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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 955 records · Page 53
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Modular protein-oligonucleotide signal exchange

Abstract While many methods are available to measure the concentrations of proteins in solution, the development of a method to quantitatively report both increases and decreases in different protein concentrations in real-time using changes in the concentrations of other molecules, such as DNA outputs, has remained a challenge. Here, we present a biomolecular reaction process that reports the concentration of an input protein in situ as the concentration of an output DNA oligonucleotide strand. This method uses DNA oligonucleotide aptamers that bind either to a specific protein selectively or to a complementary DNA oligonucleotide reversibly using toehold-mediated DNA strand-displacement. It is possible to choose the sequence of output strand almost independent of the sensing protein. Using this strategy, we implemented four different exchange processes to report the concentrations of clinically relevant human α-thrombin and vascular endothelial growth factor using changes in concentrations of DNA oligonucleotide outputs. These exchange processes can operate in tandem such that the same or different output signals can indicate changes in concentration of distinct or identical input proteins. The simplicity of our approach suggests a pathway to build devices that can direct diverse output responses in response to changes in concentrations of specific proteins.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Fungal organic acid uptake of mineral-derived K is dependent on distance from carbon hotspot

Fungal mineral weathering regulates the bioavailability of inorganic nutrients from mineral surfaces to organic matter and increase the bioavailable fraction of nutrients. Such weathering strategies are classified as biomechanical or biochemical. In the case of fungal uptake of mineral nutrients through biochemical weathering, it is widely hypothesized that uptake of inorganic nutrients occurs through organic acid chelation, but such processes have not been directly visualized. This is in part due to challenges in probing the complex and heterogeneous soil environment. Here, using an epoxy-based, mineral-doped soil micromodel platform, which emulates soil mineralogy and porosity, we visualize the molecular mechanisms of mineral weathering. Mass spectrometry imaging revealed differences in the distribution of fungal exudates, citric acid, and tartaric acid on the soil micromodels in presence of minerals. Citric acid was detected closer to the nutrient-rich inoculation point, whereas tartaric acid was highly abundant away from inoculation point. This suggested that the organic acid exuded by the fungi depended on the proximity from the carbon-rich organic substrate at the point of inoculation. Using a combination of X-ray fluorescence and X-ray near edge structure analysis, we identified citric acid- and tartaric acid-bound K within fungal hyphae networks grown in the presence of minerals. Combined, our results provide direct evidence that fungi uptake and transport mineral derived nutrient organic acid chelation. The results of this study provided unprecedented visualization of fungal uptake and transport of K + , while resolving the indirect weathering mechanism of fungal K uptake from mineral interfaces.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Discovering the Molecular Determinants of Phaeobacter inhibens Susceptibility to Phaeobacter Phage MD18

Bacteriophages are useful nonantibiotic therapeutics for bacterial infections as well as threats to industries utilizing bacterial agents. This study identified Phaeobacter virus MD18 , a phage antagonist of Phaeobacter inhibens , a bacterium with promising use as a probiotic for aquatic farming industries. Genomic analysis suggested that Phaeobacter phage MD18 has evolved to enhance its replication in P. inhibens by adopting favorable tRNA genes as well as through genomic sequence adaptation to resemble host codon usage. Lastly, a high-throughput analysis of P. inhibens transposon insertion mutants identified genes that modulate host susceptibility to phage MD18 and implicated the type IV pilus as the likely receptor recognized for adsorption. This study marks the first characterization of the relationship between P. inhibens and an environmentally sampled phage, which informs our understanding of natural threats to the bacterium and may promote the development of novel phage technologies for genetic manipulation of this host.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Ectomycorrhizal fungi alter soil food webs and the functional potential of bacterial communities

