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At least 955 records · Page 53

Heterophilic and homophilic cadherin interactions in intestinal intermicrovillar links are species dependent

Enterocytes are specialized epithelial cells lining the luminal surface of the small intestine that build densely packed arrays of microvilli known as brush borders. These microvilli drive nutrient absorption and are arranged in a hexagonal pattern maintained by intermicrovillar links formed by 2 nonclassical members of the cadherin superfamily of calcium-dependent cell adhesion proteins: protocadherin-24 (PCDH24, also known as CDHR2) and the mucin-like protocadherin (CDHR5). The extracellular domains of these proteins are involved in heterophilic and homophilic interactions important for intermicrovillar function, yet the structural determinants of these interactions remain unresolved. Here, we present X-ray crystal structures of the PCDH24 and CDHR5 extracellular tips and analyze their species-specific features relevant for adhesive interactions. In parallel, we use binding assays to identify the PCDH24 and CDHR5 domains involved in both heterophilic and homophilic adhesion for human and mouse proteins. Our results suggest that homophilic and heterophilic interactions involving PCDH24 and CDHR5 are species dependent with unique and distinct minimal adhesive units.

59 BASIC BIOLOGICAL SCIENCES↗

Targeting tRNA-synthetase interactions towards novel therapeutic discovery against eukaryotic pathogens

The development of chemotherapies against eukaryotic pathogens is especially challenging because of both the evolutionary conservation of drug targets between host and parasite, and the evolution of strain-dependent drug resistance. There is a strong need for new nontoxic drugs with broad-spectrum activity against trypanosome parasites such as Leishmania and Trypanosoma. A relatively untested approach is to target macromolecular interactions in parasites rather than small molecular interactions, under the hypothesis that the features specifying macromolecular interactions diverge more rapidly through coevolution. We computed tRNA Class-Informative Features in humans and independently in eight distinct clades of trypanosomes, identifying parasite-specific informative features, including base pairs and base mis-pairs, that are broadly conserved over approximately 250 million years of trypanosome evolution. Validating these observations, we demonstrated biochemically that tRNA:aminoacyl-tRNA synthetase (aaRS) interactions are a promising target for anti-trypanosomal drug discovery. From a marine natural products extract library, we identified several fractions with inhibitory activity toward Leishmania major alanyl-tRNA synthetase (AlaRS) but no activity against the human homolog. These marine natural products extracts showed cross-reactivity towards Trypanosoma cruzi AlaRS indicating the broad-spectrum potential of our network predictions. We also identified Leishmania major threonyl-tRNA synthetase (ThrRS) inhibitors from the same library. We discuss why chemotherapies targeting multiple aaRSs should be less prone to the evolution of resistance than monotherapeutic or synergistic combination chemotherapies targeting only one aaRS.

59 BASIC BIOLOGICAL SCIENCES↗

Constraints On Covariant WIMP-Nucleon Effective Field Theory Interactions from the First Science Run of the LUX-ZEPLIN Experiment

The first science run of the LUX-ZEPLIN (LZ) experiment, a dual-phase xenon time project chamber operating in the Sanford Underground Research Facility in South Dakota, USA, has reported leading limits on spin-independent WIMP-nucleon interactions and interactions described from a non-relativistic effective field theory (NREFT). Using the same 5.5~t fiducial mass and 60 live days of exposure we report on the results of a relativistic extension to the NREFT. We present constraints on couplings from covariant interactions arising from the coupling of vector, axial currents, and electric dipole moments of the nucleon to the magnetic and electric dipole moments of the WIMP which cannot be described by recasting previous results described by an NREFT. Using a profile-likelihood ratio analysis, in an energy region between 0~keV_{nr} to 270~keV_{nr}, we report 90% confidence level exclusion limits on the coupling strength of five interactions in both the isoscalar and isovector bases. .

