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At least 955 records · Page 53

The adaptive mesh method based on HOC difference scheme for convection diffusion equations with boundary layers

In this paper, an adaptive mesh method is proposed to generate orthogonal nonuniform mesh for 2D rectangular computational domain. The algorithm adopts the dimension split idea which redistribute the mesh on each direction sequently. This approach efficiently decreases the difficultly of algorithm and enables the adapted mesh to be orthogonal. The adaptive mesh method can redistribute the mesh based on the solution without specifying the location of the boundary layer or the grid distribution function to generate the nonuniform mesh in advance. To verify the effectiveness and robustness of the algorithm, the presented method combined with the HOC difference scheme on nonuniform grid is used to solve the 1D and 2D convection diffusion problems with boundary layers. Besides, the multigrid method is used to accelerate the iterative convergence speed. The numerical solutions of adaptive mesh is more flexible than uniform or nonuniform grids methods if the location of the boundary layers is unknown in advance.

97 MATHEMATICS AND COMPUTING↗

Low-Rank Incremental Methods for Computing Dominant Singular Subspaces

Computing the singular values and vectors of a matrix is a crucial kernel in numerous scientific and industrial applications. As such, numerous methods have been proposed to handle this problem in a computationally efficient way. This paper considers a family of methods for incrementally computing the dominant SVD of a large matrix A. Specifically, we describe a unification of a number of previously disparate methods for approximating the dominant SVD via a single pass through A. We tie the behavior of these methods to that of a class of optimization-based iterative eigensolvers on A'*A. An iterative procedure is proposed which allows the computation of an accurate dominant SVD via multiple passes through A. We present an analysis of the convergence of this iteration, and provide empirical demonstration of the proposed method on both synthetic and benchmark data.

99 GENERAL AND MISCELLANEOUS↗

Nuclear reactor transient analysis via a quasi-static kinetics Monte Carlo method

The predictor-corrector quasi-static (PCQS) method is applied to the Monte Carlo (MC) calculation for reactor transient analysis. To solve the transient fixed-source problem of the PCQS method, fission source iteration is used and a linear approximation of fission source distributions during a macro-time step is introduced to provide delayed neutron source. The conventional particle-tracking procedure is modified to solve the transient fixed-source problem via MC calculation. The PCQS method with MC calculation is compared with the direct time-dependent method of characteristics (MOC) on a TWIGL two-group problem for verification of the computer code. Then, the results on a continuous-energy problem are presented.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Effects of cosine tapering window on quantum phase estimation

Here, we provide a modification to the quantum phase estimation algorithm (QPEA) [Abrams and Lloyd, Phys. Rev. Lett. 83, 5162 (1999); Cleve et al., Proc. R. Soc. A 454, 339 (1998); Nielsen and Chuang, Quantum computation and quantum information, 2002.] inspired by classical windowing methods for spectral density estimation. From this modification we obtain an upper bound in the cost that implies a cubic improvement with respect to the algorithm's error rate. Numerical evaluation of the costs also demonstrates an improvement. Moreover, with similar techniques, we detail an iterative projective measurement method for ground state preparation that gives an exponential improvement over previous bounds using QPEA. Numerical tests that confirm the expected scaling behavior are also obtained. For these numerical tests we have used a lattice Thirring model as testing ground. Using well-known perturbation theory results, we also show how to more appropriately estimate the cost scaling with respect to state error instead of evolution operator error.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

MBIR: A cryo-ET 3D reconstruction method that effectively minimizes missing wedge artifacts and restores missing information

Cryo-Electron Tomography (cryo-ET) has become an essential technique in revealing cellular and macromolecular assembly structures in their native states. However, due to radiation damage and the limited tilt range, cryo-ET suffers from low contrast and missing wedge artifacts, which limits the tomograms to low resolution and hinders further biological interpretation. We applied the Model-Based Iterative Reconstruction (MBIR) method to obtain tomographic 3D reconstructions of experimental cryo-ET datasets and demonstrated the advantages of MBIR in contrast improvement, missing wedge artifacts reduction, missing information restoration, and subtomogram averaging compared with other reconstruction approaches. Considering the outstanding reconstruction quality, MBIR has a great potential in the determination of high resolution biological structures with cryo-ET.