Most of Earth’s trees rely on critical soil nutrients that ectomycorrhizal fungi (EcMF) liberate and provide, and all of Earth’s land plants associate with bacteria that help them survive in nature. Yet, our understanding of how the presence of EcMF modifies soil bacterial communities, soil food webs, and root chemistry requires direct experimental evidence to comprehend the effects that EcMF may generate in the belowground plant microbiome. To this end, we grew Pinus muricata plants in soils that were either inoculated with EcMF and native forest bacterial communities or only native bacterial communities. We then profiled the soil bacterial communities, applied metabolomics and lipidomics, and linked omics data sets to understand how the presence of EcMF modifies belowground biogeochemistry, bacterial community structure, and their functional potential. We found that the presence of EcMF (i) enriches soil bacteria linked to enhanced plant growth in nature, (ii) alters the quantity and composition of lipid and non-lipid soil metabolites, and (iii) modifies plant root chemistry toward pathogen suppression, enzymatic conservation, and reactive oxygen species scavenging. Using this multi-omic approach, we therefore show that this widespread fungal symbiosis may be a common factor for structuring soil food webs.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Fungal Hyphosphere Microbiomes Are Distinct from Surrounding Substrates and Show Consistent Association Patterns

Fungi and bacteria are the most abundant and diverse organisms in soils (perhaps more so than any other habitat on earth), and together these microorganisms contribute to broad soil ecosystem processes. There is a suite of bacteria that appears consistently within the physical space called the hyphosphere, the area of influence surrounding fungal hyphae.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2011

Gyrokinetic Particle Simulation of Turbulent Transport in Burning Plasmas

In this project, we have developed techniques for visualizing large-scale time-varying multivariate particle and field data produced by the GPS_TTBP team. Our basic approach to particle data visualization is to provide the user with an intuitive interactive interface for exploring the data. We have designed a multivariate filtering interface for scientists to effortlessly isolate those particles of interest for revealing structures in densely packed particles as well as the temporal behaviors of selected particles. With such a visualization system, scientists on the GPS-TTBP project can validate known relationships and temporal trends, and possibly gain new insights in their simulations. We have tested the system using over several millions of particles on a single PC. We will also need to address the scalability of the system to handle billions of particles using a cluster of PCs. To visualize the field data, we choose to use direct volume rendering. Because the data provided by PPPL is on a curvilinear mesh, several processing steps have to be taken. The mesh is curvilinear in nature, following the shape of a deformed torus. Additionally, in order to properly interpolate between the given slices we cannot use simple linear interpolation in Cartesian space but instead have to interpolate along the magnetic field lines given to us by the scientists. With these limitations, building a system that can provide an accurate visualization of the dataset is quite a challenge to overcome. In the end we use a combination of deformation methods such as deformation textures in order to fit a normal torus into their deformed torus, allowing us to store the data in toroidal coordinates in order to take advantage of modern GPUs to perform the interpolation along the field lines for us. The resulting new rendering capability produces visualizations at a quality and detail level previously not available to the scientists at the PPPL. In summary, in this project we have successfully created new capabilities for the scientists to visualize their 3D data at higher accuracy and quality, enhancing their ability to evaluate the simulations and understand the modeled phenomena.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2025

Position Papers for Inverse Methods for Complex Systems under Uncertainty Workshop

The ability to solve inverse problems – inferring unknown parameters, structures, or states of a system from observed data – is essential for advancing scientific discovery and innovation capabilities for the DOE mission. Basic research needs and challenges are particularly acute in emerging areas such as the interactive, data-driven, modeling and simulation of digital twins; decision support for experiments at DOE scientific user facilities; and for other complex systems and workflows. Inverse problems are at the heart of understanding and controlling complex systems due to factors such as observational data with varying modalities and fidelities, inherent uncertainties in physical measurements and numerical models, and the computational demands of rapid and high-fidelity simulations. The convergence of recent scientific computing trends – scientific machine learning, artificial intelligence, and computing advances such as exascale computing – is creating unprecedented opportunities. These advancements offer the potential to revolutionize how we approach inverse problems to extract actionable insights with the required level of accuracy and computational efficiency. This workshop and the Call for Position Papers are vital steps in bringing together experts to collectively explore and identify the new computational and mathematical directions needed in inverse methods for complex systems under uncertainty.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2013

Community Structure and Function of High-Temperature Chlorophototrophic Microbial Mats Inhabiting Diverse Geothermal Environments

