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At least 955 records · Page 53

Real‐time XFEL data analysis at SLAC and NERSC: A trial run of nascent exascale experimental data analysis

X‐ray scattering experiments using free electron lasers (XFELs) are a powerful tool to determine the molecular structure and function of unknown samples (such as COVID‐19 viral proteins). XFEL experiments are a challenge to computing in two ways: (i) due to the high cost of running XFELs, a fast turnaround time from data acquisition to data analysis is essential to make informed decisions on experimental protocols; (ii) data‐collection rates are growing exponentially, requiring new scalable algorithms. Here we report our experiences analyzing data from two experiments at the Linac Coherent Light Source (LCLS) during September 2020. Raw data were analyzed on NERSC's Cori XC40 system, using the Superfacility paradigm: our workflow automatically moves raw data between LCLS and NERSC, where it is analyzed using the software package CCTBX. We achieved real time data analysis with a turnaround time from data acquisition to full molecular reconstruction in as little as 10 min—sufficient time for the experiment's operators to make informed decisions. By hosting the data analysis on Cori, and by automating LCLS‐NERSC interoperability, we achieved a data analysis rate which matches the data acquisition rate. Completing data analysis within 10 min is a first for XFEL experiments and an important milestone if we are to keep up with data‐collection trends.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Real-Time XFEL Data Analysis at SLAC and NERSC: a Trial Run of Nascent Exascale Experimental Data Analysis

X-ray scattering experiments using Free Electron Lasers (XFELs) are a powerful tool to determine the molecular structure and function of unknown samples (such as COVID-19 viral proteins). XFEL experiments are a challenge to computing in two ways: i) due to the high cost of running XFELs, a fast turnaround time from data acquisition to data analysis is essential to make informed decisions on experimental protocols; ii) data collection rates are growing exponentially, requiring new scalable algorithms. Here we report our experiences analyzing data from two experiments at the Linac Coherent Light Source (LCLS) during September 2020. Raw data were analyzed on NERSC's Cori XC40 system, using the Superfacility paradigm: our workflow automatically moves raw data between LCLS and NERSC, where it is analyzed using the software package CCTBX. We achieved real time data analysis with a turnaround time from data acquisition to full molecular reconstruction in as little as 10 min -- sufficient time for the experiment's operators to make informed decisions. By hosting the data analysis on Cori, and by automating LCLS-NERSC interoperability, we achieved a data analysis rate which matches the data acquisition rate. Furthermore, completing data analysis with 10 mins is a first for XFEL experiments and an important milestone if we are to keep up with data collection trends.

Blaschke, Johannes P.↗

Real time control of satellite tracking station operation for millimeter wave experiments and associated data processing

Real time control, data collection, and data reduction of an earth-satellite millimeter wave system are discussed. Experiment control and data processing requirements are considered with attention to signal data acquisition, weather data acquisition, support and control functions, task classifications, the fundamental data acquisition procedure, and the computer-experiment interface. The general analysis is applied to a description of the Communications Technology Satellite system and its hardware.

Kauffman, S. R.↗

Evaluate data lake design for the accelerator control system

Increasing precision in automation for modern particle accelerators not only creates a requirement to gather data from all devices but also demands scalable and high-performance data infrastructure with the capability of handling vast incoming device data. A well architected data lake is suitable for such a system which integrates real-time data acquisition, transient data caching, and long-term storage. This paper evaluates data lake architecture for an Accelerator Control System (ACS), focusing on two critical components of a data lake, data cache and long-term storage.

Jaikar, Amol [Fermilab]↗

Software For Uniaxial Mechanical Testing Of Materials

Materials Testing Software system designed to simplify and automate both routine and not-so-routine materials-testing tasks encountered in laboratory. Supports plan/test/analyze cycle through collection of programs, each optimized to specific task. Gives precise control over nature of command waveforms and acquisition of data, including dynamically variable waveform types, sets of data-acquisition channels, and data rates. Differing command and data-acquisition rates required for exploring creep and fatigue material behavior easily accommodated. Written in Modula-2.

