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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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DOE OSTI2015

Comparative analysis of secretomes from Ectomycorrhizal fungi with an emphasis on small-secreted proteins

Fungi are major players in the carbon cycle in forest ecosystems due to the wide range of interactions they have with plants either through soil degradation processes by litter decayers or biotrophic interactions with pathogenic and ectomycorrhizal symbionts. Secretion of fungal proteins mediates these interactions by allowing the fungus to interact with its environment and/or host. Ectomycorrhizal (ECM) symbiosis independently appeared several times throughout evolution and involves approximately 80% of trees. Despite extensive physiological studies on ECM symbionts, little is known about the composition and specificities of their secretomes. In this study, we used a bioinformatics pipeline to predict and analyze the secretomes of 49 fungal species, including 11 ECM fungi, wood and soil decayers and pathogenic fungi to tackle the following questions: (1) Are there differences between the secretomes of saprophytic and ECM fungi? (2) Are small-secreted proteins (SSPs) more abundant in biotrophic fungi than in saprophytic fungi? and (3) Are there SSPs shared between ECM, saprotrophic and pathogenic fungi? We showed that the number of predicted secreted proteins is similar in the surveyed species, independently of their lifestyle. The secretome from ECM fungi is characterized by a restricted number of secreted CAZymes, but their repertoires of secreted proteases and lipases are similar to those of saprotrophic fungi. Focusing on SSPs, we showed that the secretome of ECM fungi is enriched in SSPs compared with other species. Most of the SSPs are coded by orphan genes with no known PFAM domain or similarities to known sequences in databases. Finally, based on the clustering analysis, we identified shared- and lifestyle-specific SSPs between saprotrophic and ECM fungi. The presence of SSPs is not limited to fungi interacting with living plants as the genome of saprotrophic fungi also code for numerous SSPs. As a result, ECM fungi shared lifestyle-specific SSPs likely involved in symbiosis that are good candidates for further functional analyses.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

AlgaeOrtho, a bioinformatics tool for processing ortholog inference results in algae

Introduction: Microalgae constitute a prominent feedstock for producing biofuels and biochemicals by virtue of their prolific reproduction, high bioproduct accumulation, and the ability to grow in brackish and saline water. However, naturally occurring wild type algal strains are rarely optimal for industrial use; therefore, bioengineering of algae is necessary to generate superior performing strains that can address production challenges in industrial settings, particularly the bioenergy and bioproduct sectors. One of the crucial steps in this process is deciding on a bioengineering target: namely, which gene/protein to differentially express. These targets are often orthologs which are defined as genes/proteins originating from a common ancestor in divergent species. Although bioinformatics tools for the identification of protein orthologs already exist, processing the output from such tools is nontrivial, especially for a researcher with little or no bioinformatics experience. Methods: The present study introduces AlgaeOrtho, a user-friendly tool that builds upon the SonicParanoid orthology inference tool (based on an algorithm that identifies potential protein orthologs based on amino acid sequences) and the PhycoCosm database from JGI (Joint Genome Institute) to help researchers identify orthologs of their proteins of interest in multiple diverse algal species. Results: The output of this application includes a table of the putative orthologs of their protein of interest, a heatmap showing sequence similarity (%), and an unrooted tree of the putative protein orthologs. Notably, the tool would be instrumental in identifying novel bioengineering targets in different algal strains, including targets in not-fully annotated algal species, since it does not depend on existing protein annotations. We tested AlgaeOrtho using three case studies, for which orthologs of proteins relevant to bioengineering targets, were identified from diverse algal species, demonstrating its ease of use and utility for bioengineering researchers. Discussion: This tool is unique in the protein ortholog identification space as it can visualize putative orthologs, as desired by the user, across several algal species.

09 BIOMASS FUELS↗

DOE OSTI2016

Cognitive Model of Trust Dynamics Predicts Human Behavior within and between Two Games of Strategic Interaction with Computerized Confederate Agents

When playing games of strategic interaction, such as iterated Prisoner’s Dilemma and iterated Chicken Game, people exhibit specific within-game learning (e.g., learning a game’s optimal outcome) as well as transfer of learning between games (e.g., a game’s optimal outcome occurring at a higher proportion when played after another game). The reciprocal trust players develop during the first game is thought to mediate transfer of learning effects. Recently, a computational cognitive model using a novel trust mechanism has been shown to account for human behavior in both games, including the transfer between games. We present the results of a study in which we evaluate the model’s a priori predictions of human learning and transfer in 16 different conditions. The model’s predictive validity is compared against five model variants that lacked a trust mechanism. The results suggest that a trust mechanism is necessary to explain human behavior across multiple conditions, even when a human plays against a non-human agent. The addition of a trust mechanism to the other learning mechanisms within the cognitive architecture, such as sequence learning, instance-based learning, and utility learning, leads to better prediction of the empirical data. It is argued that computational cognitive modeling is a useful tool for studying trust development, calibration, and repair.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Engineering-Scale Integrated Energy System Data Projection Demonstration via the Dynamic Energy Transport and Integration Laboratory