Six phototrophic microbial mat communities from different geothermal springs (YNP) were studied using metagenome sequencing and geochemical analyses. The primary goals of this work were to determine differences in community composition of high-temperature phototrophic mats distributed across the Yellowstone geothermal ecosystem, and to identify metabolic attributes of predominant organisms present in these communities that may correlate with environmental attributes important in niche differentiation. Random shotgun metagenome sequences from six phototrophic communities (average ~53 Mbp/site) were subjected to multiple taxonomic, phylogenetic, and functional analyses. All methods, including G + C content distribution, MEGAN analyses, and oligonucleotide frequency based clustering, provided strong support for the dominant community members present in each site. Cyanobacteria were only observed in non-sulfidic sites; de novo assemblies were obtained for Synechococcus-like populations at Chocolate Pots (CP_7) and Fischerella-like populations at White Creek (WC_6). Chloroflexi-like sequences (esp. Roseiflexus and/or Chloroflexus spp.) were observed in all six samples and contained genes involved in bacteriochlorophyll biosynthesis and the 3-hydroxypropionate carbon fixation pathway. Other major sequence assemblies were obtained for a Chlorobiales population from CP_7 (proposed family Thermochlorobacteriaceae), and an anoxygenic, sulfur-oxidizing Thermochromatium-like (Gamma-proteobacteria) population from Bath Lake Vista Annex (BLVA_20). Additional sequence coverage is necessary to establish more complete assemblies of other novel bacteria in these sites (e.g., Bacteroidetes and Firmicutes); however, current assemblies suggested that several of these organisms play important roles in heterotrophic and fermentative metabolisms. Definitive linkages were established between several of the dominant phylotypes present in these habitats and important functional processes such as photosynthesis, carbon fixation, sulfur oxidation, and fermentation.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1972

A study and classification of non-linear high frequency ionospheric instabilities by coupled mode theory.

Two basic high-frequency ionospheric instabilities are discussed - i.e., the three-wave parametric interaction, and the oscillating two-stream instability. In the parametric instability, the ion-acoustic wave has a complex frequency, whereas in the oscillating two-stream instability the ion-acoustic frequency is purely imaginary. The parametric instability is shown to be the only one whose threshold depends on the ion collision frequency. A coupled-mode theory is proposed which permits study and classification of high-frequency instabilities on a unified basis.

Harker, K. J.↗
NASA NTRS1973

Photoheliograph thermal concepts study. Volume 2: Detailed analysis

The photoheliograph thermal concepts study which was to define and compare the performance of thermal subsystem concepts for each of three photoheliograph designs oriented toward unique solar observation missions is reported. These design and missions are categorized as: (1) A 150-centimeter photoheliograph for large solar observatory (LSO) missions. This design is intended for multiyear orbital operations as a part of a complement of solar telescopes in a free-flying LSO configuration. (2) A 100-centimeter photoheliograph for shuttle sorties. This design is intended for observation periods of up to 2 weeks while mounted in the cargo bay of the shuttle orbiter vehicle. (3) A 100-centimeter photoheliograph for balloon missions. This design is intended to be a design verification unit and precursor to the orbital flight designs. Mission duration is on the order of a single day at an altitude of approximately 24.4 kilometers. For each of these photoheliograph designs, the basic thermal environments, boundary conditions, and applicable thermal control concepts were defined and the interactions between concepts and environments were determined. A baseline thermal control concept was selected for the three classes of photoheliographs described.

Source record↗
NASA NTRS1987

Graph-Plotting Routine

Plotter routine for IBM PC (AKPLOT) designed for engineers and scientists who use graphs as integral parts of their documentation. Allows user to generate graph and edit its appearance on cathode-ray tube. Graph may undergo many interactive alterations before finally dumped from screen to be plotted by printer. Written in BASIC.

