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NASA NTRSDate not supplied

NASA GeneLab: Open Science for Life in Space

NASA’s GeneLab helps scientists understand how the fundamental building blocks of life – DNA, RNA, proteins, and metabolites – change from exposure to the space environment including microgravity and cosmic radiation exposure. GeneLab does so by providing fully coordinated epigenomics, genomics, transcriptomics, proteomics, and metabolomics data (collectively known as omics data) alongside essential metadata describing each spaceflight and space-relevant experiment. The open-access GeneLab repository currently consists of over 300 omics datasets generated by biological experiments, involving various model organisms, that are relevant to spaceflight. In order to maximize the intelligibility of these data, particularly for users with limited bioinformatics knowledge, GeneLab has started processing and analyzing these datasets to generate differential gene expression data and identify biological and physiological pathways that are dysregulated as a result of spaceflight. To aide GeneLab’s efforts to harmonize and democratize space-relevant omics data, over 130 scientists have joined one of four GeneLab Analysis Working Groups (Animal AWG, Plant AWG, Microbe AWG, Multi-Omics AWG) and together helped develop and adopted standard data analysis workflows for all data types available in GeneLab. Currently, the GeneLab Data System includes a data repository with federated search capability, an online controlled-access toolshed powered by "Galaxy" for users to process data with vetted standard workflows, a workspace for data sharing, a data submission portal, and the ability to browse and visualize transcriptomics processed data. The user interface was designed to be accessible to a broad variety of users, including high school and college students who can use it to learn about omics data analysis and space biology. The visualization portal enhances GeneLab’s ability to democratize omics data by removing the need for bioinformatics expertise to interpret transcriptomics data hosted on GeneLab. This presentation will provide an over-view of NASA’s GeneLab including how to navigate the GeneLab Data System and will conclude by providing resources for opportunities to work with GeneLab and NASA at large.

Amanda M Saravia-Butler↗
NASA NTRSDate not supplied

Working at NASA as a (Molecular) Biologist...

Trained as a biologist, I landed my first job at NASA as a mission scientist on the Rodent Research project. As a mission scientist, I led science activities associated with development, flight, and post-flight analysis of rodent research missions on the ISS in consultation with project engineers, operational specialists, mission PI(s), and mission Implementation Partner(s). I also assessed the feasibility of scientific experiments as a technical and scientific expert in rodent research on the ISS. Eager to learn more about the molecular changes that occur as a result of spaceflight exposure, I transitioned to the NASA GeneLab project where I eventually became the data processing lead. NASA’s GeneLab helps scientists understand how the fundamental building blocks of life – DNA, RNA, proteins, and metabolites – change from exposure to the space environment including microgravity and cosmic radiation exposure. GeneLab does so by providing fully coordinated epigenomics, genomics, transcriptomics, proteomics, and metabolomics data (collectively known as omics data) alongside essential metadata describing each spaceflight and space-relevant experiment. In order to maximize the intelligibility of these data, particularly for users with limited bioinformatics knowledge, GeneLab has started processing and analyzing these datasets to generate differential gene expression data and identify biological and physiological pathways that are dysregulated as a result of spaceflight. The user interface was designed to be accessible to a broad variety of users, including high school and college students who can use it to learn about omics data analysis and space biology. During the CA Space Grant NASA Panel event, I will provide an overview of my work at NASA on both the Rodent Research and GeneLab projects and will conclude by providing resources for opportunities to work with GeneLab and NASA at large.

