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NASA NTRS2018

Climatespark: an In-Memory Distributed Computing Framework for Big Climate Data Analytics

The unprecedented growth of climate data creates new opportunities for climate studies, and yet big climate data pose a grand challenge to climatologists to efficiently manage and analyze big data. The complexity of climate data content and analytical algorithms increases the difficulty of implementing algorithms on high performance computing systems. This paper proposes an in-memory, distributed computing framework, ClimateSpark, to facilitate complex big data analytics and time-consuming computational tasks. Chunking data structure improves parallel I/O efficiency, while a spatiotemporal index is built for the chunks to avoid unnecessary data reading and preprocessing. An integrated, multi-dimensional, array-based data model (ClimateRDD) and ETL operations are developed to address big climate data variety by integrating the processing components of the climate data lifecycle. ClimateSpark utilizes Spark SQL and Apache Zeppelin to develop a web portal to facilitate the interaction among climatologists, climate data, analytic operations and computing resources (e.g., using SQL query and Scala/Python notebook). Experimental results show that ClimateSpark conducts different spatiotemporal data queries/analytics with high efficiency and data locality. ClimateSpark is easily adaptable to other big multiple- dimensional, array-based datasets in various geoscience domains.

Hu, Fei↗
NASA NTRS2018

Development and Implementation of Aseptic Operations for the MOMA-Mass Spectrometer

The ExoMars 2020 Rover is a life detection mission, and is classified as Planetary Protection (PP) Mission Category IVb, the first IVb mission since the Viking missions. Mars Organic Molecule Analyzer Mass Spectrometer (MOMA-MS) is a life detection instrument for the rover. To meet the stringent bioburden requirement of 0.03 spore/m2, the MS is subjected to Dry Heat Microbial Reduction (DHMR) to decrease the bioburden from a measured 88 spores/m2 to 0.009 spores/m2. After DHMR, exposure of the sample path must be kept to an absolute minimum and requires aseptic operations. Aseptic operations include determining the safe exposure time based on the surface area of exposure and particle fallout expected in the aseptic ISO class 5 workspace, preparing an aseptic ISO class 5 workspace, and using sterile garments and tools. During the exposure activity the environment is monitored with active and passive fallout for bioburden and real time airborne particle counts. Sterile tools are handled by a two person team so the operator touches only the tool and not the exterior surfaces of the sterilization pouch, and a sterile operating field is established as a safe place to organize tools or parts during the aseptic operations. In cases where aseptic operations are not feasible, localized DHMR is used after exposure. Any breach in the PP cleanliness can necessitate repeating instrument level DHMR, which not only has significant cost and schedule implications, but also is a risk to hardware that is not rated for repeated long exposures to high temperatures.