Kantak, Anil V.↗
NASA NTRS1988

Theory on the uncertainty in cloud microphysical processes and climate

The interactive role of clouds and precipitation processes in a climate model is investigated. The basic model structure and parameterizations for condensation, evaporation, and precipitation are outlined. Results simulated from the cloud-climate model are discussed. The potential link between microphysical cloud processes and climate is theorized. The need to develop a climatology of the mean particle radius for clouds at the global scale, in order to understand the role of clouds in climate is stressed.

Liou, Kuo-Nan↗
NASA NTRS1992

Formation of auroral arcs via magnetosphere-ionosphere coupling

The aurora results from electrons that first are energized at very high altitudes by the solar wind-earth interactions and then travel down magnetic field lines until they hit the atmosphere. The basic physical processes are described that lead to the energization of these electrons and thus to the aurora.

Lyons, L. R.↗
NASA NTRS1994

A new ejecta shell surrounding a Wolf-Rayet star in the LMC

We have obtained CCD spectra of newly discovered shell-like nebulae around the WN4 star Breysacher 13 and the WN1 star Breysacher 2 in the Large Magellanic Cloud (LMC). The shell around Br 13 shows definite signs of enrichment in both nitrogen and helium, having much stronger (N II) and He I emission lines than are seen in typical LMC H II regions. From the measured electron temperature of about 17,000 K in the shell, we derive He/H and N/O abundance ratios which are factors of 2 and more than 10 higher, respectively, than the average LMC interstellar values. The derived oxygen abundance in the Br 13 shell is down by a factor of 8 compared to the local LMC interstellar medium (ISM); however, the derived electron temperature is affected by the presence of an incomplete shock arising from the interaction of the stellar wind with photoionized material. This uncertainty does not affect the basic conclusion that the Br 13 shell is enriched by processed material from the Wolf-Rayet star. In contrast, the shell around Br 2 shows no clear evidence of enrichment. The nebular spectrum is characterized by extremely strong (O III) and He II emission and very weak (N II). We derive normal He, O, and N abundances from our spectrum. This object therefore appears to be simply a wind-blown structure associated with a relatively dense cloud near the Wolf-Rayet star, although the very high-ionization state of the gas is unusual for a nebula associated with a Wolf-Rayet star.

Garnett, Donald R.↗
NASA NTRS1999

Technology and Advanced Development for a Non-Toxic Orbital Maneuvering System and Reaction Control System for Orbiter Upgrade

NASA intends to pursue technology applications to upgrade the Space Shuttle Orbiter OMS and RCS systems with non-toxic propellants. The primary objectives of an upgraded OMS/RCS are improved safety and reliability, reduced operations and maintenance costs while meeting basic OMS/RCS operational and performance requirements. The OMS/RCS has a high degree of direct interaction with the crew and requires subsystem and components that are compatible with integration into the orbiter vehicle with regard to external mold-line, power and thermal control The non-toxic propulsion technology is also applicable to future Human Exploration and Development of Space (HEDS) missions. The HEDS missions have similar requirements for attitude control and lander descent/ascent propulsion and which will emphasize the use of In-Situ Resource for propellants. When used as a regenerative coolant as in the Shuttle Orbiter OMS combustion chamber, non-toxic fuels such as ethanol are limited in their cooling capacity by the bulk temperature rise permitted to prevent film boiling or possible coking. Typical regeneratively cooled chambers are constructed from highly conductive copper, which maximizes heat transfer, or from low conductivity materials like stainless steel that can also exacerbate cooling problems. For an ethanol cooled application the heat transfer into the fluid must be controlled to reduce the fuel coolant bulk temperature rise. An approach to provide this control is the subject of this report. This report is being issued to document work done by Aerojet on NASA contract NAS 8-98042. Specifically, this project investigates of the use of ethanol, a designated non-toxic fuel, as a coolant for the Space Shuttle Orbital Maneuvering System Engine combustion chamber. The project also addresses a cost reducing fabrication technique for construction of such a combustion chamber. The study contained three major sub-tasks: an analytical investigation and trade study which included layout of a flight type chamber concept, the fabrication and evaluation of formed platelet liner panels and the preparation and testing of mechanical properties specimens representative of a novel hot gas wall concept.

Hayes, W. A.↗