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At least 955 records · Page 53
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Carbon dioxide (CO2) flux, amplicon sequencing and liquid chromatography–mass spectrometry (LC-MS) data for pyrogenic organic matter (PYOM) amended soil incubations in lab, Madison, WI, 2021-22

This dataset comprises soil-pyrogenic organic matter (PyOM) incubation experiments conducted in a laboratory setting. The focus was on measuring carbon dioxide (CO2) flux emitted in the headspace of incubation jars over a one-month period. The aim was to estimate carbon mineralization from two different carbon fractions in PyOM, as well as carbon mineralization from soil organic carbon (SOC). Bacterial and fungal community profiles were tracked at various time points during the incubation to observe changes in the overall community and specific responders to PyOM. LC-MS analysis of soil samples was also performed to monitor changes in the soil's chemical composition.The provided dataset includes processed CO2 flux measurements obtained from the Picarro-multiplexer measurement setup for each sample incubation jar. This data is available in the "CO2Flux.csv" file. Additionally, the dataset includes CO2 flux data partitioned to estimate mean carbon mineralization from the two PyOM carbon fractions, bulk PyOM, and SOC. The cumulative carbon mineralization data is provided in "cml_respired.csv," while the rate of carbon mineralization data is in "rate_respired.csv." The file "cml_respired_lastcyc.csv" contains cumulative carbon mineralization data for the PyOM carbon fractions, bulk PyOM, and SOC throughout the entire incubation period.For the LC-MS analysis, the raw data can be found in the "20220721_NZ_PeakHeights_FinalAnalysis.csv" file, while sample metadata is provided in "20220721_NZpilot_Metadata.csv". Processed LC-MS data is available in the file "20220721_NZ_FINAL_msdat_sub3.csv". Lastly, the dataset includes the relative abundance data for bacterial genera that exhibited a significant positive response to the addition of PyOM produced at 350 degrees Celsius, which can be found in "resp_genera_350.csv".

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Duke Forest FACE (FACTS-I): Plant and Soil Response Data

This dataset describing the responses of plant and soil pools and fluxes to elevated atmospheric CO2 concentration and increased nitrogen supply was collected from Duke Forest Free Air CO2 Enrichment (FACE) – Forest-Atmosphere Carbon Transfer and Storage (FACTS-I) experiment from 1996 to 2012. The dataset includes data files for allometry (diameter at breast height, tree height, and height to live crown base), leaf area index, biomass (stem, branch, foliage, and root biomass, tree density, and basal area), net primary productivity (stem, branch, foliage, reproductive, and coarse root NPP), sap flux density, soil CO2 efflux, and stem temperature. Data files were formatted as .csv (Microsoft Excel or other spreadsheet programs can be used to read the format) and file descriptions, including variable name, unit, and data range, can be found in ‘FileDescription_[data_name].txt’ files. The Duke FACE experiment was in a loblolly pine (Pinus taeda L.) plantation established in 1983. Naturally regenerated broadleaved species including sweetgum (Liquidambar styraciflua L.) and tulip poplar (Liriodendron tulipifera L.), mostly in the overstory, and winged elm (Ulmus alata Michx.) and red maple (Acer rubrum L.) were common in the understory. The FACE experiment commenced with two plots (plots 7-8) in 1994 (Oren et al. 2001), with six additional plots (plots 1-6) coming online on 27 August 1996. CO2 enrichment was terminated on 31 October 2010 and post-enrichment data collection continued through 2012. Complete fertilization was applied annually to half of plots 7-8 from 1998 to 2004. The nutrient addition experiment expanded to half of plots 1-6 with a common protocol of N-fertilization in 2005 and continued until 2012. The levels of treatment in this dataset were expressed as ambient CO2 (AMB) or elevated CO2 (ELE) for CO2 treatment and control soil (CONT) or fertilized soil (FERT) for N treatment, respectively.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Soil Moisture Data for TRACER project (Houston, TX)