Amanda M Saravia-Butler↗
NASA NTRSDate not supplied

My Journey to NASA and role as a (Molecular) Biologist…

My journey to NASA started in undergrad, where I performed microbiology research and became hooked in the STEM fields. From there I earned a Ph.D. in Biochemistry and Molecular Biology from Mayo Graduate school where I performed Pancreatic Cancer research and then went on to perform postdoctoral research in Developmental Biology at the University of Miami. Trained as a biologist, I landed my first job at NASA as a mission scientist on the Rodent Research project. As a mission scientist, I led science activities associated with development, flight, and post-flight analysis of rodent research missions on the ISS in consultation with project engineers, operational specialists, mission PI(s), and mission Implementation Partner(s). I also assessed the feasibility of scientific experiments as a technical and scientific expert in rodent research on the ISS. Eager to learn more about the molecular changes that occur as a result of spaceflight exposure, I transitioned to the NASA GeneLab project where I eventually became the data processing lead. NASA’s GeneLab helps scientists understand how the fundamental building blocks of life – DNA, RNA, proteins, and metabolites – change from exposure to the space environment including microgravity and cosmic radiation exposure. GeneLab does so by providing fully coordinated epigenomics, genomics, transcriptomics, proteomics, and metabolomics data (collectively known as omics data) alongside essential metadata describing each spaceflight and space-relevant experiment. To maximize the intelligibility of these data, particularly for users with limited bioinformatics knowledge, GeneLab has started processing and analyzing these datasets to generate differential gene expression data and identify biological and physiological pathways that are dysregulated as a result of spaceflight. The user interface was designed to be accessible to a broad variety of users, including high school and college students who can use it to learn about omics data analysis and space biology. During the CA Space Grant Women in STEM Panel event, I will provide an overview of my journey to NASA including my work at NASA on both the Rodent Research and GeneLab projects. I will conclude by providing resources for opportunities to work with GeneLab and NASA at large followed by links to programs designed specifically to engage women in STEM fields.

Amanda M Saravia-Butler↗
NASA NTRSDate not supplied

My Journey to NASA and Role as a (Molecular) Biologist…

My journey to NASA started in undergrad, where I performed microbiology research and became hooked in the STEM fields. From there I earned a Ph.D. in Biochemistry and Molecular Biology from Mayo Graduate school where I performed Pancreatic Cancer research and then went on to perform postdoctoral research in Developmental Biology at the University of Miami. Trained as a biologist, I landed my first job at NASA as a mission scientist on the Rodent Research project. As a mission scientist, I led science activities associated with development, flight, and post-flight analysis of rodent research missions on the ISS in consultation with project engineers, operational specialists, mission PI(s), and mission Implementation Partner(s). I also assessed the feasibility of scientific experiments as a technical and scientific expert in rodent research on the ISS. Eager to learn more about the molecular changes that occur as a result of spaceflight exposure, I transitioned to the NASA GeneLab project where I eventually became the data processing lead. NASA’s GeneLab helps scientists understand how the fundamental building blocks of life – DNA, RNA, proteins, and metabolites – change from exposure to the space environment including microgravity and cosmic radiation exposure. GeneLab does so by providing fully coordinated epigenomics, genomics, transcriptomics, proteomics, and metabolomics data (collectively known as omics data) alongside essential metadata describing each spaceflight and space-relevant experiment. To maximize the intelligibility of these data, particularly for users with limited bioinformatics knowledge, GeneLab has started processing and analyzing these datasets to generate differential gene expression data and identify biological and physiological pathways that are dysregulated as a result of spaceflight. The user interface was designed to be accessible to a broad variety of users, including high school and college students who can use it to learn about omics data analysis and space biology. During the NASA Ames ECN at Lincoln HS Virtual Panel event, I will provide an overview of my journey to NASA including my work at NASA on both the Rodent Research and GeneLab projects. I will conclude by providing resources for opportunities to work with GeneLab and NASA at large followed by links to programs designed specifically to engage women in STEM fields.

Amanda M Saravia-Butler↗
NASA NTRS2024

Literature Review of Cumulative Noise Metrics Relevant to X-59 Supersonic Overflights

Upcoming studies with the X-59 aircraft will collect dose-response data to understand community response to en-route supersonic noise. This data collection effort will inform regulators in their efforts to potentially update the ban on commercial supersonic flight with acceptable noise standards. Part of the dataset will consist of end-of-day responses to the noise from multiple supersonic overflights. This document provides rationale from relevant literature surrounding which cumulative noise metric to pair with end-of-day survey responses for upcoming community studies with the X-59 aircraft. Despite its deficiencies, day-night average sound level (DNL) summation of candidate single-event metrics remains the most likely choice for a cumulative noise metric for multiple supersonic overflights because 1) it is widely used for other transportation noise sources and 2) its relevance for infrequent events is somewhat plausible, unlike some recent alternative metrics.