Aseptic processing↗
NASA NTRS2018

Establishing and Monitoring an Aseptic Workspace

When are aseptic operations necessary? In order to meet certain bioburden requirements, some components must undergo dry heat microbial reduction (DHMR) or other sterilizing procedures. If sensitive surfaces must be re-exposed after DHMR, this could compromise the bioburden levels. Recontaminating sterilized surfaces could be costly both in time by requiring repeated DHMR and risk to the hardware, which may not be compatible with repeated high temperature bakes. In order to prevent recontamination of the sensitive surfaces, an aseptic environment and sterile technique must be employed. Aseptic environments mean working in a space with almost no detectable bioburden in the air or on surfaces. Ideally, DHMR happens as late as possible to avoid requiring aseptic operations, as it can be considered a high-risk operations. Preparing the cleanroom for aseptic operations Establishing an ISO (International Organization for Standardization) class 5 space to minimize airborne particles. Maintain low bioburden in the cleanroom by using biocidal cleaners. Using multiple biocidal techniques decreases the likelihood of selecting for resistant microorganisms. 70% Isopropyl Alcohol (IPA) denatures the proteins in a microorganism (note: 70% IPA is better at killing microorganisms than 100% IPA) 7% hydrogen peroxide: damages DNA and proteins through oxygen radical damage. Ultraviolet-C (UV-C) lamps: causes crosslinking in DNA which prevents replication. Monitor cleanroom regularly for bioburden trending: Standard bioassay: Swab or wipe samples of cleanroom surfaces processed for colony forming unity (viable or spore selected); Rapid bioassay: Adenosine triphosphate (ATP) or Limulus amebocyte lysate (LAL) for a bioburden snapshot. High levels can signal an immediate re-cleaning before standard bioassay samples are taken. Airborne monitoring: Active (pulling air through a filter) or passive (particle fallout) for bioburden. Verify bioburden levels just before aseptic operation. Test hardware and cleanroom surfaces and air 3 days before the planned aseptic operation. Rapid bioburden just before aseptic operation to ensure room was not re-contaminated. Preparing personnel and tools: Personnel training. Everyone in the cleanroom: Standard cleanroom certification Everyone on the team: 1 day Planetary Protection overview. Aseptic operators only: Half-day aseptic operations training. Covers sterile garmenting/gloves, Sterile handling with a focus on contact transfer risk, tool/GSE preparation, and two-operator system for opening sterilized tools/components. Tool sterilization: All tools to be used during an aseptic operation need to be identified. Compatible tools are sterilized by DHMR or Autoclave. Double wrapped so that the exterior bag can be handled by a non-sterile operator, and the sterile. Tools that are not compatible with high heat do not come in contact with sensitive surfaces: either substitutes are found, or tools are isolated by wrapping in sterile foil. During an aseptic operation. Pre-task to make sure everyone understands the operations, who is handling what, and when the most critical surfaces will be exposed. Monitoring during the operation. Bioburden: active and passive airborne bioburden sampling, glove-tip dabs onto a plate after completion of operation (3 days for results). Particles: real time particle counter constantly running, with alarm for exceeding ISO 5 conditions.

aseptic processing↗
NASA NTRS2018

NASA Provides the Capability to Deliver Near Real-Time JPSS Data to Users in Order to Monitor Time-Sensitive Applications Such as Wildfires, Floods, Volcanic Eruptions, Tropical Cyclones and Extreme Weather Events

NASA's Land, Atmosphere Near real-time Capability for EOS (Earth Observing System) (LANCE https://earthdata.nasa.gov/lance) serves near real time (NRT) data to monitor time sensitive applications such as monitoring wildfires, floods, volcanic eruptions, tropical cyclones and extreme weather events. It currently serves data and imagery from the Visible Infrared Imager Radiometer Suite (VIIRS) and Ozone Mapping and Profiler Suite (OMPS) S NPP (Suomi National Polar-orbiting Partnership) instruments and is in the process of integrating continuity data products from VIIRS and OMPS onboard the Joint Polar Satellite System (JPSS), via the JPSS data Hub, to continue to meet the needs of agencies, scientists and members of the general public. NASA's Earth Science Division (ESD) sponsored the EOSDIS development of LANCE in 2009 to provide a central point of access to high quality NRT data products and imagery for applications users. LANCE makes data available to the public within 3 hours of satellite observation and imagery within 4-5 hours of satellite observation. Full resolution browse imagery from LANCE are provided through the Global Imagery Browse Services (GIBS) which also fuels NASA's Worldview tool so that users can interactively browse near real time data. This data supports time critical applications and allows users to view current natural hazards and events and animate the imagery over time.

Near real time↗
NASA NTRS2019

Understanding the Impacts of Soil Moisture Initial Conditions on NWP in the Context of Land-Atmosphere Coupling

The role of soil moisture in NWP has gained more attention in recent years, as studies have demonstrated impacts of land surface states on ambient weather from diurnal to seasonal scales. However, soil moisture initialization approaches in coupled models remain quite diverse in terms of their complexity and observational roots, while assessment using bulk forecast statistics can be simplistic and misleading. In this study, a suite of soil moisture initialization approaches is used to generate short-term coupled forecasts over the U.S. Southern Great Plains using NASA’s Land Information System (LIS) and NASA Unified WRF (NU-WRF) modeling systems. This includes a wide range of currently used initialization approaches, including soil moisture derived from ‘off-the-shelf’ products such as atmospheric models and land data assimilation systems, high-resolution land surface model spinups, and satellite-based soil moisture products from SMAP. Results indicate that the spread across initialization approaches can be quite large in terms of soil moisture conditions and spatial resolution, and that SMAP performs well in terms of heterogeneity and temporal dynamics when compared against high resolution land surface model and in-situ soil moisture estimates. Case studies are analyzed using the local land-atmosphere coupling (LoCo) framework that relies on integrated assessment of soil moisture, surface flux, boundary layer, and ambient weather, with results highlighting the critical role of inherent model background biases. In addition, simultaneous assessment of land vs. atmospheric initial conditions in an integrated, process-level fashion can help address the question of whether improvements in traditional NWP verification statistics are achieved for the right reasons.