Three soil moisture and metrological data collection sites are located in the Houston, TX, area and collect data every 5 minutes. The data includes soil moisture, volumetric wate content, electrical conductivity of soil, soil temperature, rain precipitation, air temperature and other parameters. For real-time streaming of the data please visit the website: https://coastal.beg.utexas.edu/soilmoisture/#!/

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

TRACER Soil Moisture Data, Guy TX

The purpose of this study was to collect and distribute ground-truth soil water content and meteorological data in the Houston, TX, area, supporting the Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) user facility, and the 2022 field campaign for the Tracking Aerosol Convection Interactions ExpeRiment (TRACER). The files herein contain soil water content and meteorological data for the Guy, Texas station that the Bureau of Economic Geology at UT Austin installed in the area of study during period of performance. This station produces two data files. First, the file ending with “_Soil_flagged.dat” contains mean hourly volumetric soil water content and temperature measured at 5, 10, 20 and 50 cm depths. The file ending with “_Meteoro_flagged.dat” contains mean hourly measured precipitation, air temperature and humidity, wind speed and direction, and solar radiation. All data have undergone QA/QC procedures that are described by Caldwell et al. (2019) and Dorigo et al. (2013) for the soil-specific data, and EPA (2008) for the meteorological data.

precipitation↗
DOE OSTI2020

Soil Environmental Conditions in the East River Watershed, CO

This dataset contains depth-resolved soil environmental variables collected between June 2016 and October 2018 from the Bradley Meadow site in the East River watershed. Datalogger output from 7 Campbell CS655 12 cm Soil Moisture and Temperature Sensors including depth, temperature, volumetric water content, and electrical conductivity are included in ‘BM_Merged_T_VWC_0616_10_18.csv’. Sensors were installed in June 2016. Data have been processed to merge raw sensor data and to remove additional variables. No additional QA/QC was performed. Measured pCO2 and depth are contained in ‘BM_EGM_WELL_CO2.csv’. These data represent gas well samples measured via injection using a PP Systems EGM-5 infra-red gas analyzer as described in the methods section. Measured CO2 surface flux values are contained in 'BM_EGM_Surface_Flux.csv'. These were measured using the PP Systems EGM-5 with the Soil Respiration Chamber attachment. Multiple reps are reported for each measurement including CO2 flux rate calculations using built-in linear and quadratic function methods, and average and standard deviations are taken across all reps and calculation methods.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Controls From Above and Below: Snow, Soil, and Steepness Drive Diverging Trends of Subsurface Water and Streamflow Dynamics

ABSTRACT The importance of subsurface water dynamics, such as water storage and flow partitioning, is well recognised. Yet, our understanding of their drivers and links to streamflow generation has remained elusive, especially in small headwater streams that are often data‐limited but crucial for downstream water quantity and quality. Large‐scale analyses have focused on streamflow characteristics across rivers with varying drainage areas, often overlooking the subsurface water dynamics that shape streamflow behaviour. Here we ask the question: What are the climate and landscape characteristics that regulate subsurface dynamic storage, flow path partitioning, and dynamics of streamflow generation in headwater streams? To answer this question, we used streamflow data and a widely‐used hydrological model (HBV) for 15 headwater catchments across the contiguous United States. Results show that climate characteristics such as aridity and precipitation phase (snow or rain) and land attributes such as topography and soil texture are key drivers of streamflow generation dynamics. In particular, steeper slopes generally promoted more streamflow, regardless of aridity. Streams in flat, rainy sites (< 30% precipitation as snow) with finer soils exhibited flashier regimes than those in snowy sites (> 30% precipitation as snow) or sites with coarse soils and deeper flow paths. In snowy sites, less weathered, thinner soils promoted shallower flow paths such that discharge was more sensitive to changes in storage, but snow dampened streamflow flashiness overall. Results here indicate that land characteristics such as steepness and soil texture modify subsurface water storage and shallow and deep flow partitioning, ultimately regulating streamflow response to climate forcing. As climate change increases uncertainty in water availability, understanding the interacting climate and landscape features that regulate streamflow will be essential to predict hydrological shifts in headwater catchments and improve water resources management.

