOCs emitted over the course of the growth phases were collected from the headspace above the cultures using solid phase microextraction (SPME) and were analyzed using gas chromatography-mass spectrometry (GC-MS). We developed criteria for distinguishing VOCs originating from bacteria versus background VOCs (originating from growth media only controls or sampling devices). Analyses of collected VOCs revealed methyl ketones, alcohols, esters, carboxylic acids, and nitrogen- and sulfur-containing compounds that were present in the bacterial cultures and absent (or present at only low abundance) in control samples indicating that these compounds originated from the bacteria. Distinct VOC profiles where observed for F. tularensis when compared with B. anthracis while the observed profiles of each of the two F. tularensis and B. anthracis strains exhibited some similarities. Furthermore, the relative abundance of VOCs was influenced by bacterial growth phase. These data illustrate the potential for VOC profiles to distinguish pathogens at the genus and species-level and to discriminate bacterial growth phases. The determination of VOC profiles lays the groundwork for non-invasive probes of bacterial metabolism and offers prospects for detection of microbe-specific VOC biomarkers from two potential biowarfare agents.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Spectroscopic characterization of neptunium(VI), plutonium(VI), americium(VI) and neptunium(V) encapsulated in uranyl nitrate hexahydrate

The coordination of crystalline products resulting from the co-crystallization of Np(VI), Pu(VI), Am(VI), and Np(V) with uranyl nitrate hexahydrate (UNH) has been revealed through solid-state spectroscopic characterization via diffuse reflectance UV-Vis-NIR spectroscopy, SEM-EDS, and extended X-ray absorption fine structure (EXAFS) spectroscopy. Density functional and multireference wavefunction calculations were performed to analyze the An(VI/V)O 2 (NO 3 ) 2 ·2H 2 O electronic structures and to help assign the observed transitions in the absorption spectra. EXAFS show a similar coordination between the U(VI) in UNH and Np(VI) and Pu(VI); while Am resulted in a similar coordination to Am(III), as reduction of Am(VI) occurred prior to EXAFS data being obtained. Finally, the co-crystallization of the oxidized transuranic species—penta- and hexavalent—with UNH, represents a significant advance from not only a practical standpoint in providing an elegant solution for used nuclear fuel recycle, but also as an avenue to expand the fundamental understanding of the 5f electronic behavior in the solid-state.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

Spectroscopic characterization of neptunium(VI), plutonium(VI), americium(VI) and neptunium(V) encapsulated in uranyl nitrate hexahydrate

The coordination of crystalline products resulting from the co-crystallization of Np(VI), Pu(VI), Am(VI), and Np(V) with uranyl nitrate hexahydrate (UNH) has been revealed through solid-state spectroscopic characterization via diffuse reflectance UV-Vis-NIR, SEM-EDS, and extended X-ray absorption fine structure (EXAFS). Density functional and multireference wavefunction calculations were performed to analyze the An(VI/V)O 2 (NO 3 ) 2 ·2H 2 O electronic structures and to help assign the observed transitions in the absorption spectra. EXAFS show a similar coordination between the U(VI) in UNH and Np(VI) and Pu(VI); while Am resulted in a similar coordination to Am(III), as reduction of Am(VI) occurred prior to EXAFS data being obtained. Here, the co-crystallization of the oxidized transuranic species—penta- and hexavalent—with UNH, represents a significant advance from not only a practical standpoint in providing an elegant solution for used nuclear fuel recycle, but also as an avenue to expand the fundamental understanding of the 5f electronic behavior in the solid-state.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

Characterization and dynamics of the peculiar stream Jhelum: A tentative role for the Sagittarius dwarf galaxy

