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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 955 records · Page 53
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Dimer interaction in the Hv1 proton channel

The voltage-gated proton channel Hv1 is a member of the voltage-gated ion channel superfamily, which stands out in design: It is a dimer of two voltage-sensing domains (VSDs), each containing a pore pathway, a voltage sensor (S4), and a gate (S1) and forming its own ion channel. Opening of the two channels in the dimer is cooperative. Part of the cooperativity is due to association between coiled-coil domains that extend intracellularly from the S4s. Interactions between the transmembrane portions of the subunits may also contribute, but the nature of transmembrane packing is unclear. Using functional analysis of a mutagenesis scan, biochemistry, and modeling, we find that the subunits form a dimer interface along the entire length of S1, and also have intersubunit contacts between S1 and S4. These interactions exert a strong effect on gating, in particular on the stability of the open state. Our results suggest that gating in Hv1 is tuned by extensive VSD–VSD interactions between the gates and voltage sensors of the dimeric channel.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Regulating phase behavior of nanoparticle assemblies through engineering of DNA-mediated isotropic interactions

Self-assembly of isotropically interacting particles into desired crystal structures could allow for creating designed functional materials via simple synthetic means. However, the ability to use isotropic particles to assemble different crystal types remains challenging, especially for generating low-coordinated crystal structures. Here, we demonstrate that isotropic pairwise interparticle interactions can be rationally tuned through the design of DNA shells in a range that allows transition from common, high-coordinated FCC-CuAu and BCC-CsCl lattices, to more exotic symmetries for spherical particles such as the SC-NaCl lattice and to low-coordinated crystal structures (i.e., cubic diamond, open honeycomb). The combination of computational and experimental approaches reveals such a design strategy using DNA-functionalized nanoparticles and successfully demonstrates the realization of BCC-CsCl, SC-NaCl, and a weakly ordered cubic diamond phase. The study reveals the phase behavior of isotropic nanoparticles for DNA–shell tunable interaction, which, due to the ease of synthesis is promising for the practical realization of non-close-packed lattices.

77 NANOSCIENCE AND NANOTECHNOLOGY↗
DOE OSTI2023

Structures and membrane interactions of native serotonin transporter in complexes with psychostimulants

The serotonin transporter (SERT) is a member of the SLC6 neurotransmitter transporter family that mediates serotonin reuptake at presynaptic nerve terminals. SERT is the target of both therapeutic antidepressant drugs and psychostimulant substances such as cocaine and methamphetamines, which are small molecules that perturb normal serotonergic transmission by interfering with serotonin transport. Despite decades of studies, important functional aspects of SERT such as the oligomerization state of native SERT and its interactions with potential proteins remain unresolved. Here, we develop methods to isolate SERT from porcine brain (pSERT) using a mild, nonionic detergent, utilize fluorescence-detection size-exclusion chromatography to investigate its oligomerization state and interactions with other proteins, and employ single-particle cryo-electron microscopy to elucidate the structures of pSERT in complexes with methamphetamine or cocaine, providing structural insights into psychostimulant recognition and accompanying pSERT conformations. Methamphetamine and cocaine both bind to the central site, stabilizing the transporter in an outward open conformation. We also identify densities attributable to multiple cholesterol or cholesteryl hemisuccinate (CHS) molecules, as well as to a detergent molecule bound to the pSERT allosteric site. Under our conditions of isolation, we find that pSERT is best described as a monomeric entity, isolated without interacting proteins, and is ensconced by multiple cholesterol or CHS molecules.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

First principles band structure of interacting phosphorus and boron/aluminum δ -doped layers in silicon