Southern Great Plains↗
NASA NTRS2019

Progress and Challenges in Quantifying Wildfire Smoke Emissions, Their Properties, Transport, and Atmospheric Impacts

Wildfire is a natural and integral ecosystem process that is necessary to maintain species composition, structure, and ecosystem function. Extreme fires have been increasing over the last decades, which have a substantial impact on air quality, human health, the environment, and climate systems. Smoke aerosols can be transported over large distances, acting as pollutants that affect adjacent and distant downwind communities and environments. Fire emissions are a complicated mixture of trace gases and aerosols, many of which are short‐lived and chemically reactive, and this mixture affects atmospheric composition in complex ways that are not completely understood. We present a review of the current state of knowledge of smoke aerosol emissions originating from wildfires. Satellite observations, from both passive and active instruments, are critical to providing the ability to view the large‐scale influence of fire, smoke, and their impacts. Progress in the development of fire emission estimates to regional and global chemical transport models has advanced, although significant challenges remain, such as connecting ecosystems and fuels burned with dependent atmospheric chemistry. Knowledge of the impact of smoke on radiation, clouds, and precipitation has progressed and is an essential topical research area. However, current measurements and parameterizations are not adequate to describe the impacts on clouds of smoke particles (e.g., CNN, INP) from fire emissions in the range of representative environmental conditions necessary to advance science or modeling. We conclude by providing recommendations to the community that we believe will advance the science and understanding of the impact of fire smoke emissions on human and environmental health, as well as feedback with climate system.

I N Sokolik↗
NASA NTRS1995

Fine Pitch Grids for an X-Ray Solar Imaging Spectrometer Fabricated by Optical Lithography and XeF2 Etching

Fine-pitch, sub-collimating X-ray grids have been developed for an instrument in the High Energy Solar Spectroscopic Imager , a proposed NASA mission. In addition to high-energy x- rays, the instrument requires collimation of photons with energies of less than 4 keV such that free-standing grids are required that have no material between the grid slats. Fabrication of these grids is described.

x-ray↗
NASA NTRS2018

A GNSS Receiver for Small-Sats Enabling Precision POD, Radio Occultations and Reflections

A low cost, low power, and low mass GNSS receiver (called Cion) has been developed and is currently flying on the CICERO cubesats. The receiver was designed in less than a year by JPL for Tyvak and GeoOptics for use in the GeoOptics CICERO constellation and leverages 25 years of JPL GNSS reciever design experience. Cion uses a commercial off-the-shelf (COTS) computer along with existing space qualified RF down-converters, software, and firmware to produce atmospheric Radio Occultation (RO) data. By combining a FPGA with dual core ARM processor and an embedded system controller, the Xilinx Zynq processor is an enabling technology that provides a customizable digital signal processing platform integrated into the computer (System on a chip) and enables off-the-shelf hardware to become the main engine behind this software defined radio. Using Linux for the on-board computer allows for fast development times and liberal use of existing open source software libraries. The parts of the receiver that require realtime implementation are performed in the Field Programmable Gate Array (FPGA), which can also be reprogrammed in flight. While the Zynq is not rad hard, the silicon on insulator (SOI) technology is rad tolerant ‘by accident’, allowing for its use in many space-based applications. Early results show that the Cion is working as designed, has demonstrated the first known GLONASS occultations, and obtains high quality atmospheric profiles with excellent lower troposphere penetration (near Earth’s surface).