sonic boom↗
NASA NTRS2000

BOREAS TGB-8 Monoterpene Concentration Data over the SSA-OBS

The BOREAS TGB-8 team collected data to investigate the controls over NMHC fluxes from boreal forest tree species. This data set contains measurements of monoterpene concentrations in collected foliar gas emissions and foliar samples. The data were collected at the OJP and OBS tower flux sites in the SSA and were the locus for the monoterpene emission measurements. These areas contained mature stands of jack pine and black spruce and were the focal sites in the BOREAS program for studies of biosphere/atmosphere exchange from these two habitat types. The OBS site is situated in a black spruce/sphagnum bog with the largest trees 155 years old and 10-15 m tall. The OJP site is in a jack pine forest, 80 to 120 years old, which lies on a sandy bench of glacial outwash with the largest tree standing 15 m tall. Temporally, the data cover the period of 24-May-1994 to 19-Sep-1994. The data are stored in tabular ASCII files.

Hall, Forrest G.↗
NASA NTRS2000

BOREAS TE-6 Multiband Vegetation Imager Data

The BOREAS TE-6 team collected data in support of its efforts to examine the influence of vegetation and climate on the major carbon fluxes in boreal tree species. A newly developed ground-based canopy imaging system called an MVI was tested and used by the BOREAS TE-06 team to collect measurements of the canopy crap fraction (sky fraction), canopy gap-size distribution (size and frequency of gaps between foliage in canopy), branch architecture, and leaf angle distribution (fraction of leaf area in specific leaf inclination classes assuming azimuthal symmetry). Measurements of the canopy gap-size distribution are used to derive canopy clumping indices that can be used to adjust indirect LAI measurements made in nonrandom forests. These clumping factors will also help to describe the radiation penetration in clumped canopies more accurately by allowing for simple adjustments to Beer's law. Measurements of the above quantities were obtained at BOREAS NSA-OJP site in IFC-2 in 1994, at the SSA-OA in July 1995, and at the SSA-OBS and SSA-OA sites in IFC-2 in 1996. Modeling studies were also performed to further validate MVI measurements and to gain a more complete understanding of boreal forest canopy architecture. By using MVI measurements and Monte Carlo simulations, clumping indices as a function of zenith angle were derived for the three main boreal species studied during BOREAS. The analyzed data are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distrobuted Activity Archive Center (DAAC).

Hall, Forrest G.↗
NASA NTRS2018

Influence of Load Profile on Biomechanics of the Squat and Deadlift

Long duration space travel will expose astronauts to extended periods of reduced gravity. Since gravity is not present to assist loading, astronauts will use resistive and aerobic exercise regimes for the duration of the space flight to counteract the effect reduced gravity has on the body. Astronauts will exercise on a flywheel based device on the second Orion Exploration Mission (EM2). The effect that the flywheel load profile has on biomechanics is unknown when compared to free weights or a simulated free weight profile. The purpose of this evaluation is to compare the differences in lower body kinematics and kinetics between the flywheel and free weight profile. Test subjects were instrumented with reflective markers for motion capture data collection while exercising on the Device for Aerobic and Resistive Training (DART) prototype developed by TDA Research, Inc. of Wheat Ridge, CO. Exercises performed were either the squat while wearing a harness or deadlift while grasping a T-bar, both of which interfaced with the DART through a rope cable. The DART, a motorized device controlled via software, is capable of producing different load profiles. Profiles include simulated free weights with adjustable eccentric overload capability and flywheel. Test variables included the applied device load and the load profile, both set through the DART software interface. Motion capture data was collected with a 12 camera system (Smart-DX, BTS Bioengineering, Brooklyn, NY). Bilateral ground reaction force data were collected with force plates (P6000, BTS Bioengineering). DART cable force was recorded through an internal load cell. Data was collected from a total of four test subjects. The three repetition maximum was determined for each test subject for both squat and deadlift. High, medium and low loads were determined based on this maximum. The test subject performed five repetitions of each exercise at each load and each test trial was repeated twice. Cadence was controlled during exercising. Biomechanical data were used to drive the models utilizing the OpenSim software platform. Subject specific models were scaled to match the anthropometrics of the test subjects and used to estimate the peak joint angle, joint range of motion, the peak joint moment and the joint moment impulse of the lower extremity joints and the lumbar joint.These are preliminary results because the data analysis is ongoing. There was a lot of inter-subject variability, however, in general, there was a greater peak lumbar flexion angle for the flywheel squat exercise. There was a trend towards a greater range of motion at the hip for the squat exercise with free weight. There was also a greater hip extension, lumbar extension and ankle plantar flexion impulse moment during the squat exercise with free weight. During the deadlift exercise, the peak knee flexion angle and peak knee extension moment were greater when using the free weight profile. For deadlift, the hip extension, lumbar extension and ankle plantar flexion impulse moment tended to be greater with the free weight profile. Overall, the kinematic and kinetic outcomes for the flywheel profile were either statistically the same as free weight profile in many cases, significantly reduced in a few cases, and rarely higher.