Kerins, Devon [Department of Civil and Environment↗
DOE OSTI2025

Temporal Patterns in Soil Redox Potential Vary Across a Freshwater Coastal Delta

Widespread and persistent flooding is submerging coastal ecosystems, particularly along the Louisiana Gulf coast, where flooding results from the compounding effects of ground subsidence and rising sea level. Restoration projects aim to mitigate land loss by diverting sediment loads from rivers into degraded areas to increase ground elevation. To predict how coastal ecosystems will change over time in response to projected changes in relative sea level and restoration, it is necessary to understand how subsurface biogeochemical processes respond to dynamic hydrologic forcings. Here, this study evaluates how environmental parameters that integrate biogeochemical processes vary with water table fluctuations in the freshwater Wax Lake Delta (WLD) in Louisiana, USA, where water diversions have formed one of the only active deltas along the coast. High‐frequency observations of water level, soil redox potential, specific conductance and pH were made for 1 year along elevation transects located on the older, proximal and younger, distal ends of a deltaic island. Redox responded rapidly to changing water tables, with fluctuations occurring primarily in shallow soils (< 20 cm) and at higher elevations. Deeper soils and those at lower elevation remained inundated and reduced. Semi‐diurnal tidal fluctuations were pronounced in younger, distal soils, presumably due to rapid groundwater exchange with the river channel. Tidal signals were muted in older soils that instead exhibited seasonal variability associated with river discharge and evapotranspiration. Although much of the delta sediments are persistently reducing and anoxic, redox fluctuations in the natural levees that border the deltaic islands likely drive high rates of biogeochemical activity. Evaluating how hydrology drives the frequency and duration of redox fluctuations provides a basis for understanding how biogeochemical processes might vary with complex hydrological interactions in coastal systems.

Herndon, Elizabeth [Oak Ridge National Laboratory ↗
DOE OSTI2020

Fine-root dynamics vary with soil depth and precipitation in a lown-utrient tropical forest in the Central Amazonia

A common assumption in tropical ecology is that root systems respond rapidly to climatic cues but that most of that response is limited to the uppermost layer of the soil, with relatively limited changes in deeper layers. However, this assumption has not been tested directly, preventing models from accurately predicting the response of tropical forests to environmental change. We measured seasonal dynamics of fine roots in a Central Amazonia mature forest using minirhizotrons to 90 cm depth, which were calibrated with fine roots extracted from soil cores. Root productivity and mortality in superficial soil layers were positively correlated with precipitation, whereas root standing length was greater during the dry periods at the deeper layers. Contrary to historical assumptions, a large fraction of fine-root standing biomass (46%) and productivity (41%) were found in soil layers deeper than 30 cm. Furthermore, root turnover decreased linearly with soil depth. Our findings demonstrate a strong relationship between fine-root dynamics and precipitation regimes in Central Amazonia. Our results also emphasize the importance of deep roots for accurate estimates of primary productivity and the interaction between roots and carbon, water, and nutrients.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Intensive agricultural management‐induced subsurface accumulation of labile phosphorus in Midwestern agricultural soils dominated by tile lines

Abstract In addition to surface runoff, subsurface P loss through tile lines in agricultural lands has received attention over the last decade. It is not clearly understood how this strong ligand, phosphate, is distributed in subsoils (≤180 cm), contributing to subsurface P loss. We hypothesized that subsurface accumulation of labile P as a result of long‐term intensive agricultural management contributes to subsurface P loss. The depth sequence distribution of P and its speciation and reactivity were investigated in tile‐line‐dominated Midwestern agricultural fields via chemical extraction and digestion, batch desorption experiments, and X‐ray absorption near‐edge structure spectroscopy. The results suggest that labile P in subsoils exceeds the eutrophication‐inducing level (>0.01 mg L –1 ). Because of intensive agricultural management, total P was ∼400 mg kg –1 in surface soils and ∼200‐300 mg kg –1 in subsoils. The depth sequence distribution of P indicated the translocation of P to subsoils. Although phosphate and phytic acid adsorbed by Al or Fe (oxyhydro)oxides and calcite were found in surface soils, phosphate adsorbed to calcite, hydroxyapatite, or both were the dominant P species in subsoils. Phosphate was highest in surface soils and decreased sharply with increasing depth. Slightly alkaline soil in subsoils suppressed the release of P but the process was continuous after 30 d. Subsurface P loss was influenced by the dissolution and desorption process of inorganic P phases and preferentially transported P from surface soils. Subsurface P loss should be considered in strategies to reduce agricultural P loss in the Gulf of Mexico.