The objective of this study is to demonstrate and validate the Dynamic Energy Transport and Integration Laboratory (DETAIL) preliminary scaling analysis using Modelica language system-code Dymola. The DETAIL preliminary scaling analysis includes a multisystem integral scaling package between thermal-storage and hydrogen-electrolysis systems. To construct the system of scaled equations, dynamical system scaling (DSS) was applied to all governing laws and closure relations associated with the selected integral system. The existing Dymola thermal-energy distribution system (TEDS) facility and high-temperature steam electrolysis (HTSE) facility models in the Idaho National Laboratory HYBRID repository were used to simulate a test case and a corresponding scaled case for integrated system HYBRID demonstration and validation. The DSS projected data based on the test-case simulations and determined scaling ratios were generated and compared with scaled case simulations. The preliminary scaling analysis performance was evaluated, and scaling distortions were investigated based on data magnitude, sequence, and similarity. The results indicated a necessity to change the normalization method for thermal storage generating optimal operating conditions of 261 kW power and mass flow rate of 6.42 kg/s and the possibility of reselecting governing laws for hydrogen electrolysis to improve scaling predictive properties. To enhance system-scaling similarity for TEDS and HTSE, the requirement for scaling validation via physical-facility demonstration was identified.

08 HYDROGEN↗

DOE OSTI2025

Specific Bacterial Taxa and Their Metabolite, DHPS, May Be Linked to Gut Dyshomeostasis in Patients with Alzheimer’s Disease, Parkinson’s Disease, and Amyotrophic Lateral Sclerosis

Background: Neurodegenerative diseases (NDDs) are multifactorial disorders frequently associated with gut dysbiosis, oxidative stress, and inflammation; however, the pathophysiological mechanisms remain poorly understood. Methods: Using untargeted mass spectrometry-based metabolomics and 16S sequencing of human stool, we investigated bacterial and metabolic dyshomeostasis in the gut microbiome associated with early disease stages across three NDDs—amyotrophic lateral sclerosis (ALS), Alzheimer’s disease (AD), Parkinson’s disease (PD)—and healthy controls (HC). Results: We discovered a previously unrecognized link between a microbial-derived metabolite with an unknown role in human physiology, 2,3-dihydroxypropane-1-sulfonate (DHPS), and gut dysbiosis in NDDs. DHPS was downregulated in AD, ALS, and PD, while bacteria involved in DHPS metabolism, Eubacterium and Desulfovibrio, were increased in all disease cohorts. Additionally, select taxa within the Clostridia class had strong negative correlations to DHPS, suggesting a potential role in DHPS metabolism. A catabolic product of DHPS is hydrogen sulfide, and when in excess, it is known to promote inflammation, oxidative stress, mitochondrial damage, and gut dysbiosis, known hallmarks of NDDs. Conclusions: These findings suggest that cryptic sulfur metabolism via DHPS is a potential missing link in our current understanding of gut dysbiosis associated with NDD onset and progression. As this was a hypothesis generating study, more work is needed to elucidate the role of DHPS in gut dysbiosis and neurodegenerative diseases.

Nutrition & Dietetics↗

NASA NTRS1971

Data compression system

A data compression system is described in which TV PCM data for each line scan is received in the form of a succession of multibit pixel words. All or selected bits of each word are compressed by providing difference values between successive pixel words and coding the difference values of a selected number of pixel words forming a block into a fundamental sequence (FS). The FS, based on its length and the number of words per block, is either transmitted as the compressed data or is used to generate a code FS or its complement is used to generate a code FS bar. When the code FS is generated, its length is compared with the original block PCM and only if the former is the shorter of the two is the code transmitted. Selected bits per pixel word may be compressed, while the remaining bits may be transmitted directly, or some of them may be omitted altogether.

Rice, R. F.↗

NASA NTRS1971

A class of orthogonal nonrecursive binomial filters.

The time- and frequency-domain properties of the orthogonal binomial sequences are presented. It is shown that these sequences, or digital filters based on them, can be generated using adders and delay elements only. The frequency-domain behavior of these nonrecursive binomial filters suggests a number of applications as low-pass Gaussian filters or as inexpensive bandpass filters.

Haddad, R. A.↗

NASA NTRS1973

Solution of quadratic matrix equations for free vibration analysis of structures.