Source record↗

Impact of Coherent Beam-Beam Interaction on the Collisionless Damping of the Transverse Coupled-Bunch Instability

In the EIC design, at high average-current operation, the transverse coupled-bunch instability (TCBI) induced by the long-range transverse resistive-wall wakefield in the electron storage ring (eSR) has a fast growth rate and requires efficient mitigation. A natural mitigation mechanism is provided by the beam-beam interaction at the interaction point (IP), which gives a strong Landau damping for the TCBI in the eSR. In this study, using a simplified simulation model, we investigate how this Landau damping from the beam-beam interaction behaves when the coherent beam-beam interaction at IP is considered. Our method and results will be presented in this paper.

Li, R.↗

Progress in the design of the future circular collider FCC-ee interaction region

In this paper we discuss the latest developments for the FCC-ee interaction region layout, which represents one of the key ingredients to establish the feasibility of the FCC-ee. The collider has to achieve extremely high luminosities over a wide range of center-of-mass energies with two or four interaction points. The complex final focus hosted in the detector region has to be carefully designed, and the impact of beam losses and of any type of synchrotron radiation generated in the interaction region, including beamstrahlung, have to be evaluated in detail with simulations. We give an overview of the progress of the whole machine-detector-interface-related studies, among which are the updated mechanical model of the interaction region, the plans for a novel R&D activity of a IR mockup which is just starting, the collimation scheme and evaluation of beam induced backgrounds in the detectors, evaluation of radiation dose in the experimental area, and MDI integration with the detector.

43 PARTICLE ACCELERATORS↗

ICAT: The Interactive Corpus Analysis Tool

The Interactive Corpus Analysis Tool (ICAT) is a Python library for creating dashboards to explore textual datasets and build simple binary classification models to help filter through them and focus on entries of interest. This tool uses a form of interactive machine learning (IML), a paradigm of “machine teaching” (Simard et al., 2017) that sits at the intersection of the fields of human computer interaction (HCI), visual analytics, and machine learning. The intent of ICAT is to allow subject matter experts (SME) with limited to no experience in machine learning to benefit from an iterative human-in-the-loop (HITL) approach to building their own model without needing to understand the details of the underlying algorithm. This interactivity is achieved by allowing the user to create features, label data points, and visually manipulate a representation of the features to manually cluster and investigate data, while a model is trained on the fly based on these actions. ICAT is built on top of the Panel (Holoviz, 2018) library, using a combination of Vega, a custom IPyWidget using D3, and ipyvuetify, and is intended to be used inside of a Jupyter environment.

Martindale, Nathan [Oak Ridge National Laboratory ↗

Exploring the unknown Lambda-neutron interaction

No published \Lambda Λ n scattering data exist. A relativistic heavy-ion experiment has suggested that a \Lambda Λ nn bound state was seen. However, several theoretical analyses have cast serious doubt on the bound-state assertion. Nevertheless, there could exist a three-body \Lambda Λ nn resonance. Such a resonance could be used to constrain the \Lambda Λ n interaction. We discuss \Lambda Λ nn calculations using nn and \Lambda Λ n pairwise interactions of rank-one, separable form that fit effective range parameters of the nn system and those hypothesized for the as yet unobserved \Lambda Λ n system based upon four different \Lambda Λ N potentials. The use of rank-one separable potentials allows one to analytically continue the \Lambda Λ nn Faddeev equations onto the second complex energy plane in search of resonance poles, by examining the eigenvalue spectrum of the kernel of the Faddeev equations. Although each of the potential models predicts a \Lambda Λ nn sub-threshold resonance pole, scaling of the \Lambda Λ n interaction by as little as \sim ∼ 5% does produce a physical resonance. This suggests that one may use photo-(electro-)production of the \Lambda Λ nn system from tritium as a tool to examine the strength of the \Lambda Λ n interaction.

Gibson, Benjamin↗

Evaporation Sub-model Development for Volume of Fluid (eVOF) Method Applicable to Spray-Wall Interaction Including Film Characteristics with Validation at High Pressure and Temperature Conditions (Final Report)