Stellar streams are a promising tool to study the Milky Way’s dark matter subhalo population, as interactions with subhalos are expected to leave visible imprints in the streams in the form of substructure. However, there may be other causes of substructure. Here we studied the kinematics and the unusual morphology of the stellar stream Jhelum. Using a combination of ground-based photometry and Gaia EDR3 astrometry, we characterized the morphology of Jhelum. We combined this new data with radial velocities from the literature to perform orbit integrations of the stream in static Galactic potentials. We also carried out N-body simulations in the presence of the Sagittarius dwarf galaxy. The new data reveal a previously unreported tertiary component in the stream, as well as several gaps and a kink-like feature in its narrow component. We find that for a range of realistic Galactic potentials, no single orbit is able to reproduce Jhelum’s radial velocity data entirely. A generic property of the orbital solutions is that they share a similar orbital plane to Sagittarius and this leads to repeated encounters with the stream. Using N-body simulations that include a massive Sagittarius, we explored its effect on Jhelum, and we show that these encounters are able to qualitatively reproduce the narrow and broad components in Jhelum, as well as create a tertiary component in some cases. We also find evidence that such encounters can result in an apparent increase in the velocity dispersion of the stream by a factor up to four due to overlapping narrow and broad components. Our findings suggest that the Jhelum stream is even more complex than once thought; however, its morphology and kinematics can tentatively be explained via the interactions with Sagittarius. In this scenario, the formation of Jhelum’s narrow and broad components occurs naturally, yet some of the smaller gap-like features remain to be explained.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

ServiceX A Distributed, Caching, Columnar Data Delivery Service

We will describe a component of the Intelligent Data Delivery Service being developed in collaboration with IRIS-HEP and the LHC experiments. ServiceX is an experiment-agnostic service to enable on-demand data delivery specifically tailored for nearly-interactive vectorized analysis. This work is motivated by the data engineering challenges posed by HL-LHC data volumes and the increasing popularity of python and Spark-based analysis workflows.ServiceX gives analyzers the ability to query events by dataset metadata. It uses containerized transformations to extract just the data required for the analysis. This operation is colocated with the data to avoid transferring unnecessary branches over the WAN. Simple filtering operations are supported to further reduce the amount of data transferred.Transformed events are cached in a columnar datastore to accelerate delivery of subsequent similar requests. ServiceX will learn commonly related columns and automatically include them in the transformation to increase the potential for cache hits by other users.Selected events are streamed to the analysis system using an efficient wire protocol that can be readily consumed by a variety of computational frameworks. This reduces time-to-insight for physics analysis by delegating to ServiceX the complexity of event selection, slimming, reformatting, and streaming.

Galewsky, B.↗
DOE OSTI2022

Installation of a solid state neutral particle analyzer array on mega ampere spherical tokamak upgrade

A compact solid state neutral particle analyzer (SSNPA) diagnostic, previously installed at NSTX-U, has been moved to MAST-U and successfully operated in the first physics campaign (MU01). The SSNPA operates by detecting the flux of fast neutral particles produced by charge exchange (CX) reactions to diagnose the fast ion distribution. The diagnostic consists of three 16-channel sensors, which provide a radial view of the plasma and have a sightline intersection with the South–South neutral beam line. From this radial geometry, active CX signals from mostly trapped particles are observed. Each channel has a spatial resolution of 3–4 cm, a temporal resolution of 200 kHz, and an average pitch angle resolution of a few degrees. The three-sensor configuration allows for coarse energy resolution of the CX signals; each sensor sees similar sightlines but different filter thicknesses alter the energy cutoffs by known amounts. Experimental data show that all channels are collecting data as intended. The signal to noise ratio is typically around 15. Preliminary data analysis shows a correlation between the SSNPA signal and magnetohydrodynamic activity in the plasma as expected.