Bioengineering↗
NASA NTRS1993

Opening remarks: Current and future activities

It is our custom to present the Propagation Program's recent accomplishments and future plans at the onset of a NAPEX meeting. A summary is presented. The data analysis phase of the U.S. Olympus Campaign is nearing its end. The final report will be published by Virginia Tech by midsummer 1993. The report will comprise measurement analysis for 12 months. It will include monthly and annual attenuation statistics and statistics on scintillation effects. A number of prediction models will be presented. The ACTS propagation experiment preparations are moving forward as expected. The mobile/personal channel characterization efforts continued during the last year. Data collected by the University of Texas in 1992 are being analyzed and will become available by September 1993. We have recently started a study to characterize LEO mobile/personal channels. Topics such as indoor reception, tree shadowing, blockage, and delay spread will be investigated. These results will become available in one to two years from now. We have also collected Ka-band mobile data using Olympus 20 GHz beacon transmissions. The University of Texas has already collected five years of low-elevation angle, 11GHz propagation data. The work on database for propagation models has progressed very well. The first release is ready, and the participants of this meeting will receive a copy of the software. We had an active year where CCIR is concerned. An input document on land mobile satellite system (LMSS) propagation models was submitted to the U.S. national committee and was approved and sent to Geneva.

Davarian, Faramaz↗
NASA NTRS1979

Measurement of hurricane winds and waves with a synthetic aperture radar

An analysis of data collected in a hurricane research program is presented. The data were collected with a Synthetic Aperture Radar (SAR) during five aircraft flights in the Atlantic in August and September, 1976. Work was conducted in two areas. The first is an analysis of the L-band SAR data in a scatterometer mode to determine the surface windspeeds in hurricanes, in a similar manner to that done by an X-band scatterometer. The second area was to use the SAR to examine the wave patterns in hurricanes. The wave patterns in all of the storms are similar and show a marked radial asymmetry.

Shemdin, O. H.↗
NASA NTRS1993

Data management for support of the Oregon Transect Ecosystem Research (OTTER) project

Management of data collected during projects that involve large numbers of scientists is an often overlooked aspect of the experimental plan. Ecosystem science projects like the Oregon Transect Ecosystem Research (OTTER) Project that involve many investigators from many institutions and that run for multiple years, collect and archive large amounts of data. These data range in size from a few kilobytes of information for such measurements as canopy chemistry and meteorological variables, to hundreds of megabytes of information for such items as views from multi-band spectrometers flown on aircraft and scenes from imaging radiometers aboard satellites. Organizing and storing data from the OTTER Project, certifying those data, correcting errors in data sets, validating the data, and distributing those data to other OTTER investigators is a major undertaking. Using the National Aeronautics and Space Administration's (NASA) Pilot Land Data System (PLDS), a Support mechanism was established for the OTTER Project which accomplished all of the above. At the onset of the interaction between PLDS and OTTER, it was not certain that PLDS could accomplish these tasks in a manner that would aid researchers in the OTTER Project. This paper documents the data types that were collected under the auspices of the OTTER Project and the procedures implemented to store, catalog, validate, and certify those data. The issues of the compliance of investigators with data-management requirements, data use and certification, and the ease of retrieving data are discussed. We advance the hypothesis that formal data management is necessary in ecological investigations involving multiple investigators using many data gathering instruments and experimental procedures. The issues and experience gained in this exercise give an indication of the needs for data management systems that must be addressed in the coming decades when other large data-gathering endeavors are undertaken by the ecological science community.