Xu, Suwei↗
DOE OSTI2021

Developing a strategy for the national coordinated soil moisture monitoring network

Soil moisture is a critical land surface variable, affecting a wide variety of climatological, agricultural, and hydrological processes. Determining the current soil moisture status is possible via a variety of methods, including in situ monitoring, remote sensing, and numerical modeling. Although all of these approaches are rapidly evolving, there is no cohesive strategy or framework to integrate these diverse information sources to develop and disseminate coordinated national soil moisture products that will improve our ability to understand climate variability. The National Coordinated Soil Moisture Monitoring Network initiative has developed a national strategy for network coordination with NOAA's National Integrated Drought Information System. The strategy is currently in review within NOAA, and work is underway to implement the initial milestones of the strategy. This update reviews the goals and steps being taken to establish this national-scale coordination for soil moisture monitoring in the United States.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Soil Particulate Organic Matter is Related to Ericoid Mycorrhizal Shrubs, not Ectomycorrhizal Trees, in a Temperate Forest

Mycorrhizal associations are key drivers of soil biogeochemistry, but previous studies have focused almost exclusively on ectomycorrhizal (EcM) and arbuscular mycorrhizal (AM) associations. Ericoid mycorrhizal (ErM) shrubs frequently occur in forest understories and are expanding in response to disturbance, but are rarely considered in biogeochemical frameworks. We investigated the relationships of understory ErM shrubs and overstory trees on carbon (C) and nitrogen (N) in soil organic matter fractions in a southern Appalachian temperate forest. We sampled the 0–10 cm mineral soil layer from 43 plots at the Coweeta Hydrologic Laboratory, across gradients in overstory EcM dominance and understory ErM shrub biomass. Soil C:N ratios increased with both increasing EcM dominance and increasing ErM shrub biomass. However, total particulate organic matter (POM) C, and the proportion of C and N held in POM increased with increasing ErM shrub biomass, but not with increasing EcM dominance. In contrast, mineral-associated organic matter (MAOM) C and N were negatively associated with EcM dominance, but were not related to ErM shrubs. Our findings suggest that ErM shrubs facilitate POM formation while AM trees promote MAOM formation. Because ErM shrub biomass represents a small fraction of total forest biomass, our work provides evidence that ErM shrubs have an outsized effect on soil organic matter, which advocates for their inclusion in mechanistic studies and biogeochemical frameworks.

Bonilla, Kayla A. [University of Georgia, Athens, ↗
DOE OSTI2020

Assessing microbial residues in soil as a potential carbon sink and moderator of carbon use efficiency

Abstract A longstanding assumption of glucose tracing experiments is that all glucose is microbially utilized during short incubations of ≤2 days to become microbial biomass or carbon dioxide. Carbon use efficiency (CUE) estimates have consequently ignored the formation of residues (non-living microbial products) although such materials could represent an important sink of glucose that is prone to stabilization as soil organic matter. We examined the dynamics of microbial residue formation from a short tracer experiment with frequent samplings over 72 h, and conducted a meta-analysis of previously published glucose tracing studies to assess the generality of these experimental results. Both our experiment and meta-analysis indicated 30–34% of amended glucose-C ( 13 C or 14 C) was in the form of residues within the first 6 h of substrate addition. We expand the conventional efficiency calculation to include residues in both the numerator and denominator of efficiency, thereby deriving a novel metric of the potential persistence of glucose-C in soil as living microbial biomass plus residues (‘carbon stabilization efficiency’). This new metric indicates nearly 40% of amended glucose-C persists in soil 180 days after amendment, the majority as non-biomass residues. Starting microbial biomass and clay content emerge as critical factors that positively promote such long term stabilization of labile C. Rapid residue production supports the conclusion that non-growth maintenance activity can illicit high demands for C in soil, perhaps equaling that directed towards growth, and that residues may have an underestimated role in the cycling and sequestration potential of C in soil.