An efficient digital computer procedure and the related numerical algorithm are presented herein for the solution of quadratic matrix equations associated with free vibration analysis of structures. Such a procedure enables accurate and economical analysis of natural frequencies and associated modes of discretized structures. The numerically stable algorithm is based on the Sturm sequence method, which fully exploits the banded form of associated stiffness and mass matrices. The related computer program written in FORTRAN V for the JPL UNIVAC 1108 computer proves to be substantially more accurate and economical than other existing procedures of such analysis. Numerical examples are presented for two structures - a cantilever beam and a semicircular arch.

Gupta, K. K.↗

NASA NTRS1973

Recent advances in numerical analysis of structural eigenvalue problems

A wide range of eigenvalue problems encountered in practical structural engineering analyses is defined, in which the structures are assumed to be discretized by any suitable technique such as the finite-element method. A review of the usual numerical procedures for the solution of such eigenvalue problems is presented and is followed by an extensive account of recently developed eigenproblem solution procedures. Particular emphasis is placed on the new numerical algorithms and associated computer programs based on the Sturm sequence method. Eigenvalue algorithms developed for efficient solution of natural frequency and buckling problems of structures are presented, as well as some eigenvalue procedures formulated in connection with the solution of quadratic matrix equations associated with free vibration analysis of structures. A new algorithm is described for natural frequency analysis of damped structural systems.

Gupta, K. K.↗

NASA NTRS1975

Alkyl substituted cyclic ethers in 2,300 M yr old Transvaal algal stromatolite

Two cyclic ethers have been identified for the first time from insoluble polymer-like kerogen in a Precambrian rock by ozonolysis, gas chromatography, and mass spectrometry. The ethers are 2-n-propyl-3-methyltetrahydrofuran and 2-n-propyltetrahydropyran. These compounds could prove to be the oldest indigenous biochemical fossils. The sample was obtained 750 m stratigraphically above the base of the Transvaal Sequence from an outcrop approximately 315 km north-east of Johannesburg, South Africa.

Zumberge, J. E.↗

NASA NTRS1986

Digital Pseudonoise Generator

Architecture developed for noise generator based on pseudorandom number sequence. Concept involves no additions or multiplications; outputs of set of feedback shift registers combined, bit-by-bit, in accordance with desired probability distribution. Digital, pseudorandom number output fed to digital-to-analog converter to generate pseudonoise signal suitable for testing broadband amplifiers.

Knoebel, A.↗

NASA NTRS1985

A retransmission protocol for the message service of a land mobile satellite experiment

The objectives of NASA's land mobile satellite experiments are discussed. The assigned multiple access protocol combined with a retransmission scheme is to provide reliable transmission of data messages from mobiles to base stations (BSs). The sequences for communication between mobiles and BSs, mobiles and the network management center (NMC), and BSs and NMC are examined, and an example of mobiles/BSs communication is provided. The performance of the retransmission protocol and data message reservation and message channels delays are analyzed. A bit error rate of 0.001 is observed for satellite channels in a mobile environment and the message error probability is between 0-0.1.

Yan, T.-Y.↗

NASA NTRS1987

Implications of isotopic signatures of noble gases for the origin and evolution of terrestrial atmospheres

It is contented that the initial quantities of noble gases present in planetesimals were controlled by the sizes and masses of the planets, and fit with a model of successive accretion. The successive accretion model proposed for the origin of terrestrial planets is based upon: (1) the sequence of zones of condensation of solar nebula, (2) the condensation sequence of minerals, iron and nickel in different P-T regimes of the solar nebula, and (3) the sequence in the nucleation of iron cores of the terrestrial planets.

Rao, A. S. P.↗

NASA NTRS1988

Future civil space program logistics

The NASA Shuttle-C unmanned launch vehicle and the Shuttle/Space Station-based Orbital Maneuver Vehicle will be used in support of NASA Space Station assembly and logistics operations, as well as for the orbital servicing of the Hubble Space Telescope (1989), the Advanced X-ray Astrophysical Facility (1996), and the Space Infrared Telescope Facility (1998). Accounts are presently given of these observatories' configurations, capabilities, and mission scenarios, as well as of the Shuttle-C-based Space Station assembly sequence.