Silicon can be heavily doped with phosphorus in a single atomic layer (a δ layer), significantly altering the electronic structure of the conduction bands within the material. Recent progress has also made it possible to further dope silicon with acceptor-based δ layers using either boron or aluminum, making it feasible to create devices with interacting δ layers with opposite polarity. Using density functional theory, we calculate the electronic structure of a phosphorus-based δ layer interacting with a boron or aluminum δ layer, varying the distances between the δ layers. At separations 1 nm and smaller, the dopant potentials overlap and largely cancel each other out, leading to an electronic structure closely mimicking intrinsic silicon. At separations greater than 1 nm, the two δ layers behave independently of one another, with an equivalent electronic structure to a p–n diode with an intrinsic layer taking the place of the depletion region. One mechanism for charge transfer between δ layers at larger distances could be tunneling, where we see a tunneling probability exceeding what would be seen for a standard silicon 1.1 eV triangular barrier, indicating that the interaction between delta layers may enhance tunneling compared to a traditional junction.

delta layers↗
DOE OSTI2020

Identification of a network of nonlinear interactions as a mechanism triggering the onset of edge localized modes

Edge localized modes (ELMs) remain a critical issue for the lifetime of in-vessel components of fusion reactors such as ITER. We study ELMs triggered when the pedestal parameters are below the peeling-ballooning limit. These ELMs occur while the pedestal recovers after an ELM crash. We identify a mechanism by which a non-linear perturbation involving many active triads—a network of non-linear interactions – leads to the triggering of these ELMs. Each active triad leads to the non-linear transfer of energy between three waves, such that the network of non-linear interactions lead to a transfer of energy between many waves. The triggering of this non-linear perturbation systematically coincides with a pedestal perturbation induced by the neutral beam injection beams and localized near the magnetic surface of safety factor q = 5. Among the non-linear interactions detected during the ELM by a bi-coherence analysis, the most active triad involves a slow frequency that is qualitatively consistent with a geodesic acoustic mode located at the same location, i.e., near the q = 5 surface.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2022

Cosmological dependence of sterile neutrino dark matter with self-interacting neutrinos

Unexplored interactions of neutrinos could be the key to understanding the nature of the dark matter (DM). In particular, active neutrinos with new self-interactions can produce keV-mass sterile neutrinos that account for the whole of the DM through the Dodelson-Widrow mechanism for a large range of active-sterile mixing values. This production typically occurs before Big-Bang Nucleosynthesis (BBN) in a yet uncharted era of the Universe. We assess how the mixing range for keV-mass sterile neutrino DM is affected by the uncertainty in the early Universe pre-BBN cosmology. This is particularly relevant for identifying the viable parameter space of sterile neutrino searches allowed by all astrophysical limits, as well as for cosmology, since the detection of a sterile neutrino could constitute the first observation of a particle providing information about the pre-BBN epoch. Here, we find that the combined uncertainties in the early Universe cosmology and neutrino interactions significantly expand the allowed parameter space for sterile neutrinos that can constitute the whole of the DM.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

i-SPin: an integrator for multicomponent Schrödinger-Poisson systems with self-interactions

Abstract We provide an algorithm and a publicly available code to numerically evolve multicomponent Schrödinger-Poisson (SP) systems with a SO( n ) symmetry, including attractive or repulsive self-interactions in addition to gravity. Focusing on the case where the SP system represents the non-relativistic limit of a massive vector field, non-gravitational self-interactions (in particular spin-spin interactions) introduce complexities related to mass and spin conservation which are not present in purely gravitational systems. We address them with an analytical solution for the `kick' step in the algorithm, where we are able to decouple the multicomponent system completely. Equipped with this analytical solution, the full field evolution is second order accurate, preserves spin and mass to machine precision, and is reversible. Our algorithm allows for an expanding universe relevant for cosmology, and the inclusion of external potentials relevant for laboratory settings.

