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At least 955 records · Page 53

Optimizing Landsat Next Shortwave Infrared Bands for Crop Residue Characterization

This study focused on optimizing the placement of shortwave infrared (SWIR) bands for pixel-level estimation of fractional crop residue cover (f R ) for the upcoming Landsat Next mission. We applied an iterative wavelength shift approach to a database of crop residue field spectra collected in Beltsville, Maryland, USA (n = 916) and computed generalized two- and three-band spectral indices for all wavelength combinations between 2000 and 2350 nm, then used these indices to model field-measured f R . A subset of the full dataset with a Normalized Difference Vegetation Index (NDVI) < 0.3 threshold (n = 643) was generated to evaluate green vegetation impacts on f R estimation. For the two-band wavelength shift analyses applied to the NDVI < 0.3 dataset, a generalized normalized difference using 2226 nm and 2263 nm bands produced the top f R estimation performance (R 2 = 0.8222; RMSE = 0.1296). These findings were similar to the established two-band Shortwave Infrared Normalized Difference Residue Index (SINDRI) (R 2 = 0.8145; RMSE = 0.1324). Performance of the two-band generalized normalized difference and SINDRI decreased for the full-NDVI dataset (R 2 = 0.5865 and 0.4144, respectively). For the three-band wavelength shift analyses applied to the NDVI < 0.3 dataset, a generalized ratio-based index with a 2031–2085–2216 nm band combination, closely matching established Cellulose Absorption Index (CAI) bands, was top performing (R 2 = 0.8397; RMSE = 0.1231). Three-band indices with CAI-type wavelengths maintained top f R estimation performance for the full-NDVI dataset with a 2036–2111–2217 nm band combination (R 2 = 0.7581; RMSE = 0.1548). The 2036–2111–2217 nm band combination was also top performing in f R estimation (R 2 = 0.8690; RMSE = 0.0970) for an additional analysis assessing combined green vegetation cover and surface moisture effects. Our results indicate that a three-band configuration with band centers and wavelength tolerances of 2036 nm (±5 nm), 2097 nm (±14 nm), and 2214 (±11 nm) would optimize Landsat Next SWIR bands for f R estimation.

Landsat Next↗

The MOOSE fluid properties module

The Fluid Properties module within the Multiphysics Object-Oriented Simulation Environment (MOOSE) is used to compute fluid properties for numerous applications, ranging from nuclear reactor thermal hydraulics to geothermal energy. Those applications drove the development of the module to enable numerous different fluid equations of states, property lookups with primitive and conserved flow variable to cater to pressure and density-driven solvers, and an object-oriented design facilitating expansion and maintenance. Each fluid property is implemented in its own class but inherits capabilities such as automatic differentiation, automated out-of-bounds handling or variable conversion capabilities. Here, this paper presents the module, its design, its user and developer interface, its content in terms of fluids and properties, and several of its applications showing its major role in the MOOSE simulation ecosystem.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Electrochemical grand potential-based phase-field simulation of electric field-assisted sintering

Here, an electrochemical grand potential functional was proposed to describe the sintering of an ionic ceramic green body. The resultant phase-field description enables simulation of the consolidation of an arbitrary number of granular particles and their interactions with the surrounding void phase. The model includes the effects of charged vacancies and the associated interactions between internal and applied electric fields. Defect segregation to grain boundaries is also accounted for, as well as enhanced interfacial defect mobilities. The model was parameterized for Y 2 O 3 . Simulations of two-particle systems showed that the applied electric field had an increasingly important impact on neck growth as particle size increased. A sudden rapid increase in temperature occurred for larger field strengths, which has been reported to be correlated to the onset of a flash event in flash sintering. Simulations of many particles showed that internal heat generation by Joule heating was localized at particle–particle contacts (grain boundaries), even though their conductivities were lower than nearby internal particle-void interfaces. A percolative path for ionic charge across the green body and the ceramic sintered solid was thus defined, accelerating the Joule heating process as the porosity of the green body is removed.