Instruments & Instrumentation↗
DOE OSTI2025

Dark matter in X-rays: revised XMM-Newton limits and new constraints from eROSITA

We investigate two classes of dark matter (DM) candidates, sub-GeV particles and primordial black holes (PBHs), that can inject low-energy electrons and positrons into the Milky Way and leave observable signatures in the X-ray sky. In the case of sub-GeV DM, annihilation or decay into e + e - contributes to the diffuse sea of cosmic-ray (CR) leptons, which can generate bremsstrahlung and inverse Compton (IC) emission on Galactic photon fields, producing a broad spectrum from X-rays to γ-rays detectable by instruments such as eROSITA and XMM-Newton. For PBHs with masses below ∼10 17 g, Hawking evaporation similarly yields low-energy e ± , leading to comparable diffuse emission. Using the first data release from eROSITA and incorporating up-to-date CR propagation and diffusion parameters, we derive new constraints on both scenarios. For sub-GeV DM, we exclude thermally averaged annihilation cross sections in the range ∼ 10 -27 –10 -25 cm 3 /s and decay lifetimes of ∼ 10 24 –10 25 s for masses between 1 MeV and 1 GeV, with eROSITA outperforming previous X-ray constraints below ∼ 30 MeV. For asteroid-mass PBHs, we set new bounds on the DM fraction based on their Hawking-induced emission. Finally, we revisit previous constraints in 10.1088/1475-7516/2023/07/026JCAP 07 (2023) 026 and consequently 10.3847/1538-4357/ad41e0Astrophys. J. 968 (2024) 46 derived from XMM-Newton, finding that they were approximately four orders of magnitude too stringent due to the use of the instrument's geometric solid angle rather than its exposure-weighted solid angle. Upon using the exposure-weighted solid angle, we show that the revised XMM-Newton limits are slightly weaker than those from eROSITA.

X-rays↗
DOE OSTI2023

Heterothermic Migration Strategies in Flying Vertebrates

Migration is a widespread and highly variable trait among animals. Population-level patterns arise from individual-level decisions, including physiological and energetic constraints. Many aspects of migration are influenced by behaviors and strategies employed during periods of stopover, where migrants may encounter variable or unpredictable conditions. Thermoregulation can be a major cost for homeotherms which largely encounter ambient temperatures below the lower critical temperature during migration, especially during the rest phase of the daily cycle. In this review we describe the empirical evidence, theoretical models, and potential implications of bats and birds that use heterothermy to reduce thermoregulatory costs during migration. Torpor-assisted migration is a strategy described for migrating temperate insectivorous bats, whereby torpor can be used during periods of inactivity to drastically reduce thermoregulatory costs and increase net refueling rate, leading to shorter stopover duration, reduced fuel load requirement, and potential consequences for broad-scale movement patterns and survival. Hummingbirds can adopt a similar strategy, but most birds are not capable of torpor. However, there is an increasing recognition of the use of more shallow heterothermic strategies by diverse bird species during migration, with similarly important implications for migration energetics. A growing body of published literature and preliminary data from ongoing research indicate that heterothermic migration strategies in birds may be more common than traditionally appreciated. We further take a broad evolutionary perspective to consider heterothermy as an alternative to migration in some species, or as a conceptual link to consider alternatives to seasonal resource limitations. There is a growing body of evidence related to heterothermic migration strategies in bats and birds, but many important questions related to the broader implications of this strategy remain.

bats↗
DOE OSTI2026

High-spin states in 60 Cu and implications for states in the mirror nucleus 60 Ga

High-spin states in 60 Cu are investigated on the basis of reaction-channel-selected 𝛾-ray spectroscopy. Data stem from three experiments that used the same fusion-evaporation reaction at similar beam energies. The Gammasphere 𝛾-ray spectrometer was combined with the Microball CsI(Tl) detector array and sets of liquid-scintillator neutron detectors which allowed us to identify and tag on evaporated light charged particles and neutrons, respectively. A level scheme is proposed which comprises more than 300 𝛾-ray transitions connecting more than 100 excited states. Predictions from cranked Nilsson-Strutinsky calculations describe the observed high-spin collective structures in 60 Cu. Predictions of shell-model calculations are probed with a suite of low- to medium-spin states of both parities. Taking into account isospin-symmetry-breaking terms in these calculations, a case study of the yrast line of the weakly bound mirror nucleus 60 Ga is presented.