Mcgaw, M. A.↗

ERTS-1 data collection system: Status and performance

The Data Collection System flown on the first Earth Resources Technology Satellite (ERTS-1) relays earth resources data from remotely located in-situ sensors to Goddard Space Flight Center. Data is received at Goddard at least twice each day from every sensor installation and is distributed to users (who operate the sensors and transmitters) by mail and teletype. The system consists of a data formatting and transmitting unit, called the Data Collection Platform (DCP), a receiver and a retransmitter aboard ERTS-1; and receiving, demodulating and decoding equipment located at the Goldstone, California and Goddard data acquisition stations. Data is transmitted from the data acquisition stations to the ERTS Control Center at Goddard, then to the NASA (ERTS) Data Processing Facility (NDPF) where it is processed and distributed to users. Experience to date indicates that the design of the ERTS-1 Data Collection System is adequate for operational use for 50% of the users and, with minor modifications, could meet the requirements of 75%. Some users will have to augment the system by other data collection techniques to meet their operational requirements.

Painter, J. E.↗

Measurement and analysis of fast transient instabilities

In this study, a novel beam diagnostics technique to detect fast beam transient instabilities and glitches has been developed at National Synchrotron Light Source II (NSLS-II). Vertical spikes of beam size and centroid have been observed occasionally and randomly during high current operations. These spikes are believed to be caused by ion instabilities associated with vacuum activity localized in the ring. With the functionality of gated beam position monitor (BPM), the newly developed technique utilizes turn-by-turn (TBT) data to detect beam centroid glitches. Whenever one turn trajectory deviates from a predefined window, a global control event is generated to trigger an online TBT data acquisition. The data acquisition is synchronized for all BPMs around the ring. In the meantime, the bunch-by-bunch (BxB) data, which is acquired from a single dedicated feedback BPM, has also been collected for analyzing possible coupled bunch instabilities (CBI). In addition to CBI caused mainly by ion bursts, other types of fast transient motions, such as, the top-off residual disturbance and fast orbit disturbance, have been captured with the new tool. Lastly, the sources of the glitches can be approximately localized with the synchronized TBT data from multiple BPMs around the ring.

43 PARTICLE ACCELERATORS↗

NUM-DAT File Format Specification: Used in M-9 Gun Experiment Data Archiving

The M-9 Shock and Detonation Physics group executes experiments on gun and explosive platforms with large numbers of oscilloscopes used for data acquisition. The data acquisition from these oscilloscopes was automated many years ago using a custom piece of software called RunDig . The default save format from this software is a custom structure referred to as "NUM-DAT" format. This file format includes a text ".DAT" file which is a header file used to interpret the binary ".NUM" file which contains the oscilloscope data. The data save format was originally developed by John Vorthman and has been in use by M-9 personnel for over 20 years. This data format has been used for archiving data from experiments performed by M-9 personnel at TA-40, TA-39, and the TA-55 Impact Test Facility. Numerous custom analysis and visualization programs have also been developed, and continue to be used, that utilize this data format. This document describes the NUM-DAT format and provides code examples for reading the format and converting it to other formats.

47 OTHER INSTRUMENTATION↗

Results from a multi-laboratory ocean metaproteomic intercomparison: effects of LC-MS acquisition and data analysis procedures

Metaproteomics is an increasingly popular methodology that provides information regarding the metabolic functions of specific microbial taxa and has potential for contributing to ocean ecology and biogeochemical studies. A blinded multi-laboratory intercomparison was conducted to assess comparability and reproducibility of taxonomic and functional results and their sensitivity to methodological variables. Euphotic zone samples from the Bermuda Atlantic Time-series Study (BATS) in the North Atlantic Ocean collected by in situ pumps and the autonomous underwater vehicle (AUV) Clio were distributed with a paired metagenome, and one-dimensional (1D) liquid chromatographic data-dependent acquisition mass spectrometry analysis was stipulated. Analysis of mass spectra from seven laboratories through a common bioinformatic pipeline identified a shared set of 1056 proteins from 1395 shared peptide constituents. Quantitative analyses showed good reproducibility: pairwise regressions of spectral counts between laboratories yielded R 2 values averaged 0.62±0.11, and a Sørensen similarity analysis of the top 1000 proteins revealed 70 %–80 % similarity between laboratory groups. Taxonomic and functional assignments showed good coherence between technical replicates and different laboratories. A bioinformatic intercomparison study, involving 10 laboratories using eight software packages, successfully identified thousands of peptides within the complex metaproteomic datasets, demonstrating the utility of these software tools for ocean metaproteomic research. Lessons learned and potential improvements in methods were described. Future efforts could examine reproducibility in deeper metaproteomes, examine accuracy in targeted absolute quantitation analyses, and develop standards for data output formats to improve data interoperability. Together, these results demonstrate the reproducibility of metaproteomic analyses and their suitability for microbial oceanography research, including integration into global-scale ocean surveys and ocean biogeochemical models.