36 MATERIALS SCIENCE↗

Magnetic interactions in strongly correlated systems: Spin and orbital contributions

We present a technique to map an electronic model with local interactions (a generalized multi-orbital Hubbard model) onto an effective model of interacting classical spins, by requiring that the thermodynamic potentials associated to spin rotations in the two systems are equivalent up to second order in the rotation angles, when the electronic system is in a symmetry-broken phase. This allows to determine the parameters of relativistic and non-relativistic magnetic interactions in the effective spin model in terms of equilibrium Green’s functions of the electronic model. The Hamiltonian of the electronic system includes, in addition to the non-relativistic part, relativistic single-particle terms such as the Zeeman coupling to an external magnetic field, spin–orbit coupling, and arbitrary magnetic anisotropies; the orbital degrees of freedom of the electrons are explicitly taken into account. We determine the complete relativistic exchange tensors, accounting for anisotropic exchange, Dzyaloshinskii–Moriya interactions, as well as additional non-diagonal symmetric terms (which may include dipole–dipole interaction). The expressions of all these magnetic interactions are determined in a unified framework, including previously disregarded features such as the vertices of two-particle Green’s functions and non-local self-energies. We do not assume any smallness in spin–orbit coupling, so our treatment is in this sense exact. Finally, we show how to distinguish and address separately the spin, orbital and spin–orbital contributions to magnetism, providing expressions that can be computed within a tight-binding Dynamical Mean Field Theory.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Metabolic kinetic modeling provides insight into complex biological questions, but hurdles remain

Metabolic models containing kinetic information can answer unique questions about cellular metabolism that are useful to metabolic engineering. Several kinetic modeling frameworks have recently been developed or improved. In addition, techniques for systematic identification of model structure, including regulatory interactions, have been reported. Each framework has advantages and limitations, which can make it difficult to choose the most appropriate framework. Common limitations are data availability and computational time, especially in large-scale modeling efforts. However, recently developed experimental techniques, parameter identification algorithms, as well as model reduction techniques help alleviate these computational bottlenecks. Opportunities for additional improvements may come from the rich literature in catalysis and chemical networks. In all, kinetic models are positioned to make significant impact in cellular engineering.

59 BASIC BIOLOGICAL SCIENCES↗

Data Center IT Equipment Energy Assessment Tools: Current State of Commercial Tools, Proposal for a Future Set of Assessment Tools

This research project, which was conducted during the Summer and Fall of 2011, investigated some commercially available assessment tools with a focus on IT equipment to see if such tools could round out the DC Pro tool suite. In this research, the assessment capabilities of the various tools were compiled to help make “non-biased” information available to the public. This research should not be considered to be exhaustive on all existing vendor tools although a number of vendors were contacted. Large IT equipment OEM’s like IBM and Dell provide their proprietary internal automated software which does not work on any other IT equipment. However, found two companies with products that showed promise in performing automated assessments for IT equipment from different OEM vendors. This report documents the research and provides a list of software products reviewed, contacts and websites, product details, discussions with specific companies, a set of recommendations, and next steps. As a result of this research, a simple 3-level approach to an IT assessment tool is proposed along with an example of an assessment using a simple IT equipment data collection tool (Level 1, spreadsheet). The tool has been reviewed with the Green Grid and LBNL staff. The initial feedback has been positive although further refinement to the tool will be necessary. Proposed next steps include a field trial of at least two vendors’ software in two different data centers with an objective to prove the concept, ascertain the extent of energy and computational assessment, ease of installation and opportunities for continuous improvement. Based on the discussions, field trials (or case studies) are proposed with two vendors – JouleX (expected to be completed in 2012) and Sentilla.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Approximating and incorporating model uncertainty in an inversion for seismic source functions: Preliminary results

We present preliminary work on propagating model uncertainty into the estimation of the time domain source time functions of the seismic source. Our method is based on an estimated model covariance function, which we estimate from the data. The model covariance function is then used to construct a suite of surrogate Greens functions which we use in a Monte Carlo type inversion scheme. The result is a probability density function of the six independent source time functions, each of which corresponds to an individual component of the seismic moment tensor. We compare the results of our method with those obtained using a computationally expensive finite difference Monte Carlo method and find that our new method produces results that are deficient in low frequencies. The advantage of our new method, which we term the Karhunen-Loeve Monte Carlo (KLMC) method, is that is several orders of magnitude faster than our current method, which uses a finite difference scheme to produce the suite of forward models.