Internal combustion engines have seen a great evolution over the last several decades through application of high pressure direct injection, multiple injections, and other technologies to reduced fuel consumption, NOx, and PM. Although combustion systems with advanced injection strategies have been studied extensively, there exists a significant fundamental knowledge gap on the fuel-spray interactions with the piston surface and chamber walls. Advanced computational codes validated with experimental techniques have to be developed for accurate representation of the drop impingement, fuel film formation, and vaporization. Current engine CFD spray models utilize a Lagrangian framework for modeling which lacks critical considerations of the physics pertaining to these interactions and thus requiring extensive parameterization, tuning and validation. The team from Michigan Technological University, University of Massachusetts Dartmouth, and Argonne National Laboratory is composed of experts in sprays, combustion, engines and CFD with a wide spectrum of knowledge including specific expertise in the area under consideration. In the proposed work, a VOF modeling approach has been adopted for the spray-wall interaction, film formation and spreading, and vaporization. With the inclusion of a vaporization submodel, a more predictive and accurate simulation of the spray-film was performed without extensive need of parameterization and tuning. Extensive experimentation of the spray-wall interaction under the range of conditions matching the thermodynamic and surface temperatures that occur in diesel and gasoline engines were conducted to validate the SWI submodels and for development of the evaporation sub-model, which has been implemented in the Converge software.

42 ENGINEERING↗

Elucidating algal-bacterial community interactions by tracking volatile biomarkers (Final Report)

This feasibility study project aimed to lay further groundwork for studying and understanding how microorganisms interact with each other at the molecular level using model algal-bacterial co-cultures. A better understanding of such interactions is critical to optimizing and operating biotic platforms for a number of applications, including bioenergy, algal bioproducts and agriculture, and carbon capture. Here we explored the feasibility of characterizing and following these interactions by identifying and tracking volatile metabolites and biomarkers in the complex gaseous headspace of such cultures. We set up an experimental platform using a co-culture of Phaeodactylum tricornutum and Marinobacter subspecies 3-2 as a model system, used solid-phase microextraction fibers for volatile collection at various time points throughout culture growth, and employed gas chromatography mass spectrometry-based instrumentation available at LLNL for compound identification and quantification. We found that it is feasible to determine volatile profiles from the growth of Phaeodactylum tricornutum and Marinobacter subspecies 3-2 using our methodology and monitor profile changes over time. We also observed that volatiles distinguishing between cultures of the individual species and the co-cultures could be detected. We expect that results of this project will feed into the ongoing LLNL’s DOE BER funded Biofuels Scientific Focus Area (SFA) on algal-bacterial interactions and pave the way for future expanded volatile studies supported by DOE. The approach and technologies developed here would also be applicable and transferable to other microbial communities under study, such as cyanobacteria, rhizosphere communities and biofilms.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Evaluating the Interactions Between Variable Renewable Energy and Diurnal Storage

Cost declines and growing deployment of photovoltaic (PV), wind, and storage have led to increasing interest in the potential interactions of these three technologies as their role in the power system grows. In this work we enhance a national-scale capacity expansion model to evaluate how PV, wind, and storage interact in the evolution of the power system. Importantly, the modeling framework captures interactions in both investments and operations. Through this work we identify significant synergies between PV and storage. Scenarios with more PV always have more storage, and scenarios with more storage always have more PV. This synergy is due to the diurnal alignment of PV generation with 4-8 hour storage, and to the ability of PV to narrow system peaks to allow shorter-duration storage to serve as a peaking resource. Interactions between wind and storage are less pronounced, though we do observe that longer-duration storage resources appear to provide greater value for wind.

14 SOLAR ENERGY↗

TRACER-Coastal Urban Boundary-Layer Interactions with Convection (TRACER-CUBIC) Field Campaign Report