Young, Larry↗
NASA NTRSDate not supplied

Pointing, Acquisition, and Tracking for the TBIRD Cubesat Mission: System Design and Pre-Flight Results

The Terabyte InfraRed Delivery (TBIRD) program will establish a communication link from a nanosatellite in low-Earth orbit to a ground station at burst rates up to 200 Gbps. The TBIRD payload is currently in the process of integrating with the 6-U CubeSat host bus and pre-flight testing has been completed. An overview of the pointing, acquisition, and tracking system for TBIRD is provided as well as a summary of results from pre-flight testing. TBIRD relies on the spacecraft bus to implement fine pointing corrections supplied by its quad sensor at a rate of 10 Hz. The measured accuracy of pointing feedback is about 10μrad RMS per axis. A custom optical assembly was designed for transmitter/receiver alignment stability which was measured to be within 25μrad two-axis through environmental testing. With TBIRD feedback in the loop, single axis pointing accuracy of the downlink is predicted to be about 30μrad RMS.

space communications↗
NASA NTRSDate not supplied

Analysis of the Value Added When Deploying a Model-Based Approach for the Validation and Verification of the Medical Database Software

The Medical Database (MD) is a virtual repository consisting of two software components: Medical Item Database (MedID) and the Evidence Library (EL). MedID consists of engineering data and associated information for specific medical resource items (e.g., pharmaceutical, medical devices, and supporting components), while the EL is a tool which provides all of the medical evidence necessary. The MD will 1) serve as the single “source of truth” for the Informing Mission Planning via Analysis of Complex Tradespaces (IMPACT) tool suite for both medical evidence and medical resource engineering data and 2) will be used in conjunction with the IMPACT tool suite to inform research prioritizations and perform systematic trade study evaluations to aid stakeholders in making informed decisions regarding simulated human spaceflight missions. The MD project used a Model-Based Systems Engineering (MBSE) approach to support all life cycles of the software development, while in parallel the human factors engineering team used modeling to support Human Centered Design (HCD) strategies in an effort to improve software usability. HCD is a frequently used approach in design frameworks that develops resolutions to complexities and challenges by involving the human perspective in all steps of the problem-solving process. By integrating the model-based approaches used for systems engineering and human factors activities, the project is able to leverage the model-based artifacts originally created for HCD activities for system level and human factors validation. In this presentation, our team highlights the value added when leveraging these model-based artifacts to support the on-going verification and validation activities.

C. Laing↗
NASA NTRSDate not supplied

Microscopy Methods for Life Detection on Ocean Worlds

On Earth, light microscopy is commonly used in microbiology to identify organisms and observe their interactions with the environment; this makes it an attractive technique for in situ life detection methods on ocean worlds. As a standalone technique, brightfield microscopy, while able to provide important contextual information, has limited usefulness as a life detection technique because it is often challenging to differentiate between abiotic and biotic particles based solely on their size and shape, which may introduce risks of false positive or false negative interpretations. However, these risks can be reduced by combining brightfield microscopy with fluorescence microscopy to provide a method that correlate sample chemistry with sample morphology. In this work, we have used the Luminescence Imager for Exploration (LIfE), a brightfield and epifluorescence microscope with an integrated sample processing system (matured under the Concepts for Ocean worlds Life Detection Technology and Instrument Concepts of Europa Exploration programs) to develop methods that increase the fidelity of in situ microscopy life detection measurements through two main approaches. First, native fluorescence is excited in molecules that contain aromatic moieties such as proteins (using deep UV excitation), and energy carrying molecules and endogenous chromophores (using visible-light excitation), to correlate the location of these species with cell-like structural features (brightfield imaging). Second, fluorescent stains are used to selectively image cells and cell fragments by targeting proteins, lipids, and nucleic acids. We discuss the results of tests, obtained using ocean world analog samples, that have examined trades associated with implementing these methods autonomously in planetary missions, including the intrinsic properties of candidate fluorescence dyes and long-term storage and radiation stability.