42 ENGINEERING↗

The use of multispectral sensing techniques to detect ponderosa pines trees under stress from insects or diseases

The detection of stress induced by bark beetles in conifers is reviewed in two sections: (1) the analysis of very small scale aerial photographs taken by NASA's RB-57F aircraft on August 10, 1969, and (2) the analysis of multispectral imagery obtained by the optical-mechanical line scanner. Underexposure of all films taken from the RB-57 aircraft and inadequate flight coverage prevented drawing definitive conclusions regarding optimum scales and film combinations to detect the discolored infestations. Preprocessing of the scanner signals by both analog and digital computers improved the accuracy of target recognition. Selection and ranking of the best channels for signature recognition was the greatest contribution of digital processing. Improvements were made in separating hardwoods from conifers and old-kill pine trees from recent discolored trees and from healthy trees, but accuracy of detecting the green infested trees is still not acceptable on either the SPARC or thermal-contouring processor. From six years of experience in processing line scan data it is clear that the greatest gain in previsual detection of stress will occur when registered multispectral data from a single aperture or common instantaneous field of view scanner system can be collected and processed.

Heller, R. C.↗

Finite-volume scheme for transonic potential flow about airfoils and bodies in an arbitrarily-shaped channel

A conservative finite-volume difference scheme is developed for the potential equation to solve transonic flow about airfoils and bodies in an arbitrary channel. The scheme employs a mesh which is a nearly-conformal 'O' mesh about the airfoil and nearly orthogonal at the channel walls. The mesh extends to infinity upstream and downstream, where the mapping is singular. Special procedures are required to treat the singularities at infinity, including computation of the metrics near those points. Channels with exit areas different from inlet areas are solved; a body with a sting mount is an example of such a case.

South, J. C., Jr.↗

Behind the scenes during a comet encounter

The contributions of NSSDC and SPAN to the September 11, 1985 ICE-Comet Giacobini-Zinner encounter are outlined. The NSSDC is a centralized archive and distribution center for data obtained from NASA space and earth science flight investigations while SPAN is a mission-independent computer-to-computer network used to gain electronic access to NASA facilities, coinvestigators, and data for many scientists. The ICE encounter revealed the value of SPAN and NSSDC in providing rapid access to important science data.

Green, James L.↗

State-to-state rotational phase coherence effect on the vibration-rotation band shape - An accurate quantum calculation for CO-He

Accurate coupled state calculations of line coupling are performed for infrared lines of carbon monoxide perturbed by helium. Such calculations lead to both real and imaginary line couplings. For the first time, the effect of this imaginary line couplings, connected with state-to-state rotational phase coherences, on infrared band shape, is analyzed. An extension of detailed balance principle to the complex plane is suggested from the present computed off-diagonal cross sections. This allows us to understand the physical mechanism underlying the weak effect of phase coherences on CO-He infrared band shape.

Boissoles, J.↗

Vibro-Acoustic FE Analyses of the Saab 2000 Aircraft

A finite element model of the Saab 2000 fuselage structure and interior cavity has been created in order to compute the noise level in the passenger cabin due to propeller noise. Areas covered in viewgraph format include the following: coupled acoustic/structural noise; data base creation; frequency response analysis; model validation; and planned analyses.

Green, Inge S.↗

Coupling of Multiple Coulomb Scattering with Energy Loss and Straggling in HZETRN

The new version of the HZETRN deterministic transport code based on Green's function methods, and the incorporation of ground-based laboratory boundary conditions, has lead to the development of analytical and numerical procedures to include off-axis dispersion of primary ion beams due to small-angle multiple Coulomb scattering. In this paper we present the theoretical formulation and computational procedures to compute ion beam broadening and a methodology towards achieving a self-consistent approach to coupling multiple scattering interactions with ionization energy loss and straggling. Our initial benchmark case is a 60 MeV proton beam on muscle tissue, for which we can compare various attributes of beam broadening with Monte Carlo simulations reported in the open literature.