Skiles, J. W.↗
NASA NTRS2009

HRP Data Accessibility Current Status

Overview of talk: a) Content of Human Life Science data; b) Data archive structure; c) Applicable legal documents and policies; and d) Methods for data access. Life Science Data Archive (LSDA) contains research data from NASA-funded experiments, primarily data from flight experiments and ground analog data collected at NASA facilities. Longitudinal Study of Astronaut Health (LSAH) contains electronic health records (medical data) of all astronauts, including mission data. Data are collected for clinical purposes. Clinical data are analyzed by LSAH epidemiologists to identify trends in crew health and implement changes in pre-, in-, or post-flight medical care.

Sams, Clarence↗
NASA NTRS2000

(BOREAS) BOREAS TE-7 Sap Flow Data

The BOREAS TE-7 team collected data sets in support of its efforts to characterize and interpret information on the sap flow of boreal vegetation. The heat pulse method was used to monitor sap flow and to estimate rates of transpiration from aspen, black spruce, and mixed wood forests at the SSAOA, MIX, SSA-OBS. and Batoche sites in Saskatchewan, Canada. Measurements were made at the various sites from May to October 1994, May to October 1995, and April to October 1996. A scaling procedure was used to estimate canopy transpiration rates from the sap flow measurements. The data were stored in tabular ASCII files. Analyses to date show a tendency for sap flow in aspen to remain remarkably constant over a wide range of environmental conditions VPD from 1.0 to 4.8 kPa and solar radiation less than 400 W/sq m). For forests with high aerodynamic conductance, the results would indicate an inverse relationship between stomatal conductance and VPD, for VPD greater than 1 kPa. A possible interpretation is that stomata are operating to maintain leaf water potentials above a critical minimum value, which in turn places a maximum value on the rate of sap flow that can be sustained by the tree. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distrobuted Activity Archive Center (DAAC).

Hall, Forrest G.↗
NASA NTRS2000

BOREAS TF-9 SSA-OBS Branch Level Flux Data

The BOREAS TF-9 team collected data that describe carbon dioxide and water vapor fluxes from foliage at the BOREAS SSA-OBS site from 07-April through 23-November-1996. The data are available in tabular ASCII files.

Rayment, Mark B.↗
NASA NTRS1993

Observation of pressure ridges in SAR images of sea ice: Scattering theory and comparison with observations

Ridges and keels (hummocks and bummocks) in sea ice flows are important in sea ice research for both scientific and practical reasons. Sea ice movement and deformation is driven by internal and external stresses on the ice. Ridges and keels play important roles in both cases because they determine the external wind and current stresses via drag coefficients. For example, the drag coefficient over sea ice can vary by a factor of several depending on the fluid mechanical roughness length of the surface. This roughness length is thought to be strongly dependent on the ridge structures present. Thus, variations in ridge and keel structure can cause gradients in external stresses which must be balanced by internal stresses and possibly fracture of the ice. Ridging in sea ice is also a sign of fracture. In a practical sense, large ridges form the biggest impediment to surface travel over the ice or penetration through sea ice by ice-strengthened ships. Ridges also play an important role in the damage caused by sea ice to off-shore structures. Hence, observation and measurement of sea ice ridges is an important component of sea ice remote sensing. The research reported here builds on previous work, estimating the characteristics of ridges and leads in sea ice from SAR images. Our objective is to develop methods for quantitative measurement of sea ice ridges from SAR images. To make further progress, in particular, to estimate ridge height, a scattering model for ridges is needed. Our research approach for a ridge scattering model begins with a survey of the geometrical properties of ridges and a comparison with the characteristics of the surrounding ice. For this purpose we have used airborne optical laser (AOL) data collected during the 1987 Greenland Sea Experiment. These data were used to generate a spatial wavenumber spectrum for height variance for a typical ridge - the typical ridge is the average over 10 large ridges. Our first-order model radar scattering includes both the quasi-specular and Bragg resonant scatter mechanisms. This model is extended to include contributions from volume scatter and scatter from discrete objects. Geometrical characteristics from the AOL survey and model calculations imply that for radar wavelengths and observation geometries that are dominated by the quasi-specular scattering mechanism radar backscatter from a ridge is a measure of peak ridge height. We present scattering model results and compare them with ridges observed during the LEADEX experiment of March-April 1992 when both X, C, and L-band aircraft SAR and the ERS-1 satellite SAR observed a region in the Beaufort Sea near 86 deg N, 10 deg W. Data were also collected documenting ridge characteristics on the surface. The surface data are used to generate a SAR signature via the scattering model described above. The predicted SAR signatures compare well with the SAR observations.

