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At least 937 records · Page 52

Exploring soybean metabolic pathways based on probabilistic graphical model and knowledge-based methods

Soybean (Glycine max) is a major source of vegetable oil and protein for both animal and human consumption. The completion of soybean genome sequence led to a number of transcriptomic studies (RNA-seq), which provide a resource for gene discovery and functional analysis. Several data-driven (e.g., based on gene expression data) and knowledge-based (e.g., predictions of molecular interactions) methods have been proposed and implemented. In order to better understand gene relationships and protein interactions, we applied probabilistic graphical methods, based on Bayesian network and knowledgebase constraints using gene expression data to reconstruct soybean metabolic pathways. The results show that this method can predict new relationships between genes, improving on traditional reference pathway maps.

54 ENVIRONMENTAL SCIENCES↗

Roadmap to MaRIE March 2015

Los Alamos National Laboratory’s proposed MaRIE facility is slated to introduce the world’s highest energy hard x-ray free electron laser (XFEL). As the light source for the Matter-Radiation Interactions in Extremes experimental facility (MaRIE), the 42-keV XFEL, with bursts of x-ray pulses at gigahertz repetition for studying fast dynamical processes, will help accelerate discovery and design of the advanced materials needed to meet 21st-century national security and energy security challenges. Yet the science of free-electron lasers has a long and distinguished history at Los Alamos National Laboratory (LANL), where for nearly four decades Los Alamos scientists have been performing research, design, development, and collaboration work in FEL science. The work at Los Alamos has evolved from low-gain amplifier and oscillator FEL development to highbrightness photoinjector development, and later, self-amplified spontaneous emission (SASE) and high-gain amplifier FEL development.

36 MATERIALS SCIENCE↗

LCLS-II High Energy (LCLS-II-HE): A transformative X-ray laser for science

LCLS-II-HE at SLAC will be a transformative X-ray tool for the scientific mission of DOE Basic Energy Sciences (BES) and for the nation. It represents the vital next step in the ongoing revolution in X-ray lasers, triggered by the world’s first demonstration of a hard X-ray free-electron laser (XFEL) by LCLS in 2009. Its capability moves far beyond the present generation of XFELs and the ultimate potential of storage rings, firmly maintaining the U.S. as the international leader in the science enabled by X-ray sources. The unmatched performance of this facility will serve the needs of a broad scientific user community focused on some of the most critical challenges facing our society, while providing extraordinary potential for scientific discovery and attracting the best and brightest scientific talent.

42 ENGINEERING↗

Serendipitous Discovery of Three Millisecond Pulsars with the GMRT in Fermi-directed Survey and Follow-up Radio Timing

We report the discovery of three millisecond pulsars (MSPs): PSRs J1120–3618, J1646–2142, and J1828+0625 with the Giant Metrewave Radio Telescope (GMRT) at a frequency of 322 MHz using a 32 MHz observing bandwidth. These sources were discovered serendipitously while conducting the deep observations to search for millisecond radio pulsations in the directions of unidentified Fermi Large Area Telescope (LAT) γ-ray sources. We also present phase coherent timing models for these MSPs using ~5 yr of observations with the GMRT. PSR J1120–3618 has a 5.5 ms spin period and is in a binary system with an orbital period of 5.6 days and minimum companion mass of 0.18 M ⊙ , PSR J1646–2142 is an isolated object with a spin period of 5.8 ms, and PSR J1828+0625 has a spin period of 3.6 ms and is in a binary system with an orbital period of 77.9 days and minimum companion mass of 0.27 M ⊙ . The two binaries have very low orbital eccentricities, in agreement with expectations for MSP-helium white dwarf systems. Using the GMRT 607 MHz receivers having a 32 MHz bandwidth, we have also detected PSR J1646–2142 and PSR J1828+0625, but not PSR J1120–3618. PSR J1646–2142 has a wide profile, with significant evolution between 322 and 607 MHz, whereas PSR J1120–3618 exhibits a single peaked profile at 322 MHz and PSR J1828+0625 exhibits a single peaked profile at both the observing frequencies. These MSPs do not have γ-ray counterparts, indicating that these are not associated with the target Fermi LAT pointing emphasizing the significance of deep blind searches for MSPs.

79 ASTRONOMY AND ASTROPHYSICS↗

Gamma-ray burster counterparts - Infrared

The discovery of an IR counterpart to a gamma-ray burster (GRB) would be a big step forward in understanding this enigmatic phenomenon. A program of searching for IR emission from the smallest GRB source regions has been initiated. Seven boxes have been searched with ground-based telescopes at a wavelength of 2.2 microns and 23 with the IRAS data base at wavelengths of 12, 25, 60, and 100 microns. No convincing candidates were identified. The most constraining result are for two error boxes where the K-band magnitude are found to be fainter than 19.03. This observation is compared with the flux predicted from either a companion star or an accretion disk. The new IR observations pose serious difficulties for several GRB models.