59 BASIC BIOLOGICAL SCIENCES↗

AMS/NRCan Joint Survey Report: Aerial Campaign

In January 2014 the U.S. Department of Energy (DOE), National Nuclear Security Administration (NNSA) Aerial Measuring System (AMS) and the Natural Resources Canada (NRCan) Nuclear Emergency Response project conducted a series of joint surveys at a number of locations in Nevada including the Nevada National Security Site (NNSS). The goal of this project was to compare the responses of the two agencies’ aerial radiation detection systems and data analysis techniques. This test included varied radioactive surface contamination levels and isotopic composition experienced at the NNSS and the differing data processing techniques utilized by the respective teams. Because both teams used the commercial aerial radiation detection systems from Radiation Solutions, Inc., the main focus of the campaign was to investigate the data acquisition techniques, data analysis, and ground-truth verification. The NRCan system consisted of four 4" × 4" × 16" NaI(Tl) scintillator crystals of which two were externally mounted in a modified commercial cargo basket certified for the Eurocopter AS350; the NNSA AMS system consisted of twelve 2" × 4" × 16" NaI(Tl) crystals in externally mounted dedicated pods. For NRCan, the joint survey provided an opportunity to characterize their system’s response to extended sources of various fission products at the NNSS. Since both systems play an important role in their respective countries’ national framework of radiological emergency response and are subject to multiple mutual cooperation agreements, it was important for each country to obtain more thorough knowledge of how they would employ these important assets and define the roles that they would each play in an actual response.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Optical aurora and its relationship to measurements from satellites, VHF radar and incoherent scatter radars

Examples are given of coordinated programs in Alaska which involve satellites, radars, ground optical instrumentation, and other types of observing satellites for the study of atmospheric and magnetospheric geophysics. Programs include coincidence data acquisition, scheduled data acquisition, and planned experiments. The use of optical triangulation techniques to determine the position of the aurora in order to place the other measurements in the perspective of the overall auroral morphology is detailed.

Romick, G. J.↗

Particle displacement tracking applied to air flows

Electronic Particle Image Velocimeter (PIV) techniques offer many advantages over conventional photographic PIV methods such as fast turn around times and simplified data reduction. A new all electronic PIV technique was developed which can measure high speed gas velocities. The Particle Displacement Tracking (PDT) technique employs a single cw laser, small seed particles (1 micron), and a single intensified, gated CCD array frame camera to provide a simple and fast method of obtaining two-dimensional velocity vector maps with unambiguous direction determination. Use of a single CCD camera eliminates registration difficulties encountered when multiple cameras are used to obtain velocity magnitude and direction information. An 80386 PC equipped with a large memory buffer frame-grabber board provides all of the data acquisition and data reduction operations. No array processors of other numerical processing hardware are required. Full video resolution (640x480 pixel) is maintained in the acquired images, providing high resolution video frames of the recorded particle images. The time between data acquisition to display of the velocity vector map is less than 40 sec. The new electronic PDT technique is demonstrated on an air nozzle flow with velocities less than 150 m/s.

Wernet, Mark P.↗

Particle displacement tracking applied to air flows

Electronic Particle Image Velocimetric (PIV) techniques offer many advantages over conventional photographic PIV methods such as fast turn around times and simplified data reduction. A new all electronic PIV technique was developed which can measure high speed gas velocities. The Particle Displacement Tracking (PDT) technique employs a single CW laser, small seed particles (1 micron), and a single intensified, gated CCD array frame camera to provide a simple and fast method of obtaining two-dimensional velocity vector maps with unambiguous direction determination. Use of a single CCD camera eliminates registration difficulties encountered when multiple cameras are used to obtain velocity magnitude and direction information. An 80386 PC equipped with a large memory buffer frame-grabber board provides all of the data acquisition and data reduction operations. No array processors of other numerical processing hardware are required. Full video resolution (640 x 480 pixel) is maintained in the acquired images, providing high resolution video frames of the recorded particle images. The time between data acquisition to display of the velocity vector map is less than 40 sec. The new electronic PDT technique is demonstrated on an air nozzle flow with velocities less than 150 m/s.