59 BASIC BIOLOGICAL SCIENCES↗

TH-CD-207A-07: Prediction of High Dimensional State Subject to Respiratory Motion: A Manifold Learning Approach

Purpose: The development of high dimensional imaging systems (e.g. volumetric MRI, CBCT, photogrammetry systems) in image-guided radiotherapy provides important pathways to the ultimate goal of real-time volumetric/surface motion monitoring. This study aims to develop a prediction method for the high dimensional state subject to respiratory motion. Compared to conventional linear dimension reduction based approaches, our method utilizes manifold learning to construct a descriptive feature submanifold, where more efficient and accurate prediction can be performed. Methods: We developed a prediction framework for high-dimensional state subject to respiratory motion. The proposed method performs dimension reduction in a nonlinear setting to permit more descriptive features compared to its linear counterparts (e.g., classic PCA). Specifically, a kernel PCA is used to construct a proper low-dimensional feature manifold, where low-dimensional prediction is performed. A fixed-point iterative pre-image estimation method is applied subsequently to recover the predicted value in the original state space. We evaluated and compared the proposed method with PCA-based method on 200 level-set surfaces reconstructed from surface point clouds captured by the VisionRT system. The prediction accuracy was evaluated with respect to root-mean-squared-error (RMSE) for both 200ms and 600ms lookahead lengths. Results: The proposed method outperformed PCA-based approach with statistically higher prediction accuracy. In one-dimensional feature subspace, our method achieved mean prediction accuracy of 0.86mm and 0.89mm for 200ms and 600ms lookahead lengths respectively, compared to 0.95mm and 1.04mm from PCA-based method. The paired t-tests further demonstrated the statistical significance of the superiority of our method, with p-values of 6.33e-3 and 5.78e-5, respectively. Conclusion: The proposed approach benefits from the descriptiveness of a nonlinear manifold and the prediction reliability in such low dimensional manifold. The fixed-point iterative approach turns out to work well practically for the pre-image recovery. Our approach is particularly suitable to facilitate managing respiratory motion in image-guide radiotherapy. This work is supported in part by NIH grant R01 CA169102-02.

60 APPLIED LIFE SCIENCES↗

Final Scientific/Technical Report

In this work, we have built upon our results from previous DOE funding (DEFG 0204ER25655), where we developed new and more efficient methods for solving certain optimization problems with many inequality constraints. This past work resulted in efficient algorithms (and analysis of their convergence) for linear programming, convex quadratic programming, and the training of support vector machines. The algorithms are based on using constraint reduction in interior point methods: at each iteration we consider only a smaller subset of the inequality constraints, focusing on the constraints that are close enough to be relevant. Surprisingly, we have been able to show theoretically that such algorithms are globally convergent and to demonstrate experimentally that they are much more efficient than standard interior point methods.

97 MATHEMATICS AND COMPUTING↗

A fast tomographic method for searching the minimum free energy path

Minimum Free Energy Path (MFEP) provides a lot of important information about the chemical reactions, like the free energy barrier, the location of the transition state, and the relative stability between reactant and product. With MFEP, one can study the mechanisms of the reaction in an efficient way. Due to a large number of degrees of freedom, searching the MFEP is a very time-consuming process. Here, we present a fast tomographic method to perform the search. Our approach first calculates the free energy surfaces in a sequence of hyperplanes perpendicular to a transition path. Based on an objective function and the free energy gradient, the transition path is optimized in the collective variable space iteratively. Applications of the present method to model systems show that our method is practical. It can be an alternative approach for finding the state-to-state MFEP.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Fast Acting Eddy Current Driven Valve for Massive Gas Injection on ITER

Tokamak plasma disruptions present a significant challenge to ITER as they can result in intense heat flux, large forces from halo and eddy currents, and potential first-wall damage from the generation of multi-MeV runaway electrons. Massive gas injection (MGI) of high Z material using fast acting valves is being explored on existing tokamaks and is planned for ITER as a method to evenly distribute the thermal load of the plasma to prevent melting, control the rate of the current decay to minimize mechanical loads, and to suppress the generation of runaway electrons. A fast acting valve and accompanying power supply have been designed and first test articles produced to meet the requirements for a disruption mitigation system on ITER. The test valve incorporates a flyer plate actuator similar to designs deployed on TEXTOR, ASDEX upgrade, and JET [1 3] of a size useful for ITER with special considerations to mitigate the high mechanical forces developed during actuation due to high background magnetic fields. The valve includes a tip design and all-metal valve stem sealing for compatibility with tritium and high neutron and gamma fluxes.