Schaefer, Bradley E.↗

Simplified Rotation In Acoustic Levitation

New technique based on old discovery used to control orientation of object levitated acoustically in axisymmetric chamber. Method does not require expensive equipment like additional acoustic drivers of precisely adjustable amplitude, phase, and frequency. Reflecting object acts as second source of sound. If reflecting object large enough, close enough to levitated object, or focuses reflected sound sufficiently, Rayleigh torque exerted on levitated object by reflected sound controls orientation of object.

Barmatz, M. B.↗

The discovery of a young radio galaxy at z = 2.390 - Probing initial star formation at z less than approximately 3.0

The discovery of a weak radio galaxy from the Leiden Berkeley Deep Survey at a redshift of 2.390 is presented, as well as nine-band photometry for the galaxy and for surrounding objects. The source 53W002 is not variable on the time scales of years. Its rest-frame UV continuum is compared with IUE spectra of various nearby galaxies with relatively recent starbursts, and with nearby AGNs. It is inferred from the C IV/Ly-alpha and N V/Ly-alpha ratios that 53W002 has a Seyfert 1-like AGN, and that the ratios constrain the nonthermal component to about 35 percent of the observed UV continuum. Several independent age estimates yield a consistent value of 0.25-0.32 Gyr. The available data are consistent with 53W002 being a genuinely young galaxy seen at a redshift of 2.390 during its first major starburst. It likely started forming most of its current stars at redshifts between 2.5 and 3.0, suggesting that radio galaxies do not form the bulk of their stars coevally, but start doing so over a lengthy period of cosmic time.

Windhorst, Rogier A.↗

X-rays from Cepheus A East and West

We report the discovery of X-rays from both components of Cepheus A, East and West, with the XMM-Newton observatory. HH 168 joins the ranks of other energetic Herbig-Haro objects that are sources of T ≥ 10(6) K X-ray emission. The effective temperature of HH 168 is T = 5.8(-2.3)(+3.5) x 10(6) K, and its unabsorbed luminosity is 1: 1; 10(29) ergs s(-1), making it hotter and less luminous than other representatives of its class. We also detect prominent X-ray emission from the complex of compact radio sources believed to be the power sources for Cep A. We call this source HWX, and it is distinguished by its hard X-ray spectrum, T = 1.2(-0.5)(+1.2) 10(8) K, and its complex spatial distribution. It may arise from one or more protostars associated with the radio complex, the outflows, or a combination of the two. We detect 102 X-ray sources, many presumed to be pre-main-sequence stars on the basis of the reddening of their optical and IR counterparts.

Herbig-Haro objects↗

Automation Hooks Architecture Trade Study for Flexible Test Orchestration

We describe the conclusions of a technology and communities survey supported by concurrent and follow-on proof-of-concept prototyping to evaluate feasibility of defining a durable, versatile, reliable, visible software interface to support strategic modularization of test software development. The objective is that test sets and support software with diverse origins, ages, and abilities can be reliably integrated into test configurations that assemble and tear down and reassemble with scalable complexity in order to conduct both parametric tests and monitored trial runs. The resulting approach is based on integration of three recognized technologies that are currently gaining acceptance within the test industry and when combined provide a simple, open and scalable test orchestration architecture that addresses the objectives of the Automation Hooks task. The technologies are automated discovery using multicast DNS Zero Configuration Networking (zeroconf), commanding and data retrieval using resource-oriented Restful Web Services, and XML data transfer formats based on Automatic Test Markup Language (ATML). This open-source standards-based approach provides direct integration with existing commercial off-the-shelf (COTS) analysis software tools.

Lansdowne, Chatwin A.↗

Discovery and Evolution of the New Black Hole Candidate Swift J1539.2-6227 During Its 2008 Outburst

We report on the discovery by the Swift Gamma-Ray Burst Explorer of the black hole candidate Swift J1539.2-6227 and the subsequent course of an outburst beginning in November 2008 and lasting at least seven months. The source was discovered during normal observations with the Swift Burst Alert Telescope (BAT) on 2008 November 25. An extended observing campaign with the Rossi X-Ray Timing Explorer (RXTE) and Swift provided near-daily coverage over 176 days, giving us a rare opportunity to track the evolution of spectral and timing parameters with fine temporal resolution through a series of spectral states. The source was first detected in a hard state during which strong low-frequency quasiperiodic oscillations (QPOs) were detected. The QPOs persisted for about 35 days and a signature of the transition from the hard to soft intermediate states was seen in the timing data. The source entered a short-lived thermal state about 40 days after the start of the outburst. There were variations in spectral hardness as the source flux declined and returned to a hard state at the end of the outburst. The progression of spectral states and the nature of the timing features provide strong evidence that Swift J1539.2-6227 is a candidate black hole in a low-mass X-ray binary system.