Mertens, Christopher J.↗

Structures in the nucleus of a mouse's nerve cell

This animation depicts the nucleolus, which is the largest structure in the nucleus of a mouse’s nerve cell. The animation shows successive inner layers of the nucleolus shaded in green, blue and red. The outermost blue structure shows masses of heterochromatin, a tightly packed form of DNA, in contact with the nucleolus. (Credit: Berkeley Lab, UCSF)

59 BASIC BIOLOGICAL SCIENCES↗

Brownian dynamics without Green's functions

We develop a Fluctuating Immersed Boundary (FIB) method for performing Brownian dynamics simulations of confined particle suspensions. Unlike traditional methods which employ analytical Green's functions for Stokes flow in the confined geometry, the FIB method uses a fluctuating finite-volume Stokes solver to generate the action of the response functions “on the fly.” Importantly, we demonstrate that both the deterministic terms necessary to capture the hydrodynamic interactions among the suspended particles, as well as the stochastic terms necessary to generate the hydrodynamically correlated Brownian motion, can be generated by solving the steady Stokes equations numerically only once per time step. This is accomplished by including a stochastic contribution to the stress tensor in the fluid equations consistent with fluctuating hydrodynamics. We develop novel temporal integrators that account for the multiplicative nature of the noise in the equations of Brownian dynamics and the strong dependence of the mobility on the configuration for confined systems. Notably, we propose a random finite difference approach to approximating the stochastic drift proportional to the divergence of the configuration-dependent mobility matrix. Through comparisons with analytical and existing computational results, we numerically demonstrate the ability of the FIB method to accurately capture both the static (equilibrium) and dynamic properties of interacting particles in flow.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Multihead Attention U‐Net for Magnetic Particle Imaging–Computed Tomography Image Segmentation

Magnetic particle imaging (MPI) is an emerging noninvasive molecular imaging modality with high sensitivity and specificity, exceptional linear quantitative ability, and potential for successful applications in clinical settings. Computed tomography (CT) is typically combined with the MPI image to obtain more anatomical information. Herein, a deep learning‐based approach for MPI‐CT image segmentation is presented. The dataset utilized in training the proposed deep learning model is obtained from a transgenic mouse model of breast cancer following administration of indocyanine green (ICG)‐conjugated superparamagnetic iron oxide nanoworms (NWs‐ICG) as the tracer. The NWs‐ICG particles progressively accumulate in tumors due to the enhanced permeability and retention (EPR) effect. The proposed deep learning model exploits the advantages of the multihead attention mechanism and the U‐Net model to perform segmentation on the MPI‐CT images, showing superb results. In addition, the model is characterized with a different number of attention heads to explore the optimal number for our custom MPI‐CT dataset.

Juhong, Aniwat↗

SU-E-T-36: A GPU-Accelerated Monte-Carlo Dose Calculation Platform and Its Application Toward Validating a ViewRay Beam Model

Purpose: To build a fast, accurate and easily-deployable research platform for Monte-Carlo dose calculations. We port the dose calculation engine PENELOPE to C++, and accelerate calculations using GPU acceleration. Simulations of a Co-60 beam model provided by ViewRay demonstrate the capabilities of the platform. Methods: We built software that incorporates a beam model interface, CT-phantom model, GPU-accelerated PENELOPE engine, and GUI front-end. We rewrote the PENELOPE kernel in C++ (from Fortran) and accelerated the code on a GPU. We seamlessly integrated a Co-60 beam model (obtained from ViewRay) into our platform. Simulations of various field sizes and SSDs using a homogeneous water phantom generated PDDs, dose profiles, and output factors that were compared to experiment data. Results: With GPU acceleration using a dated graphics card (Nvidia Tesla C2050), a highly accurate simulation – including 100*100*100 grid, 3×3×3 mm3 voxels, <1% uncertainty, and 4.2×4.2 cm2 field size – runs 24 times faster (20 minutes versus 8 hours) than when parallelizing on 8 threads across a new CPU (Intel i7-4770). Simulated PDDs, profiles and output ratios for the commercial system agree well with experiment data measured using radiographic film or ionization chamber. Based on our analysis, this beam model is precise enough for general applications. Conclusions: Using a beam model for a Co-60 system provided by ViewRay, we evaluate a dose calculation platform that we developed. Comparison to measurements demonstrates the promise of our software for use as a research platform for dose calculations, with applications including quality assurance and treatment plan verification.

60 APPLIED LIFE SCIENCES↗