Geyer, Kevin (ORCID:0000000252182745)↗
DOE OSTI2024

The Impact of Sorbent Amendments for Mercury Remediation on the Viability of Soil Microorganisms

Mercury (Hg) remediation across contaminated environments in the United States is an ongoing project. As part of the Hg cleanup strategy at East Fork Poplar Creek (EFPC), located in Oak Ridge, TN, the deployment of sorbents is considered. However, the impact of sorbents on soil microorganisms is poorly understood. In this study, we investigated the effect of sorbents on soil microorganism viability and biofilm formation to assess soil health during sorbent application for Hg remediation. We specifically investigated the effect of two engineered sorbents, Organoclay PM-199 and Organoclay MRM (which are manufactured from clay minerals formulated for various remediation applications), on two gram-negative organisms ( Serratia marcescens and Burkholderia thailandensis ) isolated from the Hg-contaminated EFPC bank soil. Pure cultures of S. marcescens or B. thailandensis were amended with 5% (w/v) and 25% (w/v) PM-199 and MRM, respectively, for 9 days. The samples were harvested, and bacterial cell viability was determined using a BacLight staining kit. Results showed that the growth of sorbent-amended S. marcescens was inhibited in contrast to that of unamended control. Furthermore, biochemical assays were used to analyze bacterial biofilm formation and integral biofilm components. Our results suggest that biofilm formation by sorbent-amended S. marcescens was negatively affected. In contrast, B. thailandensis amended with low concentrations of MRM showed enhanced growth and notable differences in biofilm morphology. These results suggest that the use of organoclay PM-199 and MRM at higher concentrations in field studies may hinder the growth of specific soil microorganisms.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Advancing quantitative models of soil microbiology, ecology, and biochemistry

Rapid advances in soil biology are increasingly reflected in mathematical models. From molecular to global scales, models contribute to fundamental understanding and prediction of critical soil processes, such as carbon sequestration. Recent models explicitly incorporate microbial control over soil carbon and nutrient cycling, an approach that offers greater biological realism but raises new challenges in model parameterization and stability. Although they have proliferated at community and ecosystem scales, microbial-explicit models have yet to be incorporated into most Earth system models. Applying soil models across scales requires integration with data to support parameterization and validation using approaches such as Bayesian data assimilation. In conclusion, to catalyze future progress, we recommend breaking down barriers between modeling and empirical disciplines while broadening access to the computational infrastructure that supports soil biological modeling.

Xie, Wally↗
DOE OSTI2022

Quantifying the drivers of ecosystem fluxes and water potential across the soil-plant-atmosphere continuum in an arid woodland

Dryland ecosystems occupy a vast swath of the terrestrial land surface and exert a sizeable impact on the cycling of carbon and water globally. These biomes are characterized by tightly coupled carbon and water cycles that respond rapidly to transient pulses in water availability. However, there exist many mechanistic uncertainties regarding the environmental drivers of, and linkages between, plant and ecosystem processes. Thus, drylands are often poorly represented in many vegetation and land surface models. An enhanced understanding of dryland ecosystem function is limited by the lack of long-term, co-located, and frequent measurements of plant and ecosystem processes. At a piñon-juniper woodland in southeastern Utah, USA, we collected a continuous dataset of meteorological conditions, soil water potential from surface to bedrock, tree water potential, and ecosystem carbon and water fluxes from eddy covariance. We found that predawn and midday tree water potential and daily ecosystem fluxes were highly sensitive to fluctuations in soil water availability, particularly in shallower layers, and that daytime variability in atmospheric drivers only loosely controlled these processes. The strong connections between shallow soil water potential, tree water potential, and ecosystem fluxes occurred because of the dominant role of precipitation pulses in driving vegetation activity, as even small pulses of moisture stimulated shallow soil water potential, tree water potential, and evapotranspiration for between 1 and 2 weeks. Carbon fluxes (net ecosystem exchange and gross primary productivity) were sensitive to precipitation pulses for longer, up to 3 weeks. Our results highlight that improved monitoring and sensing of shallow soil moisture can greatly enhance our understanding of dryland ecosystem function. Here, a better mechanistic understanding of the impacts of precipitation pulses is also needed to improve vegetation modeling of dryland ecosystems.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Fungal necromass presents a high potential for Mercury immobilization in soil