Fast Acting Eddy current↗

Stochastic Trust-Region Algorithm in Random Subspaces with Convergence and Expected Complexity Analyses

Here, this work proposes a framework for large-scale stochastic derivative-free optimization (DFO) by introducing STARS, a trust-region method based on iterative minimization in random subspaces. This framework is both an algorithmic and theoretical extension of a random subspace derivative-free optimization (RSDFO) framework, and an algorithm for stochastic optimization with random models (STORM). Moreover, like RSDFO, STARS achieves scalability by minimizing interpolation models that approximate the objective in low-dimensional affine subspaces, thus significantly reducing per-iteration costs in terms of function evaluations and yielding strong performance on largescale stochastic DFO problems. The user-determined dimension of these subspaces, when the latter are defined, for example, by the columns of so-called Johnson-Lindenstrauss transforms, turns out to be independent of the dimension of the problem. For convergence purposes, inspired by the analyses of RSDFO and STORM, both a particular quality of the subspace and the accuracies of random function estimates and models are required to hold with sufficiently high, but fixed, probabilities. Using martingale theory under the latter assumptions, an almost sure global convergence of STARS to a first-order stationary point is shown, and the expected number of iterations required to reach a desired first-order accuracy is proved to be similar to that of STORM and other stochastic DFO algorithms, up to constants.

97 MATHEMATICS AND COMPUTING↗

AUTOMATIC CLASSIFICATION OF VARIABLE STARS IN CATALOGS WITH MISSING DATA

We present an automatic classification method for astronomical catalogs with missing data. We use Bayesian networks and a probabilistic graphical model that allows us to perform inference to predict missing values given observed data and dependency relationships between variables. To learn a Bayesian network from incomplete data, we use an iterative algorithm that utilizes sampling methods and expectation maximization to estimate the distributions and probabilistic dependencies of variables from data with missing values. To test our model, we use three catalogs with missing data (SAGE, Two Micron All Sky Survey, and UBVI) and one complete catalog (MACHO). We examine how classification accuracy changes when information from missing data catalogs is included, how our method compares to traditional missing data approaches, and at what computational cost. Integrating these catalogs with missing data, we find that classification of variable objects improves by a few percent and by 15% for quasar detection while keeping the computational cost the same.

79 ASTRONOMY AND ASTROPHYSICS↗

Assessment of outdoor radiofrequency electromagnetic field exposure through hotspot localization using kriging-based sequential sampling

In this study, a novel methodology is proposed to create heat maps that accurately pinpoint the outdoor locations with elevated exposure to radiofrequency electromagnetic fields (RF-EMF) in an extensive urban region (or, hotspots), and that would allow local authorities and epidemiologists to efficiently assess the locations and spectral composition of these hotspots, while at the same time developing a global picture of the exposure in the area. Moreover, no prior knowledge about the presence of radiofrequency radiation sources (e.g., base station parameters) is required. After building a surrogate model from the available data using kriging, the proposed method makes use of an iterative sampling strategy that selects new measurement locations at spots which are deemed to contain the most valuable information—inside hotspots or in search of them—based on the prediction uncertainty of the model. The method was tested and validated in an urban subarea of Ghent, Belgium with a size of approximately 1 km{sup 2}. In total, 600 input and 50 validation measurements were performed using a broadband probe. Five hotspots were discovered and assessed, with maximum total electric-field strengths ranging from 1.3 to 3.1 V/m, satisfying the reference levels issued by the International Commission on Non-Ionizing Radiation Protection for exposure of the general public to RF-EMF. Spectrum analyzer measurements in these hotspots revealed five radiofrequency signals with a relevant contribution to the exposure. The radiofrequency radiation emitted by 900 MHz Global System for Mobile Communications (GSM) base stations was always dominant, with contributions ranging from 45% to 100%. Finally, validation of the subsequent surrogate models shows high prediction accuracy, with the final model featuring an average relative error of less than 2 dB (factor 1.26 in electric-field strength), a correlation coefficient of 0.7, and a specificity of 0.96. -- Highlights: • We present an iterative measurement and modeling method for outdoor RF-EMF exposure. • Hotspots are rapidly identified, and accurately characterized. • An accurate graphical representation, or heat map, is created, using kriging. • Random validation shows good correlation (0.7) and low relative errors (2 dB)