Pavel E. Z. Klier↗
NASA NTRSDate not supplied

Investigation of Coupled Land-Atmosphere Carbon Dynamics and Seasonal Carbon Forecast Skill

In this talk, I will present recent efforts to explore coupled land-atmosphere carbon dynamics and carbon cycle predictability. First, the impact of a regional drought on land and atmospheric carbon was studied by imposing an idealized spring drought in coupled land‐atmosphere ensemble simulations. Through drought-induced impact on remote meteorology, the drought alters land’s productivity not only in the drought area but also in the adjacent areas. The atmospheric CO2 anomalies extend to an area up to three times of that of the imposed drought, which suggests that atmospheric transport needs to be considered in the interpretation of drought‐induced carbon anomalies. Increase in column‐averaged monthly CO2 by the imposed drought is at the edge of the uncertainty from single soundings of current greenhouse gas observing satellites. Secondly, the seasonal carbon forecast skill was explored using NASA’s subseasonal-to-seasonal (S2S) ensemble forecast and a terrestrial biosphere model. The result demonstrates an ability to accurately predict spring-summer carbon uptake at multi-month leads in the Northern Hemisphere mid- and high latitude land. The skill appears to be achieved by accurate forecasts of snow removal timing as well as proper initialization of carbon and nitrogen states. Additionally, I will briefly discuss other ongoing research activities to improve hydrometeorological prediction by integrating biogeochemical processes, to evaluate forecast skill of wildfire, and to apply subseasonal forecasts to water resources management.

Eunjee Lee↗
NASA NTRSDate not supplied

Microscopy Methods for Life Detection on Ocean Worlds

On Earth, light microscopy is commonly used in microbiology to identify organisms and observe their interactions with the environment; this makes it an attractive technique for in situ life detection methods on ocean worlds. As a standalone technique, brightfield microscopy, while able to provide important contextual information, has limited usefulness as a life detection technique because it is often challenging to differentiate between abiotic and biotic particles based solely on their size and shape, which may introduce risks of false positive or false negative interpretations. However, these risks can be reduced by combining brightfield microscopy with fluorescence microscopy to provide a method that correlate sample chemistry with sample morphology. In this work, we have used the Luminescence Imager for Exploration (LIfE), a brightfield and epifluorescence microscope with an integrated sample processing system (matured under the Concepts for Ocean worlds Life Detection Technology and Instrument Concepts of Europa Exploration programs) to develop methods that increase the fidelity of in situ microscopy life detection measurements through two main approaches. First, native fluorescence is excited in molecules that contain aromatic moieties such as proteins (using deep UV excitation), and energy carrying molecules and endogenous chromophores (using visible-light excitation), to correlate the location of these species with cell-like structural features (brightfield imaging). Second, fluorescent stains are used to selectively image cells and cell fragments by targeting proteins, lipids, and nucleic acids. We discuss the results of tests, obtained using ocean world analog samples, that have examined trades associated with implementing these methods autonomously in planetary missions, including the intrinsic properties of candidate fluorescence dyes and long-term storage and radiation stability.

Pavel E Z Klier↗
NASA NTRSDate not supplied

Exploring Coupled Land-Atmosphere Carbon Dynamics and Seasonal Carbon Forecast Skill

Terrestrial biosphere is an integral part of the climate system and plays a vital role in controlling the dynamics of the Earth’s carbon cycle. In this talk, I will present recent efforts to explore coupled land-atmosphere carbon dynamics and seasonal carbon cycle predictability. First, by imposing an idealized spring drought in coupled land‐atmosphere ensemble simulations, we investigated the impact of a regional drought on land and atmospheric carbon. Through the drought-induced impact on remote meteorology, the capability of the land’s carbon uptake is altered in both the drought area and the adjacent areas. The induced anomalies of the atmospheric CO2 extend to an area up to three times of that of the imposed drought, which suggests that atmospheric transport needs to be considered in the interpretation of the drought impact on carbon anomalies. Increase in column‐averaged monthly CO2 is at the edge of the uncertainty from single soundings of current greenhouse gas observing satellites. Secondly, the seasonal carbon forecast skill was explored using NASA’s subseasonal-to-seasonal (S2S) ensemble forecast and terrestrial biosphere model. The result demonstrates an ability to accurately predict spring-summer carbon uptake in the Northern Hemisphere mid and high latitude land at multi-month leads. The prediction skill appears to be achieved by accurate forecasts of snow removal timing, which provides a latent predictability to the forecast system, and by proper initialization of carbon and nitrogen states. Additionally, I will briefly discuss other ongoing research to improve hydrometeorological prediction by integrating biogeochemical processes, to evaluate forecast skill of wildfire carbon, and to apply subseasonal forecasts to water resources management.

