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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 955 records · Page 53
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Structure-guided functional studies of plasmid-encoded dihydrofolate reductases reveal a common mechanism of trimethoprim resistance in Gram-negative pathogens

Two plasmid-encoded dihydrofolate reductase (DHFR) isoforms, DfrA1 and DfrA5, that give rise to high levels of resistance in Gram-negative bacteria were structurally and biochemically characterized to reveal the mechanism of TMP resistance and to support phylogenic groupings for drug development against antibiotic resistant pathogens. Preliminary screening of novel antifolates revealed related chemotypes that showed high levels of inhibitory potency against Escherichia coli chromosomal DHFR (EcDHFR), DfrA1, and DfrA5. Kinetics and biophysical analysis, coupled with crystal structures of trimethoprim bound to EcDHFR, DfrA1 and DfrA5, and two propargyl-linked antifolates (PLA) complexed with EcDHFR, DfrA1 and DfrA5, were determined to define structural features of the substrate binding pocket and guide synthesis of pan-DHFR inhibitors.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Cryo-EM confirms a common fibril fold in the heart of four patients with ATTRwt amyloidosis

ATTR amyloidosis results from the conversion of transthyretin into amyloid fibrils that deposit in tissues causing organ failure and death. This conversion is facilitated by mutations in ATTRv amyloidosis, or aging in ATTRwt amyloidosis. ATTRv amyloidosis exhibits extreme phenotypic variability, whereas ATTRwt amyloidosis presentation is consistent and predictable. Previously, we found unique structural variabilities in cardiac amyloid fibrils from polyneuropathic ATTRv-I84S patients. In contrast, cardiac fibrils from five genotypically different patients with cardiomyopathy or mixed phenotypes are structurally homogeneous. To understand fibril structure’s impact on phenotype, it is necessary to study the fibrils from multiple patients sharing genotype and phenotype. Here we show the cryo-electron microscopy structures of fibrils extracted from four cardiomyopathic ATTRwt amyloidosis patients. Our study confirms that they share identical conformations with minimal structural variability, consistent with their homogenous clinical presentation. Our study contributes to the understanding of ATTR amyloidosis biopathology and calls for further studies.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2013

Common processes drive the thermochemical pretreatment of lignocellulosic biomass

Lignocellulosic biomass, a potentially important renewable organic source of energy and chemical feedstock, resists degradation to glucose in industrial hydrolysis processes and thus requires expensive thermochemical pretreatments. Understanding the mechanism of biomass breakdown during these pretreatments will lead to more efficient use of biomass. By combining multiple probes of structure, sensitive to different length scales, with molecular dynamics simulations, we reveal two fundamental processes responsible for the morphological changes in biomass during steam explosion pretreatment: cellulose dehydration and lignin-hemicellulose phase separation. In conclusion, we further show that the basic driving forces are the same in other leading thermochemical pretreatments, such as dilute acid pretreatment and ammonia fiber expansion.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

All-day passive radiative cooling using common salts

An infrared transparent foam made from inexpensive salts was developed enabling sub-ambient cooling of underlying surfaces for a full 24 hour cycle. This work showcases how non-convetional materials may be used for passive day-time radiative cooling.

36 MATERIALS SCIENCE↗
DOE OSTI2025

Depolymerization of PET by common alkanolamines yields tunable monomers to expand the design space of 3D-printable, intrinsically self-healing polyamide-ionenes

Polyethylene terephthalate (PET), a ubiquitous thermoplastic used in textiles and packaging, is one of the primary contributors to plastic pollution. While PET is also one of the most recycled plastics, it has value as a rich source of chemical building blocks. When PET is depolymerized by amino alcohols (“alkanolamines”) such as monoethanolamine (MEA), terephthalamide-diol molecules are produced. In the presence of thionyl chloride (SOCl2), these diols are amenable to transformation to the corresponding dichloride monomers, which can then be polymerized via condensation methods (i.e., Menshutkin reaction) with bisimidazole compounds followed by ion-exchange to yield polyamide (PA)-ionenes with tailored structures. The PA-ionenes produced from these methods are intrinsically self-healing and possess thermal and mechanical properties which make them amenable to 3D printing. This study reports on synthetic methods and structure–property relationships in PA-ionenes that arise from the choice of molecular building blocks.

Bepari, Mousumi R. [Univ. of Alabama, Tuscaloosa, ↗
DOE OSTI2015

Common features of particle beams and x-rays generated in a low energy dense plasma focus device

Features of energetic charged particle beams and x-ray emission in a low energy (1–2 kJ) plasma focus (DPF) device are described and the possible mechanism are explained based on circuit analyses and energy balance in the DPF system. In particular, the resistance and the voltage across the plasma column are estimated to explain the mechanisms of the generation of particle beams and hard x-ray. The analysis shows that the total inductance of a DPF might have played a role for enhancement of the particle beams and x-ray emissions during the phase of anomalous resistance.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2015

Modular apparatus for electrostatic actuation of common atomic force microscope cantilevers