61 RADIATION PROTECTION AND DOSIMETRY↗

Iterative stability analysis of spatial domain decomposition based on block Jacobi algorithm for the diamond-difference scheme

Here, we study convergence of the integral transport matrix method (ITMM) based on a parallel block Jacobi (PBJ) iterative strategy for solving particle transport problems. The ITMM is a spatial domain decomposition method proposed for massively parallel computations. AFourier analysis of the PBJ-based iterations applied to SN diamond-difference equations in 1D slab and 2D Cartesian geometries is performed. It is carried out for infinite-medium problems with homogeneous material properties. To analyze the performance of the ITMM with the PBJ algorithm and evaluate its potential in scalability we consider a limiting case of one spatial cell per subdomain. The analysis shows that in such limit the spectral radius of the iteration method is one without regard to values of the scattering ratio and optical thickness of the spatial cells. This implies lack of convergence in infinite medium. Numerical results of finite-medium problems are presented. They demonstrate effects of finite size of spatial domain on the performance of the iteration algorithm as well as its asymptotic behavior when the extent of the spatial domain increases. Finally, these numerical experiments also show that for finite domains iterative convergence to a finite criterion is achievable in a multiple of the sum of number of cells in each dimension.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

A dissipation-based method for improving the accuracy of computational fluid dynamics simulations of high level non-Newtonian wastes

Here this paper investigates a new viscosity model for laminar, transitional, and turbulent pipe flow simulations of a non-Newtonian slurry using the Star-CCM+ software. Herschel-Bulkley (HB) rheology equation was used in its original and modified forms to model the fluid viscosity. The realizable k-ε model was used for modeling of turbulence. It was observed that simulations using the HB model predicted inaccurate profiles of U (mean velocity) and U + (mean velocity in wall units). Therefore, we developed alternative values of viscosity obtained directly from non-linearity of stress–strain variation (α) in each iteration. The developed method, “Alpha method”, applied changes in places where dissipation rate of turbulent kinetic energy occurred and was designed based on local or global dissipation rate values. Inverse values of α were used to test effects of more viscosity reduction for all flow regimes. In prediction of the mean velocities, significant improvements were obtained through global adjustment of viscosity in inverse form during simulation of the laminar and turbulent flow cases. For the transitional flow, obtaining improvements in prediction of U and U + from the same model version faced challenges. While the global adjustments in direct form were found significantly effective in improving the prediction of U, they failed to predict the U + accurately. For this purpose, Local viscosity adjustments were found significantly effective.

42 ENGINEERING↗

Density cumulant functional theory from a unitary transformation: N-representability, three-particle correlation effects, and application to O{sub 4}{sup +}

A new approach to density cumulant functional theory is developed that derives density cumulant N-representability conditions from an approximate Fock space unitary transformation. We present explicit equations for the third- and fourth-order two-particle cumulant N-representability, as well as the second-order contributions that depend on the connected three-particle density cumulant. These conditions are used to formulate the ODC-13 method and the non-iterative (λ{sub 3}) correction that employ an incomplete description of the fourth-order two-particle cumulant N-representability and the second-order three-particle correlation effects, respectively. We perform an analysis of the ODC-13 N-representability description for the dissociation of H{sub 2} and apply the ODC-13 method and the (λ{sub 3}) correction to diatomic molecules with multiple bond character and the symmetry-breaking tetraoxygen cation (O{sub 4}{sup +}). For the O{sub 4}{sup +} molecule, the vibrational frequencies of the ODC-13(λ{sub 3}) method do not exhibit spatial symmetry breaking and are in a good agreement with the recent infrared photodissociation experiment. We report the O{sub 4}{sup +} equilibrium structure, harmonic frequencies, and dissociation energy computed using ODC-13(λ{sub 3}) with a diffuse, core-correlated aug-cc-pCVTZ basis set.