To better understand the complicated web of processes governing convective cloud life cycle and aerosol-convection interactions, the U.S. Department of Energy (DOE)’s Atmospheric Radiation Measurement (ARM) user facility supported deployment of a variety of advanced atmospheric measurement systems to the greater Houston, Texas, area from 1 October 2021 to 30 September 2022 as part of the Tracking Aerosol Convection Interactions Experiment (TRACER). Houston was selected as a study area because isolated convection and a variety of aerosol conditions are common in this region. This one-year ARM Mobile Facility (AMF) deployment featured a four-month intensive operational period (IOP) during summer 2022 (1 June–30 September). The ARM instrumentation was deployed at three sites along an east-west transect from La Porte, Texas to an ancillary site in a less-polluted rural region southwest of downtown Houston (Figure 1). At the La Porte Site, which is located near the Houston ship channel in an area that experiences significant pollution, the first ARM Mobile Facility (AMF1) was deployed. During the IOP, the ARM tethered balloon system (TBS) operated at the ancillary site. The second-generation C-Band Scanning ARM Precipitation Radar (CSAPR) operated near Pearland, Texas, roughly halfway between the Laporte and ancillary sites. As part of the TRACER- Coastal Urban Boundary-Layer Interactions with Convection (CUBIC) project, three boundary-layer profiling systems) were deployed along a north-south transect spanning from the University of Houston Coastal Center to the Aldine site north of downtown Houston (also blue dot in Figure 1) during the TRACER IOP. These systems included the National Oceanic and Atmospheric Administration (NOAA) National Severe Storms Laboratory CLAMPS2 (C2), which was deployed at the UHCC, the University of Wisconsin SPARC, which was deployed at the ARM CSAPR site near Pearland (orange diamond in middle of map in Figure 1), and the University of Oklahoma CLAMPS1 (C1), which was deployed at Aldine. These three systems have been successfully operated in various field campaigns, providing data sets that collectively offer new insights into atmospheric-boundary-layer (ABL) processes, sea-breeze (SB) circulations, and convection initiation (CI). For the TRACER IOP window, these systems ran continuously between 1 June and 26 September, 2022. Due to commitments to NOAA projects, the Doppler lidar at the UHCC site was not available until 24 June 2022. The CLAMPS and SPARC profiling systems are self-contained platforms that have benefited from several years of development and deployment. Instruments and data processing were maintained remotely, which made the 4-month deployment for the TRACER-CUBIC IOP period possible. The same basic instrument configuration comprises each system: a scanning Doppler wind lidar for flow characterization and passive profiler(s) for characterizing planetary-boundary-layer (PBL) thermodynamic properties. Each platform includes a Halo Streamline Doppler wind lidar, an Atmospheric Emitted Radiance Interferometer (AERI), and a surface meteorology station. CLAMPS1 and CLAMPS2 each also include a microwave radiometer (MWR, Figure 1d). The TRACER-CUBIC hypotheses included (i) Interactions of SB and urban circulations and how they affect the PBL structure in the Houston environment, causing spatially (horizontally and vertically) and temporally highly variable flow patterns, (ii) heat, moisture, and aerosol transport and mixing depend on these flow dynamics, and (iii) an improved understanding of the flow patterns and PBL structure are critical for investigating the processes leading to CI. To test these hypotheses, the project aimed at (i) characterizing SB circulations and their impacts on the diurnal evolution of the structure of the ABL, (ii) studying the evolution of Houston’s complex urban boundary layer, and (iii) identifying effects of urban-induced circulations on pre-convective environments. TRACER-CUBIC observations generally provide good coverage during the summer IOP. Initial screening of the data indicates a good number of cases with bay-breeze (BB) and/or SB signatures, local CI, and interesting boundary-layer features such as strong nocturnal low-level jets (LLJs, Table 1). The numbers listed in rows 3-5 in this table will be further updated as part of ongoing in-depth analyses and systematic identification of local circulations and CI events. More detailed information about the data availability and quality for each instrument is provided in the “readme” files that were submitted to the ARM Data Center along with each archived data sets. These “readme” files also provide instrument descriptions, information about the data collection and processing procedures, data formats, and any additional information relevant for further data analysis.

54 ENVIRONMENTAL SCIENCES↗

Rare Neutrino Interaction and $\pi^0$ Production Cross Sections with MicroBooNE

MicroBooNE is a Liquid Argon Time Projection Chamber, able to image neutrino interactions with excellent spatial and timing resolution, enabling the identification of complex final states resulting from neutrino-nucleus interactions. This poster will provide an overview of measurements for rare final states, such as and η production. These processes both provide unique sensitivities to the interplay between nucleon-level cross-section physics and nuclear-level physics, as well as account for sources of background in proton decay experiments. Furthermore, this poster showcases MicroBooNE’s measurements of total and first-order differential cross-sections on argon for muon neutrino interactions producing neutral pions in the final-state. These interactions will dominate the event rates observed at forthcoming high-precision neutrino experiments.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