Steincamp, James W.↗

NASA NTRS1991

The Kinematics of Turbulent Boundary Layer Structure

The long history of research into the internal structure of turbulent boundary layers has not provided a unified picture of the physics responsible for turbulence production and dissipation. The goals of the present research are to: (1) define the current state of boundary layer structure knowledge; and (2) utilize direct numerical simulation results to help close the unresolved issues identified in part A and to unify the fragmented knowledge of various coherent motions into a consistent kinematic model of boundary layer structure. The results of the current study show that all classes of coherent motion in the low Reynolds number turbulent boundary layer may be related to vortical structures, but that no single form of vortex is representative of the wide variety of vortical structures observed. In particular, ejection and sweep motions, as well as entrainment from the free-streem are shown to have strong spatial and temporal relationships with vortical structures. Disturbances of vortex size, location, and intensity show that quasi-streamwise vortices dominate the buffer region, while transverse vortices and vortical arches dominate the wake region. Both types of vortical structure are common in the log region. The interrelationships between the various structures and the population distributions of vortices are combined into a conceptual kinematic model for the boundary layer. Aspects of vortical structure dynamics are also postulated, based on time-sequence animations of the numerically simulated flow.

Robinson, Stephen Kern↗

NASA NTRS1991

Space architecture monograph series. Volume 4: Genesis 2: Advanced lunar outpost

This research and design study investigated advanced lunar habitats for astronauts and mission specialists on the Earth's moon. Design recommendations are based on environmental response to the lunar environment, human habitability (human factors and environmental behavior research), transportability (structural and materials system with least mass), constructability (minimizing extravehicular time), construction dependability and resilience, and suitability for NASA launch research missions in the 21st century. The recommended design uses lunar lava tubes, with construction being a combination of Space Station Freedom derived hard modules and light weight Kevlar laminate inflatable structures. The proposed habitat includes research labs and a biotron, crew quarters and crew support facility, mission control, health maintenance facility, maintenance work areas for psychological retreat, privacy, and comtemplation. Furniture, specialized equipment, and lighting are included in the analysis and design. Drawings include base master plans, construction sequencing, overall architectural configuration, detailed floor plans, sections and axonometrics, with interior perspectives.

Fieber, Joseph P.↗

NASA NTRS1992

Relative timing of substorm features in MHD simulations

An investigation of the temporal sequence of substorm phenomena based on three dimensional MHD (magnetohydrodynamic) simulations of magnetic reconnection and plasmoid formation is presented. The investigation utilizes a spatially localized resistivity model which leads to a significantly faster evolution than found in previous investigations. The analysis of the results concentrates on substorm features that have received considerable attention in the past. The formation of magnetic neutral lines, the occurrence of fast flows directed both earthward and tailward, and the magnetic field changes leading to the formation of the substorm current wedge, and to the depolarization of the magnetic field earthward of the reconnection region and its dependence on the spatial distribution of resistivity, are discussed. These phenomena are seen as an integral part of the nonlinear evolution of the three dimensional tearing instability.

Hesse, Michael↗

NASA NTRS1998

The Hadean, Through a Glass Telescopically: Observations of Young Solar Analogs

Investigations into the Earth's surface environment during the Hadean eon (prior to 3.8 Ga) are hampered by the paucity of the geological and geochemical record and the relative inaccessibility of better-preserved surfaces with possibly similar early histories (i.e., Mars). One approach is to observe nearby, young solar-mass stars as analogs to the Hadean Sun and its environment. A catalog of 38 G and early K stars within 25 pc was constructed based on main-sequence status, bolometric luminosity, lack of known stellar companions within 800 AU, and coronal X-ray luminosities commensurate with the higher activity of solar-mass stars <0.8 b.y. old. Spectroscopic data support the assignment of ages of 0.2 - 0.8 Ga for most of these stars. Observations of these objects will provide insight into external forces that influenced Hadean atmosphere, ocean, and surface evolution (and potential ecosystems), including solar luminosity evolution, the flux and spectrum of solar ultraviolet radiation, the intensity of the solar wind, and the intensity and duration of a late period of heavy bombardment. The standard model of solar evolution predicts a luminosity of 0.75 solar luminosity at the end of the Hadean, implying a terrestrial surface temperature inconsistent with the presence of liquid water and motivating atmospheric greenhouse models. An alternative model fo solar evolution that invokes mass loss, constructed to explain solar Li depletion, attenuates or reverses this luminosity evolution of the atmospheres of Earth and the other terrestrial planets. This model can be tested by Li abundance measurements. The continuum emission from stellar wind plasma during significant mass loss may be detectable at millimeter and radio wavelengths. The Earth (and Moon) experienced a period of intense bombardment prior to 3.8 Ga, long after accretion was completed in the inner solar system and possibly associated with the clearing of residual planetesimals in the outer solar system. Such a bombardment may have contributed volatiles and organics to the surface, but also have limited the appearacne of a biosphere. While planetary systems around solar systems cannot be detected directly with present technology, the thermal emission from the interplanetary dust generated during a similar heavy bombardment period can be. Midinfrared observations of a large uniform sample of solar analogs are used to constrain the frequency and duration of such events.

Gaidos, E. J.↗