74 ATOMIC AND MOLECULAR PHYSICS↗

Excitation energies with cost-reduced variant of the active-space EOMCCSDT method: the EOMCCSDt-(3) over-bar approach

In this paper we discuss the performance of the several simplified variants of equation-of-motion coupled cluster method (EOMCC) with iterative inclusion of singles, doubles and active-space triples (EOMCCSDt). In particular, we explore simplified EOMCCSDt approaches which enable one to generate the triply excited amplitudes in on-the-fly manner. The original EOMCCSDt formulation has already demonstrated a great success in encapsulating the most important excited-state correlation effects due to triples. In analogy to the original EOMCCSDT formulation, the proposed approach can by-pass the typical bottlenecks associated with the need for storing triply-excited amplitudes. In this paper, we illustrate the performance of several approximate EOMCCSDt methods, named EOMCCSDt-3 and EOMCCSdt-3x, on typical benchmark systems including C2, N2, and the ozone molecules. These new methods yield excitation energies close to the EOMCCSDt ones. The extrapolation of excitation energies for basis sets ranging from cc-pVDZ to cc-pV6Z for N2 and C2 shows very good convergence to the experimental results for states dominated by single excitations.

Coupled cluster↗

Investigation and quantification of nonlinearity using surrogate data in a glow discharge plasma

Detection of nonlinearity has been carried out in periodic and aperiodic floating potential fluctuations of DC glow discharge plasma by generating surrogate data using iterative amplitude adjusted Fourier transform method. We introduce “delay vector variance” analysis (DVV) for the first time, which allows reliable detection of nonlinearity and provides some easy to interpret diagram conveying information about the nature of the experimental floating potential fluctuations (FPF). The method of false nearest neighbourhood is deployed on the FPF's to find a good embedding so as to be acquainted with the precise knowledge of m, which is desirable for carrying out DVV analysis. The emergence of nonlinearity with increase in discharge voltage has been ensured by taking into consideration the total energy present in different band of frequencies excited due to nonlinear processes. Rejection of null hypothesis has been verified by performing the rank test method that confirms the presence of nonlinearity quantitatively.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

A Scalable Reduced‐Order Model for the Steady Navier–Stokes Equations

Scaling up new scientific technologies from laboratory to industry often involves demonstrating performance on a larger scale. Computer simulations can accelerate design and predictions in the deployment process, though traditional numerical methods are computationally intractable even for intermediate pilot plant scales. Recently, the component reduced order modeling method has been developed to tackle this challenge by combining projection reduced order modeling and discontinuous Galerkin domain decomposition. However, while many scientific or engineering applications involve nonlinear physics, this method has only been demonstrated for various linear systems. In this work, the component reduced order modeling method is extended to steady Navier–Stokes flow, with application to general nonlinear physics in view. The large‐scale, global domain is decomposed into a combination of small‐scale unit component. Linear subspaces for flow velocity and pressure are identified via proper orthogonal decomposition over sample snapshots collected from each small‐scale unit component. Velocity bases are augmented with a pressure supremizer to satisfy the inf–sup condition for stable pressure prediction. Two different nonlinear reduced order modeling methods are employed and compared for efficient evaluation of nonlinear advection: A third‐order tensor projection operator and the empirical quadrature procedure. The proposed method is demonstrated on the flow over arrays of five different unit objects, achieving a 23‐fold speedup with less than 4% relative error in domains up to 256 times larger than the unit components. Furthermore, a numerical experiment with the pressure supremizer strongly indicates the need for a supremizer for stable pressure prediction. A comparison between the tensorial approach and the empirical quadrature procedure revealed a slight advantage of the empirical quadrature procedure. The framework is compared with an alternating Schwarz‐based reduced‐order approach, demonstrating improved efficiency and robustness for the DG‐based global solver while retaining flexibility for sub‐scale iterative solvers. The method is further extended to a coupled advection–diffusion and Navier–Stokes system, illustrating its applicability to multi‐physics problems and its potential for more general, inter‐coupled nonlinear systems.

42 ENGINEERING↗