Rudolph, Dirk [Lund University (Sweden)] (ORCID:00↗
DOE OSTI2021

Global Microscopic Description of Nucleon-Nucleus Scattering with Quantified Uncertainties

We develop for the first time a microscopic global nucleon-nucleus optical potential with quantified uncertainties suitable for analyzing nuclear reaction experiments at next-generation rare-isotope beam facilities. Within the improved local density approximation and without any adjustable parameters, we begin by computing proton-nucleus and neutron-nucleus optical potentials from a set of five nuclear forces from chiral effective field theory for 1800 target nuclei in the mass range 12 ≤ A ≤ 242 for energies between 0 MeV < E ≲ 150 MeV. We then parameterize a global optical potential for each chiral force that depends smoothly on the projectile energy as well as the target nucleus mass number and isospin asymmetry. Uncertainty bands for elastic scattering observables are generated from a full covariance analysis of the parameters entering in the description of our global optical potential and benchmarked against existing experimental data for stable target nuclei. Since our approach is purely microscopic, we anticipate a similar quality of the model for nucleon scattering on unstable isotopes.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

Field‐scale analysis of miscanthus production indicates climate change may increase the opportunity for water quality improvement in a key Iowa watershed

Abstract The Raccoon River Basin is the primary source for drinking water in Iowa's largest city and plays a major role in the Mississippi River Basin's high nutrient exports. Future climate change may have major impacts on the biological, physiological, and agronomic processes imposing a threat to ecosystem services. Efforts to reduce nitrogen (N) loads within this basin have included local litigation and the implementation of the Iowa Nutrient Reduction Strategy, which suggest incorporating bioenergy crops (i.e., miscanthus) within the current corn–soybean landscape to reach a 41% reduction in nitrate loads. This study focuses on simulating N export for historical and future land use scenarios by using an agroecosystem model (Agro‐IBIS) and a hydrology model (THMB) at the 500‐m resolution, similar to the scale of agricultural fields. Model simulations are driven by CMIP5 climate data for historical, mid‐century, and late‐century under the RCP 4.5 and 8.5 warming projections. Using recent crop profit analyses for the state of Iowa, profitability maps were generated and nitrogen leaching thresholds were used to determine where miscanthus should replace corn–soybean area to maximize reductions in N pollution. Our results show that miscanthus inclusion on low profit and high N leaching areas can result in a 4% reduction of N loss under current climate conditions and may reduce N loss by 21%–26% under future climate conditions, implying that water quality has the potential continue to improve under future climate conditions when strategically implemented conservation practices are included in future farm management plans.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

powersqueeze

powersqueeze (psqz) is a truncated power iteration library intended for high-performance computing platforms. psqz efficiently produces low-dimensional, linear measurements of graph matrix spectra by combining classical power iteration with sparse Johnson-Lindenstrauss transforms. psqz is intended to produce high-quality, fast, data-oblivious low-dimensional representations of high-dimensional sparse data such as graphs and term-document matrices. psqz is intended to replace similar workflows that depend on directly approximating a truncated eigendecomposition (e.g., the first step of spectral clustering), which is a much more expensive operation.

Priest, BenjaminW [Lawrence Livermore National Lab↗
DOE OSTI2020

Probabilistic modeling approach for tracking each collision and breakup of computational parcels

A modeling approach for binary collision and particle breakup is presented for a stochastic particle model in which a computational parcel represents a number of similar physical particles. Presented in this report includes sampling from a distribution of discrete data, parcel number reduction, probabilistic calculation of collision rates, and various particle-particle interactions. Modeling of elastic scattering, coalescence and agglomeration, and breakup are discussed for solid-solid, solid-liquid, and liquid-liquid particle collisions. Numerical procedures are also summarized.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