Past industrial activities have generated many contaminated lands from which Mercury (Hg) escapes, primarily by volatilization. Current phytomanagement techniques aim to limit Hg dispersion by increasing its stabilization in soil. Although soil fungi represent a source of Hg emission associated with biovolatilization mechanisms, there is limited knowledge about how dead fungal residues (i.e., fungal necromass) interact with soil Hg. This study determined the Hg biosorption potential of fungal necromass and the chemical drivers of passive Hg binding with dead mycelia. Fungal necromass was incubated under field conditions with contrasting chemical properties at a well-characterized Hg phytomanagement experimental site in France. After four months of incubation in soil, fungal residues passively accumulated substantial quantities of Hg in their recalcitrant fractions ranging from 400 to 4500 μg Hg/kg. In addition, infrared spectroscopy revealed that lipid compounds explained the amount of Hg biosorption to fungal necromass. In conclusion, based on these findings, we propose that fungal necromass is likely an important factor in Hg immobilization in soil.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Partitioning sources of CO 2 emission after soil wetting using high-resolution observations and minimal models

Wetting dry soil triggers a pulse of microbial respiration. Respiration pulses after wetting can be complex, evolving through several stages before subsiding—possibly reflecting contributions from multiple carbon (C) sources. In this work we hypothesized that respiration after wetting combines C from cellular sources (notably trehalose, a cellular osmo-protectant) and soluble extracellular C made available by the physical effects of wetting, with cellular sources contributing early during the pulse and extracellular C dominating later. We tested this hypothesis by making measurements of soil respiration, microbial biomass, trehalose, and water extractable organic C after wetting dry soil in the laboratory. We then devised several alternative minimal models to evaluate the potential contributions of trehalose and extracellular C to the respiration pulse. We found that the chloroform-labile fraction of the microbial biomass was comprised of 50% trehalose in dry soil. Both trehalose and water extractable organic C pools declined rapidly after wetting; trehalose disappeared within 3 h of water addition. Chloroform-labile glucose increased 3 h after water addition and then declined, suggesting rapid hydrolysis of trehalose and consumption of the resulting glucose. Respiration dynamics after wetting could be best explained by models that included two C sources, combining rapid metabolism of trehalose with slower consumption of extracellular soluble C. These results suggest that pulses of respiration after wetting reflect both osmolyte consumption within the microbial biomass and enhanced extracellular C availability; hence, models of microbial drought response must account for both processes to fully resolve soil C dynamics.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Meeting report: International soil virus conference 2024

The research field of soil viral ecology continues to advance rapidly as the roles of viruses in the functioning of soil ecosystems are increasingly recognized. To address recent developments in the field, the second International Soil Virus Conference was held in Livermore, California, USA, from June 25 to 27th, 2024, providing soil viral ecologists the opportunity to share new findings and suggest guidelines for future research, while encouraging international scientific discussion and collaboration. The meeting was held in person with sessions simultaneously streamed online. Fifty researchers attended from ten different countries and spanned a wide range of subfields and career stages. A total of 21 oral presentations were presented, followed by discussions covering key themes in soil viral research. This report summarizes the main takeaways and recommendations from the talks and discussions.

60 APPLIED LIFE SCIENCES↗