EFRC-MUSE: Multi-Scale Fluid-Solid Interactions in Architected and Natural Materials

Phase interactions and fluid properties in geological and other environments are critical in applications ranging from hydrogen production and geologic storage and recovery, carbon dioxide storage and sequestration, and the sustainable use of water resources. The four goals of EFRC-MUSE: Multi-Scale Fluid-Solid Interactions in Architected and Natural Materials were based on the priority directions articulated in the Basic Research Needs documents, and the scientific needs in nanoscience. 1. Develop a fundamental understanding of confinement and surface interactions in mesoscale media with nanometer-sized pores on the phase behavior, thermodynamic and multiphase flow properties of multicomponent fluid mixtures. 2. Examine the impact of mineralogy and material heterogeneity on mechanical properties to better understand chemo-mechanical interactions in material failure. 3. Determine in-operando cross-scale structural and nanostructural material properties with fluids in confinement and flow under realistic condi

58 GEOSCIENCES↗

Harnessing photoautotroph-methanotroph interactions for biogas conversion to fuels and chemicals using binary consortia (Project Final Technical Report)

Industrial, municipal, and agricultural waste streams containing stranded organic carbon represent a significant and underutilized feedstock to produce fuels and chemicals. With anaerobic digestion deployed at large scales to capture organic waste streams, over 6 million tons of biogas are available today. However, the utilization of biogas represents a significant challenge due to its low pressure and presence of contaminants such as H 2 S, ammonia, and volatile organic carbon compounds. To tap into this immense potential, effective biotechnologies that co-utilize both CO 2 and CH 4 are needed. Recent studies demonstrated that, in nature, microbial communities have developed a highly efficient way to recover energy and capture carbon from both CH 4 and CO 2 through metabolic coupling of methane oxidation to oxygenic photosynthesis. Using two synthetic methanotroph – photoautotroph (M-P) co-cultures that exhibit stable growth under a broad range of cultivation conditions, in this project we proposed to harness the interspecies interactions within these cocultures for biogas conversion to fuels and chemicals. To facilitate this overarching objective, we aim to develop experimental and computational tools to gain qualitative and quantitative understandings on the interactions and dynamics of the coculture at both systems and molecular levels, and to validate our findings through experiments and mutant development. The fundamental understanding on the interactions and dynamics of the photoautotroph-methanotroph will lay the foundation for the design and optimization of synthetic binary consortia for production of fuels and chemicals from biogas. We expect the knowledge gained from this project may be generally applicable to other cross-feeding binary consortium, and the tools developed can be adapted to study the interactions and dynamics of other multi-organism platforms.

09 BIOMASS FUELS↗

New Measurement of Electron Neutrino Interactions on Argon in MicroBooNE

MicroBooNE, located at the Fermi National Accelerator Laboratory, is an 85-tonne liquid argon time-projection chamber designed to study neutrinos from the Booster Neutrino Beam and Neutrinos at the Main Injector (NuMI) beam. Understanding neutrino-nucleon interactions is essential for improving the accuracy of neutrino event generators, which are critical for modelling neutrino behaviour and interpreting data from oscillation experiments. The NuMI beam's high electron neutrino flux relative to its muon neutrino flux makes it particularly suited to probe these interactions. This poster presents new single-differential cross-section measurements of charged-current electron-neutrino interactions on argon with protons and no pions in the final state. These results use data from NuMI beam operations in both neutrino and antineutrino modes. Cross sections are reported as functions of key kinematic observables, including electron energy, total visible energy, and the opening angle between the electron and leading proton. Interaction rates as a function of proton multiplicity are also shown. These results are compared to theoretical predictions generated by widely used neutrino event generators.