Vesecky, J. F.↗
NASA NTRS1972

Thermal contouring of forestry data: Wallops Island

The contouring of 8-13.5 micrometer thermal data collected over a forestry site in Virginia is described. The data were collected at an altitude of 1000 ft above terrain on November 4, 1970. The site was covered on three approximately parallel lines. The purpose of the contouring was to attempt to delineate pine trees attacked by southern pine bark beetle, and to map other important terrain categories. Special processing steps were required to achieve the correct aspect ratio of the thermal data. The reference for the correction procedure was color infrared photography. Data form and quality are given, processing steps are outlined, a brief interpretation of results is given, and conclusion are presented.

Thomson, F.↗
NASA NTRS2025

Subsonic Ultra Green Aircraft Research: Phase V – Buffet Test Report

This test report summarizes work performed by the Boeing Subsonic Ultra-Green Aircraft Research (SUGAR) team in the Phase V Transonic Truss-Braced Wing contract task. The task was awarded in September 2020, and ended at the end of September 2022. As a part of the SUGAR Phase V contract task, Boeing developed a wind tunnel test plan, model requirements, then fabricated and conducted a dedicated transonic buffet wind tunnel test. The test focused on the investigation of buffet onset, and the ability to accurately predict buffet onset for the TTBW configuration. This report summarizes the results and post-test analysis of the 9% scale, semispan, Transonic Truss-Braced Wing (TTBW) transonic buffet model tested at the NASA Ames Research Center Unitary Plan Wind Tunnel (UPWT) 11-Foot Transonic Wind Tunnel (11-Ft TWT) facility located at Moffett Field, CA. It was tested from January 24, 2022, through February 18, 2022. The wind tunnel test was successful in capturing buffet onset at the model design dynamic pressure. Multiple configurations were tested starting in the wing-body-strut configuration and ending with the full configuration including wing-body-strut-nacelle/pylon, and flap hinge. The test also measured the effect of control surface deflections (ailerons and spoilers), as well as the effect of an outboard strut flap. Steady data collected during the test included standard force and moment measurements, as well as wing, strut, nacelle, and body (fuselage) static pressures. These data were collected in a standard pitch-pause mode. Unsteady data captured in the test, collected in continuous pitch mode, included wing and strut dynamic pressures, accelerations, and strains. According to test data, previous concerns regarding critical buffet onset on the strut (at low vehicle lift coefficient) and in the wing-strut channel have been mitigated. Buffet onset on the TTBW appears to follow conventional wing-induced buffet onset mechanisms. However, the critical station where buffet onset first occurs has moved inboard to the wing-strut juncture span location (55-60% span) from the typical ~70% span location. Test data obtained by unsteady pressure transducers provided a good match to expected buffet onset modes. An assessment of different tools and methodologies for predicting buffet onset was conducted. Reasonable agreement was found for buffet boundary predictions between most of the methods examined when using a forward trip location, with the greatest discrepancies from the pitching moment break and trailing edge pressure divergence methods. When an aft trip location was used the buffet boundary predictions diverged more significantly from unsteady pressure measurements. In addition, good agreement between the buffet onset trends were found when the Reynolds number, configuration, or spanload was changed.

strut↗
NASA NTRS1994

Pen-based computers: Computers without keys

The National Space Transportation System (NSTS) is comprised of many diverse and highly complex systems incorporating the latest technologies. Data collection associated with ground processing of the various Space Shuttle system elements is extremely challenging due to the many separate processing locations where data is generated. This presents a significant problem when the timely collection, transfer, collation, and storage of data is required. This paper describes how new technology, referred to as Pen-Based computers, is being used to transform the data collection process at Kennedy Space Center (KSC). Pen-Based computers have streamlined procedures, increased data accuracy, and now provide more complete information than previous methods. The end results is the elimination of Shuttle processing delays associated with data deficiencies.

Conklin, Cheryl L.↗