Eunjee Lee↗
NASA NTRSDate not supplied

Finite Element Based Model of Fiber-optic Strain Sensor Mounted on a Semi-monocoque Structure

Fiber-optic strain sensing (FOSS) provides an opportunity for additional awareness and can enable other mitigations such as flutter suppression or gust load alleviation but requires an accurate computational model as part of a design process that integrates structures and controls. A modeling approach for fiber-optic strain sensors has been developed using a shell element formulation in a detailed finite element model. The new FOSS modeling approach is designed to better scale to more complex realistic structures and fiber layouts than previous approaches. The modeling method was applied to the X-56A vehicle and results were compared to experimental static ground-test data. Additionally, the experimental sensor noise of these fiber optic sensors was assessed for the correlations in time and correlations along the fiber. The noise does show significant correlations both in time and along the fibers. These correlations of the noise should also be considered in modeling and assessing algorithms that will use FOSS.

Jeffrey Ouellette↗
NASA NTRSDate not supplied

Bridging the Last Mile with Open-Source Advancements: Empowering Communities through Fusion of Aerosol Optical Depth (AOD) Products from Multi-Satellite Sensors

Aerosol Optical Depth (AOD) is a crucial parameter for understanding atmospheric aerosol distribution and their impact on climate and air quality. With the growing number of Earth observation satellites, there is an abundance of AOD products derived from various sensors onboard both geostationary and low-orbit satellites. The availability of multiple datasets provides an opportunity to harness the strengths of each sensor and create comprehensive and accurate AOD datasets for climate and air quality studies at different temporal and spatial scales. Our NASA aerosol MEaSURES project has made significant strides in recent years by undertaking the ambitious task of developing an open-source package tailored for fusing AOD products from different sources. The package is based on OOP (Object-Oriented Programming) design and is implemented in Python modules. Generic interfaces enable easy inclusion of large and heterogeneous data. The package may be utilized to produce harmonized AOD datasets with enhanced spatial and temporal coverage. The latest version of the package is able to process and integrate the dark-target AOD data from six different sensors: AHI Himawari-8, ABI GOES-West, ABI GOES-East, MODIS AQUA, MODIS TERRA, and VIIRS SNPP. Rigorous validation and intercomparison studies have been performed to assess the accuracy and reliability of the fused AOD product against ground-based measurements and reference datasets. The open-source nature of the developed package ensures transparency, reproducibility, and community engagement. The research community and stakeholders can access, contribute to, and further improve the fusion methodology, making it adaptable to other studies, or expanding it to include new satellite data as they become available. In this poster presentation, we will introduce the accomplishments and challenges faced during the development of the open-source package for AOD data fusion, and demonstrate the advantages of combining AOD products from the six aforementioned satellite sensors. The presentation aims to foster discussions, collaborations, and future directions in integrating Earth observation and remote sensing data, which may contribute to a better understanding of atmospheric aerosols and their impacts on our environment.

Zhaohui Zhang↗
NASA NTRSDate not supplied

Finite Element Based Model of Fiber-optic Strain Sensor Mounted on a Semi-monocoque Structure

Fiber-optic strain sensing (FOSS) provides an opportunity for additional awareness and can enable other mitigations such as flutter suppression or gust load alleviation but requires an accurate computational model as part of a design process that integrates structures and controls. A modeling approach for fiber-optic strain sensors has been developed using a shell element formulation in a detailed finite element model. The new FOSS modeling approach is designed to better scale to more complex realistic structures and fiber layouts than previous approaches. The modeling method was applied to the X-56A vehicle and results were compared to experimental static ground-test data. Additionally, the experimental sensor noise of these fiber optic sensors was assessed for the correlations in time and correlations along the fiber. The noise does show significant correlations both in time and along the fibers. These correlations of the noise should also be considered in modeling and assessing algorithms that will use FOSS.

Jeffrey Ouellette↗