Astronomy & Astrophysics↗
DOE OSTI2024

Self-consistent interaction of linear gravitational and electromagnetic waves in non-magnetized plasma

Here, this paper explores the hybridization of linear metric perturbations with linear electromagnetic (EM) perturbations in non-magnetized plasma for a general background metric. The local wave properties are derived from first principles for inhomogeneous plasma, without assuming any symmetries of the background metric. First, we derive the effective (“oscillation-center”) Hamiltonian that governs the average dynamics of plasma particles in a prescribed quasimonochromatic wave that involves metric perturbations and EM fields simultaneously. Then, using this Hamiltonian, we derive the backreaction of plasma particles on the wave itself and obtain gauge-invariant equations that describe the resulting self-consistent gravito-electromagnetic (GEM) waves in a plasma. The transverse tensor modes of gravitational waves are found to have no interaction with the plasma and the EM modes in the geometrical-optics limit. However, for $longitudinal$ GEM modes with large values of the refraction index, the interplay between gravitational and EM interactions in plasma can have a strong effect. In particular, the dispersion relation of the Jeans mode is significantly affected by electrostatic interactions. As a spin-off, our calculation also provides an alternative resolution of the so-called Jeans swindle.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2026

Widen the resonance at ultra-high energies: novel probes of neutrino self-interactions in the high-mass regime

Neutrino self-interactions beyond the Standard Model are well motivated by the nonzero masses of neutrinos, which are the only known particles guaranteed to have new physics. Meanwhile, cosmic messengers, especially neutrinos, play a central role in probing new physics, as they provide experimental conditions far beyond the reach of laboratories and serve as the link between laboratory fundamental-physics discoveries and their roles in the Universe, where many new physics motivations originate.In this work, we propose a novel probe of neutrino self-interactions through ultrahigh-energy neutrinos scattering off the cosmic neutrino background when the lightest neutrino species remains relativistic today.This allows us to “Widen the Resonance” of such scattering [1].In addition, we also provide a semi-analytic framework for cosmogenic ultrahigh-energy neutrino production, avoiding computationally intensive simulations and yielding results precise enough for beyond-the-standard-model studies.The widened resonance enables future ultrahigh-energy neutrino telescopes,in particular GRAND, to probe mediator masses from MeV to GeV, reaching couplings down to g ∼ 10$^{-3}$ — up to two orders of magnitude beyond current bounds.Our results enhance the discovery potential of neutrino self-interactions in the high-mass regime, potentially offering crucial insights into the connections between the neutrino sector and dark sector.

Machado, Pedro A.N. [Fermilab] (ORCID:000000029118↗
DOE OSTI2025

Quantum simulation of Lindbladian dynamics via repeated interactions

The Lindblad equation generalizes the Schrödinger equation to quantum systems that undergo dissipative dynamics. The quantum simulation of Lindbladian dynamics is therefore non-unitary, preventing a naive application of state-of-the-art quantum algorithms. Here, we make use of an approximate correspondence between Lindbladian dynamics and evolution based on repeated interaction (RI) CPTP maps to write down a Hamiltonian formulation of the Lindblad dynamics and derive a rigorous error bound on the master equation. Specifically, we show that the number of interactions needed to simulate the Liouvillian within error e scales in most physical scenarios as . This is significant because the error in the Lindbladian approximation to the dynamics is not explicitly bounded in existing quantum algorithms for open system simulations. We then provide quantum algorithms to simulate RI maps using an iterative qubitization approach and Trotter–Suzuki formulas, and specifically show that for iterative qubitization the number of operations needed to simulate the dynamics (for a fixed value of ?) scales as in the limit where a0 (the coefficient 1-norm for the system and bath Hamiltonians) asymptotically dominates over the corresponding factor for the interaction Hamiltonian, which is often the case in weak coupling. This scaling would appear to be optimal if the complexity of ? is not considered, which underscores the importance of considering the error in the Liouvillian that we reveal in this work.