Krimm, H. A.↗

LISA: Opening New Horizons

The Laser Interferometer Space Antenna (LISA) is a space-borne observatory that will open the low frequency (approx.0.1-100 mHz) gravitational wave window on the universe. LISA will observe a rich variety of gravitational wave sources, including mergers of massive black holes, captures of stellar black holes by massive black holes in the centers of galaxies, and compact Galactic binaries. These sources are generally long-lived, providing unprecedented opportunities for multi-messenger astronomy in the transient sky. This talk will present an overview of these scientific arenas, highlighting how LISA will enable stunning discoveries in origins, understanding the cosmic order, and the frontiers of knowledge.

Centrella, Joan M.↗

SGAS 143845.1 + 145407: A Big, Cool Starburst at Redshift 0.816

We present the discovery and a detailed multi-wavelength study of a strongly-lensed luminous infrared galaxy at z=0.816. Unlike most known lensed galaxies discovered at optical or near-infrared wavelengths, this lensed source is red, which the data presented here demonstrate is due to ongoing dusty star formation. The overall lensing magnification (a factor of 17) facilitates observations from the blue optical through to 500 micrometers, fully capturing both the stellar photospheric emission as well as the reprocessed thermal dust emission. We also present optical and near-IR spectroscopy. These extensive data show that this lensed galaxy is in many ways typical of IR-detected sources at z approximates 1, with both a total luminosity and size in accordance with other (albeit much less detailed) measurements in samples of galaxies observed in deep fields with the Spitzer telescope. Its far-infrared spectral energy distribution is well-fit by local templates that are an order of magnitude less luminous than the lensed galaxy; local templates of comparable luminosity are too hot to fit. Its size (D approximately 7 kpc) is much larger than local luminous infrared galaxies, but in line with sizes observed for such galaxies at z approximates 1. The star formation appears uniform across this spatial scale. Thus, this lensed galaxy, which appears representative of vigorously star-forming z approximates 1 galaxies, is forming stars in a fundamentally different mode than is seen at z approximates 0.

Gladders, Michael D.↗

Contributions of the "Great" X-Ray Observatories (XMM-Newton and Chandra) to Astronomy and Astrophysics

NASA s Chandra X-ray Observatory and ESA s XMM-Newton made their first observations over a decade ago. The unprecedented and complementary capabilities of these observatories to detect, image, and measure the energy of cosmic X-rays, achieved less than 50 years after the first detection of an extra-solar X-ray source, represent an increase in sensitivity comparable in going from naked-eye observations to the most powerful optical telescopes over the past 400 years. In this presentation we highlight some of the many discoveries made using these powerful X-ray observatories that have transformed 21st century astronomy. We briefly discuss future prospects for this truly exciting field.

Weisskopf, Martin↗

Evidence For Quasi-Periodic X-ray Dips From An Ultraluminous X-ray Source: Implications for the Binary Motion

We report results from long-term (approx.1240 days) X-ray (0.3-8.0 keV) monitoring of the ultraluminous X-ray source NGC 5408 X-1 with the Swift/X-Ray Telescope. Here we expand on earlier work by Strohmayer (2009) who used only a part of the present data set. Our primary results are: (1) the discovery of sharp, quasi-periodic, energy-independent dips in the X-ray intensity that recur on average every 243 days, (2) the detection of an energy dependent (variability amplitude decreases with increasing energy), quasi-sinusoidal X-ray modulation with a period of 112.6 +/- 4 days, the amplitude of which weakens during the second half of the light curve, and (3) spectral evidence for an increase in photoelectric absorption during the last continuous segment of the data. We interpret the X-ray modulations within the context of binary motion in analogy to that seen in high-inclination accreting X-ray binaries. If correct, this implies that NGC 5408 X-1 is in a binary with an orbital period of 243 +/- 23 days, in contrast to the 115.5 day quasi-sinusoidal period previously reported by Strohmayer (2009). We discuss the overall X-ray modulation within the framework of accretion via Roche-lobe overflow of the donor star. In addition, if the X-ray modulation is caused by vertically structured obscuring material in the accretion disk, this would imply a high value for the inclination of the orbit. A comparison with estimates from accreting X-ray binaries suggests an inclination > or approx.70deg. We note that, in principle, a precessing accretion disk could also produce the observed X-ray modulations.