Piezoelectric actuation of atomic force microscope (AFM) cantilevers often suffers from spurious mechanical resonances in the loop between the signal driving the cantilever and the actual tip motion. These spurious resonances can reduce the accuracy of AFM measurements and in some cases completely obscure the cantilever response. To address these limitations, we developed a specialized AFM cantilever holder for electrostatic actuation of AFM cantilevers. The holder contains electrical contacts for the AFM cantilever chip, as well as an electrode (or electrodes) that may be precisely positioned with respect to the back of the cantilever. By controlling the voltages on the AFM cantilever and the actuation electrode(s), an electrostatic force is applied directly to the cantilever, providing a near-ideal transfer function from drive signal to tip motion. We demonstrate both static and dynamic actuations, achieved through the application of direct current and alternating current voltage schemes, respectively. As an example application, we explore contact resonance atomic force microscopy, which is a technique for measuring the mechanical properties of surfaces on the sub-micron length scale. Using multiple electrodes, we also show that the torsional resonances of the AFM cantilever may be excited electrostatically, opening the door for advanced dynamic lateral force measurements with improved accuracy and precision.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2016

Dynamics of the two-spin spin-boson model with a common bath

Dynamics of the two-spin spin-boson model in the presence of Ohmic and sub-Ohmic baths is investigated by employing a multitude of the Davydov D{sub 1} trial states, also known as the multi-D{sub 1} Ansatz. Its accuracy in dynamics simulations of the two-spin SBM is improved significantly over the single D{sub 1} Ansatz, especially in the weak to moderately strong coupling regime. Validity of the multi-D{sub 1} Ansatz for various coupling strengths is also systematically examined by making use of the deviation vector which quantifies how faithfully the trial state obeys the Schrödinger equation. The time evolution of population difference and entanglement has been studied for various initial conditions and coupling strengths. Careful comparisons are carried out between our approach and three other methods, i.e., the time-dependent numerical renormalization group (TD-NRG) approach, the Bloch-Redfield theory, and a method based on a variational master equation. For strong coupling, the multi-D{sub 1} trial state yields consistent results as the TD-NRG approach in the Ohmic regime while the two disagree in the sub-Ohmic regime, where the multi-D{sub 1} trial state is shown to be more accurate. For weak coupling, the multi-D{sub 1} trial state agrees with the two master-equation methods in the presence of both Ohmic and sub-Ohmic baths, but shows considerable differences with the TD-NRG approach in the presence of a sub-Ohmic bath, calling into question the validity of the TD-NRG results at long times in the literature.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2018

Comparison of single-ion molecular dynamics in common solvents

Laying a basis for molecularly specific theory for the mobilities of ions in solutions of practical interest, we report a broad survey of velocity autocorrelation functions (VACFs) of Li + and PF 6 - ions in water, ethylene carbonate, propylene carbonate, and acetonitrile solutions. We extract the memory function, γ(t), which characterizes the random forces governing the mobilities of ions. Here, we provide comparisons controlling for the effects of electrolyte concentration and ion-pairing, van der Waals attractive interactions, and solvent molecular characteristics. For the heavier ion (PF 6 - ), velocity relaxations are all similar: negative tail relaxations for the VACF and a clear second relaxation for γ(t), observed previously also for other molecular ions and with n-pentanol as the solvent. For the light Li + ion, short time-scale oscillatory behavior masks simple, longer time-scale relaxation of γ(t). But the corresponding analysis of the solventberg Li + (H 2 O) 4 does conform to the standard picture set by all the PF 6 - results.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2019

Commonly used FRET fluorophores promote collapse of an otherwise disordered protein

The dimensions that unfolded proteins, including intrinsically disordered proteins (IDPs), adopt in the absence of denaturant remain controversial. We developed an analysis procedure for small-angle X-ray scattering (SAXS) profiles and used it to demonstrate that even relatively hydrophobic IDPs remain nearly as expanded in water as they are in high denaturant concentrations. In contrast, as demonstrated here, most fluorescence resonance energy transfer (FRET) measurements have indicated that relatively hydrophobic IDPs contract significantly in the absence of denaturant. Here, we use two independent approaches to further explore this controversy. First, using SAXS we show that fluorophores employed in FRET can contribute to the observed discrepancy. Specifically, we find that addition of Alexa-488 to a normally expanded IDP causes contraction by an additional 15%, a value in reasonable accord with the contraction reported in FRET-based studies. Second, using our simulations and analysis procedure to accurately extract both the radius of gyration (R g ) and end-to-end distance (R ee ) from SAXS profiles, we tested the recent suggestion that FRET and SAXS results can be reconciled if the R g and R ee are “uncoupled” (i.e., no longer simply proportional), in contrast to the case for random walk homopolymers. We find, however, that even for unfolded proteins, these two measures of unfolded state dimensions remain proportional. Together, these results suggest that improved analysis procedures and a correction for significant, fluorophore-driven interactions are sufficient to reconcile prior SAXS and FRET studies, thus providing a unified picture of the nature of unfolded polypeptide chains in the absence of denaturant.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