Quantum Computing↗
DOE OSTI2025

Mid-latitude clouds contribute to Arctic amplification via interactions with other climate feedbacks

Abstract Traditional feedback analyses, which assume that individual climate feedback mechanisms act independently and add linearly, suggest that clouds do not contribute to Arctic amplification. However, feedback locking experiments, in which the cloud feedback is disabled, suggest that clouds, particularly outside of the Arctic, do contribute to Arctic amplification. Here, we reconcile these two perspectives by introducing a framework that quantifies the interactions between radiative feedbacks, radiative forcing, ocean heat uptake, and atmospheric heat transport. We show that including the cloud feedback in a comprehensive climate model can result in Arctic amplification because of interactions with other radiative feedbacks. The surface temperature change associated with including the cloud feedback is amplified in the Arctic by the surface-albedo, Planck, and lapse-rate feedbacks. A moist energy balance model with a locked cloud feedback exhibits similar behavior as the comprehensive climate model with a disabled cloud feedback and further indicates that the mid-latitude cloud feedback contributes to Arctic amplification via feedback interactions. Feedback locking in the moist energy balance model also suggests that the mid-latitude cloud feedback contributes substantially to the intermodel spread in Arctic amplification across comprehensive climate models. These results imply that constraining the mid-latitude cloud feedback will greatly reduce the intermodel spread in Arctic amplification. Furthermore, these results highlight a previously unrecognized non-local pathway for Arctic amplification.

58 GEOSCIENCES↗
DOE OSTI2021

Theoretical evidence that root penetration ability interacts with soil compaction regimes to affect nitrate capture

Abstract Background and Aims Although root penetration of strong soils has been intensively studied at the scale of individual root axes, interactions between soil physical properties and soil foraging by whole plants are less clear. Here we investigate how variation in the penetration ability of distinct root classes and bulk density profiles common to real-world soils interact to affect soil foraging strategies. Methods We utilize the functional–structural plant model ‘OpenSimRoot’ to simulate the growth of maize (Zea mays) root systems with variable penetration ability of axial and lateral roots in soils with (1) uniform bulk density, (2) plow pans and (3) increasing bulk density with depth. We also modify the availability and leaching of nitrate to uncover reciprocal interactions between these factors and the capture of mobile resources. Key Results Soils with plow pans and bulk density gradients affected overall size, distribution and carbon costs of the root system. Soils with high bulk density at depth impeded rooting depth and reduced leaching of nitrate, thereby improving the coincidence of nitrogen and root length. While increasing penetration ability of either axial or lateral root classes produced root systems of comparable net length, improved penetration of axial roots increased allocation of root length in deeper soil, thereby amplifying N acquisition and shoot biomass. Although enhanced penetration ability of both root classes was associated with greater root system carbon costs, the benefit to plant fitness from improved soil exploration and resource capture offset these. Conclusions While lateral roots comprise the bulk of root length, axial roots function as a scaffold determining the distribution of these laterals. In soils with high soil strength and leaching, root systems with enhanced penetration ability of axial roots have greater distribution of root length at depth, thereby improving capture of mobile resources.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Identification of genetic interactions with priB links the PriA/PriB DNA replication restart pathway to double-strand DNA break repair in Escherichia coli

Collisions between DNA replication complexes (replisomes) and impediments such as damaged DNA or proteins tightly bound to the chromosome lead to premature dissociation of replisomes at least once per cell cycle in Escherichia coli. Left unrepaired, these events produce incompletely replicated chromosomes that cannot be properly partitioned into daughter cells. DNA replication restart, the process that reloads replisomes at prematurely terminated sites, is therefore essential in E. coli and other bacteria. Three replication restart pathways have been identified in E. coli: PriA/PriB, PriA/PriC, and PriC/Rep. A limited number of genetic interactions between replication restart and other genome maintenance pathways have been defined, but a systematic study placing replication restart reactions in a broader cellular context has not been performed. We have utilized transposon-insertion sequencing to identify new genetic interactions between DNA replication restart pathways and other cellular systems. Known genetic interactors with the priB replication restart gene (uniquely involved in the PriA/PriB pathway) were confirmed and several novel priB interactions were discovered. Targeted genetic and imaging-based experiments with priB and its genetic partners revealed significant double-strand DNA break accumulation in strains with mutations in dam, rep, rdgC, lexA, or polA. Modulating the activity of the RecA recombinase partially suppressed the detrimental effects of rdgC or lexA mutations in ΔpriB cells. Taken together, our results highlight roles for several genes in double-strand DNA break homeostasis and define a genetic network that facilitates DNA repair/processing upstream of PriA/PriB-mediated DNA replication restart in E. coli.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Examining the self-interaction of dark matter through central cluster galaxy offsets