Barnard, Abbey G. [Oxford U.] (ORCID:0000000161171↗

Air-sea interactions yielding rapid Beaufort Sea ice losses during the 2021 ONR THINICE Pilot Field Campaign

Seasonal sea ice coverage has declined in the Pacific Arctic region. Losses of the ice cover have modified the region’s surface heat and momentum fluxes providing weather systems more direct interaction with the upper ocean. For example, recent cyclones that have passed over these waters have initiated multiple air-sea interactions and have impacted mixed layer depth, wave properties, and sea ice mass budgets due to diabatic and/or advective processes. As a United States Office of Naval Research (ONR) Departmental Research initiative, one key component of the ONR THINICE program was to advance knowledge on Arctic cyclone coupling with the ocean surface, its ice cover, and understand how such coupling can lead to rapid ice loss. Leading up to the primary field campaign in August 2022, a pilot field campaign from 19 August to 13 September 2021 focused in Utqiagvik, Alaska and Longyearbyen, Svalbard was carried out. This period was marked by frequent Arctic cyclones, periods of strong low-level winds, and stints of extreme short-term Beaufort Sea ice area losses. Cyclones traversed these waters much more frequently than usual during this 26-day period, but did not exhibit extreme central pressures indicative of high intensity and impactful storms. Using ERA5 atmospheric reanalysis fields, CERES and AIRS surface flux retrievals, and in situ sensor data collected from ice-tethered profilers and ice mass balance buoys, we highlight air-sea-ice interactions in the Beaufort Sea during and between these cyclones leading up to extreme ice loss events. Our case study analysis is aimed at understanding how Arctic cyclones, including air-sea interactions prompted by their passage over the marginal ice zone, influence the end-of-summer ice conditions and ice loss events. This study provides an example where frequent, yet weak storms drive rather large marginal sea-scale losses albeit with heterogenous sea ice effects at local scales.

Ballinger, Thomas [International Arctic Research C↗

Aerosol-Cloud Interactions and the Intersection of Climate Forcing and Feedback

The goal of this project has been to understand at the process level how the interaction of aerosols and cloud microphysics may alter the cloud response to climate change from the scale of turbulence to the global scale. Atmospheric aerosols (suspended particulates) have a unique role to play in the climate system. Anthropogenic aerosols may be an air pollution hazard and degrade human health. Their presence also results in the direct scattering or absorption of sunlight, with small net impacts on climate. But aerosols are also a key part of cloud formation, as the locations on which cloud droplets and ice crystals form. Understanding these Aerosol Cloud Interactions (ACI) is a critical uncertainty for climate models, including the Energy Exascale Earth System Model (E3SM), and affects how well models like E3SM can simulate the past and future. This work aims to understand cloud microphysics as well as the interaction of aerosol forcing and cloud feedback through improving our understanding of aerosol-cloud interactions (ACI) by looking at their uncertainty in critical environments at the process level. It will also contribute to the development of E3SM. Specific goals include: first, high level analysis of Perturbed Parameter Ensemble (PPE) simulations already available from the Community Earth System Model (CESM) and E3SM. Second, detailed analysis of recent changes to temperature and the role of aerosols.

54 ENVIRONMENTAL SCIENCES↗

Studying MeV Scale Neutron Interactions in DUNE ND-LAr 2x2 Demonstrator

The Deep Underground Neutrino Experiment (DUNE) is a long-baseline neutrino oscillation experiment designed to make high-precision measurements of neutrino oscillation parameters and probe for new physics using a neutrino beam produced at Fermilab and measured at a near detector complex and a far detector located 1,300 km away at the Sanford Underground Research Facility. Precise neutrino energy reconstruction is essential for these measurements, with neutron production in neutrino–argon interactions representing a significant source of systematic uncertainty, as neutrons can carry away significant energy, making their detection and characterization crucial. DUNE’s near detector complex includes ND-LAr, a Liquid Argon Time Projection Chamber (LArTPC) detector designed to mirror the far detector technology and constrain neutrino–argon interaction systematics. The DUNE 2x2 Demonstrator, a pixelated LArTPC based on the ArgonCube design, serves as a prototype for ND-LAr. During 2x2 operations from October to November 2026, an Americium–Beryllium (AmBe) neutron source was deployed near the detector cryostat to obtain a high-statistics sample of neutron interactions. This poster presents progress in studying MeV-scale neutron interactions in this dataset by identifying de-excitation gammas from neutron capture on argon, providing a method for neutron identification and charge readout system calibration in future DUNE detectors.

Mao, Edgar [Syracuse U.] (ORCID:0009000600893306)↗