Pasham, Dheeraj R.↗

Gamma Rays in the Modern Multi-Messenger Astronomy Era

Summary: GW170817 / GRB 170817A is one of the best observed transient and highlights the science impact of multi-messenger observations; Many open questions remain, with increased GW (Gravitational Wave) interferometer sensitivity, there will be more joint detections with GBM (Gamma-ray Burst Monitor), enabling deeper population studies of SGRBs (Short Gamma-Ray Bursts) -Additional distance measures which yield source energetics -Constrain jet structure and opening angle distribution -Cocoon emission from SGRBs -Causes of precursor and extended emission -Rates of SGRBs in the universe with implications for source evolution; Fermi GBM is currently the most prolific short GRB detector -Subthreshold searches are crucial to increasing GBM sensitivity and the detection horizon to weakevents like GRB 170817A; Looking forward to future multimessenger discoveries -Neutron star...Black hole merger, neutrinos, Fast Radio Bursts?

Gamma-Ray Burst↗

Exploring the MeV Sky With A Combined Coded Mask and Compton Telescope: the Galactic Explorer With A Coded Aperture Mask Compton Telescope (GECCO)

The sky at MeV energies is currently poorly explored. Here we present an innovative mission concept that builds upon the heritage of past and current missions improving the sensitivity and, very importantly, the angular resolution. This consists in combining a Compton telescope and a coded-mask telescope. We delineate the motivation for such a concept and we define the scientific goals for such a mission. The Galactic Explorer with a Coded Aperture Mask Compton Telescope (GECCO) is a novel concept for a next-generation telescope covering hard X-ray and soft gamma-ray energies. The potential and importance of this approach that bridges the observational gap in the MeV energy range are presented. With the unprecedented angular resolution of the coded mask telescope combined with the sensitive Compton telescope, a mission such as GECCO can disentangle the discrete sources from the truly diffuse emission. Individual Galactic and extragalactic sources are detected. This also allows to understand the gamma-ray Galactic center excess and the Fermi Bubbles, and to trace the low-energy cosmic rays, and their propagation in the Galaxy. Nuclear and annihilation lines are spatially and spectrally resolved from the continuum emission and from sources, addressing the role of low-energy cosmic rays in star formation and galaxy evolution, the origin of the 511 keV positron line, fundamental physics, and the chemical enrichment in the Galaxy. Such an instrument also detects explosive transient gamma-ray sources, which, in turn, enables identifying and studying the astrophysical objects that produce gravitational waves and neutrinos in a multi-messenger context. By looking at a poorly explored energy band it also allows discoveries of new astrophysical phenomena.

Elena Orlando↗

Seeing Red and Shooting Blanks: A Study of Red Quasars and Blank Field X-Ray Sources

We have identified a population of 'blank field sources' (or 'blanks') among the ROSAT (Roentgen Satellite) bright unidentified X-ray sources with faint optical counterparts. The extreme X-ray over optical flux ratio of blank field sources is not compatible with the main classes of X-ray emitters except for extreme BL Lacertae objects at fx/fv is equal to or less than 35. From the analysis of ROSAT archival data we found evidence for only three sources, out of 16, needing absorption in excess of the Galactic value and no indication of variability. We also found evidence for an extended nature for only one of the five blanks with a serendipitous HRI (High Resolution Imager) detection; this source (1WGA J1226.9+3332) was confirmed as a z=0.89 cluster of galaxies. Palomar images reveal the presence of a red (O - E is equal to or greater than 2) counterpart in the X-ray error circle for six blanks. The identification process brought to the discovery of another high z cluster of galaxies, one (possibly extreme) BL Lac and two apparently normal type 1 AGNs (Active Galactic Nuclei). These AGNs, together with four more AGN-like objects seem to form a well defined group: they present type 1 X-ray spectra but red Palomar counterparts. We discuss the possible explanations for the discrepancy between the X-ray and optical data, among which: a suppressed big blue bump emission, an extreme dust to gas (approximately 40 - 60 the Galactic ratio) ratio value and a high redshift (z is greater than or equal to 3.5) QSO (Quasi-Stellar Object) nature. These AGN-like blanks seem to be the bright (and easier to study) analogs of the sources which are being found in deep Chandra observations. Five more blanks have a still an unknown nature.

Elvis, Martin↗