ABSTRACT While collisionless cold dark matter models have been largely successful in explaining a wide range of observational data, some tensions still exist, and it remains possible that dark matter possesses a non-negligible level of self-interactions. In this paper, we investigate a possible observable consequence of self-interacting dark matter: offsets between the central galaxy and the centre of mass of its parent halo. We examine 23 relaxed galaxy clusters in a redshift range of 0.1–0.3 drawn from clusters in the Dark Energy Survey and the Sloan Digital Sky Survey which have archival Chandra X-ray data of sufficient depth for centre and relaxation determination. We find that most clusters in our sample show non-zero offsets between the X-ray centre, taken to be the centroid within the cluster core, and the central galaxy position. All of the measured offsets are larger, typically by an order of magnitude, than the uncertainty in the X-ray position due to Poisson noise. In all but six clusters, the measured offsets are also larger than the estimated, combined astrometric uncertainties in the X-ray and optical positions. A more conservative cut on concentration to select relaxed clusters marginally reduces but does not eliminate the observed offset. With our more conservative sample, we find an estimated median X-ray to central galaxy offset of $\mu = 6.0 ^{+ 1.4}_{- 1.5}$ kpc. Comparing to recent simulations, this distribution of offsets is consistent with some level of dark matter self-interaction, though further simulation work is needed to place constraints.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Exploring the interaction between the MW and LMC with a large sample of blue horizontal branch stars from the DESI survey

The Large Magellanic Cloud (LMC) is a Milky Way (MW) satellite that is massive enough to gravitationally attract the MW disc and inner halo, causing significant motion of the inner MW with respect to the outer halo. In this work, we probe this interaction by constructing a sample of 9866 blue horizontal branch (BHB) stars with radial velocities from the DESI spectroscopic survey out to 120 kpc from the Galactic centre. This is the largest spectroscopic set of BHB stars in the literature to date, and it contains four times more stars with Galactocentric distances beyond 50 kpc than previous BHB catalogues. Using the DESI BHB sample combined with SDSS BHBs, we measure the bulk radial velocity of stars in the outer halo and observe that the velocity in the Southern Galactic hemisphere is different by 3.7σ from the North. Modelling the projected velocity field shows that its dipole component is directed at a point 22 deg away from the LMC along its orbit, which we interpret as the travel direction of the inner MW. The velocity field includes a monopole term that is –24 km s –1 ⁠, which we refer to as compression velocity. This velocity is significantly larger than predicted by the current models of the MW and LMC interaction. This work uses DESI data from its first 2 yr of observations, but we expect that with upcoming DESI data releases, the sample of BHB stars will increase and our ability to measure the MW–LMC interaction will improve significantly.