Wernet, Mark P.↗

The Large Area Pulsed Solar Simulator (LAPSS)

The Large Area Pulsed Solar Simulator (LAPSS) has been installed at JPL. It is primarily intended to be used to illuminate and measure the electrical performance of photovoltaic devices. The simulator, originally manufactured by Spectrolab, Sylmar, CA, occupies an area measuring about 3 m wide x 12 m long. The data acquisition and data processing subsystems have been modernized. Tests on the LAPSS performance resulted in better than plus or minus 2 percent uniformity of irradiance at the test plane and better than plus or minus 0.3 percent measurement repeatability after warm-up. Glass absorption filters reduce the ultraviolet light emitted from the xenon flash lamps. This results in a close match to three different standard airmass zero and airmass 1.5 spectral irradiances. The 2-ms light pulse prevents heating of the device under test, resulting in more reliable temperature measurements. Overall, excellent electrical performance measurements have been made of many different types and sizes of photovoltaic devices. Since the original printing of this publication, in 1993, the LAPSS has been operational and new capabilities have been added. This revision includes a new section relating to the installation of a method to measure the I-V curve of a solar cell or array exhibiting a large effective capacitance. Another new section has been added relating to new capabilities for plotting single and multiple I-V curves, and for archiving the I-V data and test parameters. Finally, a section has been added regarding the data acquisition electronics calibration.

Mueller, R. L.↗

Remote Radiation Sensing Using Aerial and Ground Platforms

Remote sensing of ionizing radiation has a significant role in waste management, nuclear material management and nonproliferation, and radiation safety. Robotic platforms can surpass the number of tasks that are achieved by humans. With this technique, the operator's radiation exposure can be decreased. Remote sensing allows for the evaluation and monitoring of radiological contamination. Gamma-ray and neutron sensors were integrated onto the robotic platforms. This approach allows for the radiation sensor data to be dynamically tracked and mapped thus enabling further analysis of the radiation flux in temporal and spatial domains. The goal is to complete scheduled tasks while the robot is being irradiated. To achieve this, electronic components must be shielded and radiation hardened. CZT Detector: Cadmium Zinc Telluride (CZT) detector technology has been a promising solution for gamma-ray and x-ray measurements. Detector data is transferred to the Odroid minicomputer that controls and powers the module via the USB. Robot Operating System (ROS) was utilized for data acquisition and data fusion. The Mariscotti method was employed for the spectrum analysis. A function was programmed in ROS for the automatic identification of photopeaks. CLYC Detector: A Cs{sub 2}LiYCl{sub 6}:Ce{sup 3+} (CLYC) detector was used for simultaneous medium-resolution gamma-ray measurements and neutron counting. A 2.54 cm diameter photomultiplier tube (PMT) was equipped with a high voltage supply and a miniature digitizer. Gamma-ray excitation: fast core-to-valence luminescence (CVL) with 1 ns decay constant, and prompt Ce{sup 3+} emission with 50 ns decay constant. Neutron excitation: slow cerium self-trapped excitation (Ce{sup 3+} STE), 1000 ns decay constant. Radiation Source Localization: Maximum Likelihood Estimation (MLE) and gradient-based methods were used to locate the position of a radiation source based on measured radiation intensities. Multi-Particle Transport Code FLUKA: Estimation of radiation damage of the electronic components is important in order to optimize the robot's operational time while it is irradiated. Displacement per atom (DPA) represents the radiation damage in materials exposed to the ionizing radiation. Various shielding layers of different thickness t were analyzed (< 5% statistical error). The model of the controller of the UAS was designed in FLUKA. Conclusion: CZT and CLYC detectors were integrated onto the robotic platforms. Radiation source localization and contour mapping using robotic platforms were studied. Functions for data analysis and fusion were developed in ROS. FLUKA code was utilized to analyze DPA values. Layers of low-density and high-density materials were used to shield the UAS electronics.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Two-terminator RF adapter for background/environment noise measurement

A two-terminator RF adapter for background noise measurement in a test environment comprises a system test port comprising a system test port termination and a system test port connector to connect to a system under test; and a data acquisition port, comprising a data acquisition port termination and a data acquisition port connector to connect to a data acquisition system.

Kolski, Jeffrey↗