Galaxy: evolution↗
DOE OSTI2023

Galaxy Cruise: Deep Insights into Interacting Galaxies in the Local Universe

Abstract We present the first results from GALAXY CRUISE, a community (or citizen) science project based on data from the Hyper Suprime-Cam Subaru Strategic Program (HSC-SSP). The current paradigm of galaxy evolution suggests that galaxies grow hierarchically via mergers, but our observational understanding of the role of mergers is still limited. The data from HSC-SSP are ideally suited to improve our understanding with improved identifications of interacting galaxies thanks to the superb depth and image quality of HSC-SSP. We launched a community science project, GALAXY CRUISE, in 2019 and have collected over two million independent classifications of 20686 galaxies at z < 0.2. We first characterize the accuracy of the participants’ classifications and demonstrate that it surpasses previous studies based on shallower imaging data. We then investigate various aspects of interacting galaxies in detail. We show that there is a clear sign of enhanced activities of super-massive black holes and star formation in interacting galaxies compared to those in isolated galaxies. The enhancement seems particularly strong for galaxies undergoing violent mergers. We also show that the mass growth rate inferred from our results is roughly consistent with the observed evolution of the stellar mass function. The second season of GALAXY CRUISE is currently underway and we conclude with future prospects. We make the morphological classification catalog used in this paper publicly available at the GALAXY CRUISE website, which will be particularly useful for machine-learning applications.

Tanaka, Masayuki↗
DOE OSTI2021

Plant SWEETs: from sugar transport to plant–pathogen interaction and more unexpected physiological roles

Abstract Sugars Will Eventually be Exported Transporters (SWEETs) have important roles in numerous physiological mechanisms where sugar efflux is critical, including phloem loading, nectar secretion, seed nutrient filling, among other less expected functions. They mediate low affinity and high capacity transport, and in angiosperms this family is composed by 20 paralogs on average. As SWEETs facilitate the efflux of sugars, they are highly susceptible to hijacking by pathogens, making them central players in plant–pathogen interaction. For instance, several species from the Xanthomonas genus are able to upregulate the transcription of SWEET transporters in rice (Oryza sativa), upon the secretion of transcription-activator-like effectors. Other pathogens, such as Botrytis cinerea or Erysiphe necator, are also capable of increasing SWEET expression. However, the opposite behavior has been observed in some cases, as overexpression of the tonoplast AtSWEET2 during Pythium irregulare infection restricted sugar availability to the pathogen, rendering plants more resistant. Therefore, a clear-cut role for SWEET transporters during plant–pathogen interactions has so far been difficult to define, as the metabolic signatures and their regulatory nodes, which decide the susceptibility or resistance responses, remain poorly understood. This fuels the still ongoing scientific question: what roles can SWEETs play during plant–pathogen interaction? Likewise, the roles of SWEET transporters in response to abiotic stresses are little understood. Here, in addition to their relevance in biotic stress, we also provide a small glimpse of SWEETs importance during plant abiotic stress, and briefly debate their importance in the particular case of grapevine (Vitis vinifera) due to its socioeconomic impact.

Breia, Richard↗
DOE OSTI2020

Molecular mechanism for the interaction between human CPSF30 and hFip1

Most eukaryotic pre-mRNAs must undergo 3'-end cleavage and polyadenylation prior to their export from the nucleus. A large number of proteins in several complexes participate in this 3'-end processing, including cleavage and polyadenylation specificity factor (CPSF) in mammals. The CPSF30 subunit contains five CCCH zinc fingers (ZFs), with ZF2–ZF3 being required for the recognition of the AAUAAA poly(A) signal. ZF4–ZF5 recruits the hFip1 subunit of CPSF, although the details of this interaction have not been characterized. Here we report the crystal structure of human CPSF30 ZF4–ZF5 in complex with residues 161–200 of hFip1 at 1.9 Å resolution, illuminating the molecular basis for their interaction. Unexpectedly, the structure reveals one hFip1 molecule binding to each ZF4 and ZF5, with a conserved mode of interaction. Our mutagenesis studies confirm that the CPSF30–hFip1 complex has 1:2 stoichiometry in vitro. Mutation of each binding site in CPSF30 still allows one copy of hFip1 to bind, while mutation of both sites abrogates binding. Our fluorescence polarization binding assays show that ZF4 has higher affinity for hFip1, with a K d of 1.8 nM. We also demonstrate that two copies of the catalytic module of poly(A) polymerase (PAP) are recruited by the CPSF30–hFip1 complex in vitro, and both hFip1 binding sites in CPSF30 can support polyadenylation.

59 BASIC BIOLOGICAL SCIENCES↗