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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 937 records · Page 52
All sourcesNASA NTRSDOE OSTI
DOE OSTI2019

The case for a high-redshift origin of GRB 100205A

Abstract The number of long gamma-ray bursts (GRBs) known to have occurred in the distant Universe (z > 5) is small (∼15); however, these events provide a powerful way of probing star formation at the onset of galaxy evolution. In this paper, we present the case for GRB 100205A being a largely overlooked high-redshift event. While initially noted as a high-z candidate, this event and its host galaxy have not been explored in detail. By combining optical and near-infrared Gemini afterglow imaging (at t < 1.3 d since burst) with deep late-time limits on host emission from the Hubble Space Telescope, we show that the most likely scenario is that GRB 100205A arose in the range 4 < z < 8. GRB 100205A is an example of a burst whose afterglow, even at ∼1 h post burst, could only be identified by 8-m class IR observations, and suggests that such observations of all optically dark bursts may be necessary to significantly enhance the number of high-redshift GRBs known.

Chrimes, A. A.↗
DOE OSTI2023

The use of synchrotron X-ray fluorescent imaging to study distribution and content of elements in chemically fixed single cells: a case study using mouse pancreatic beta-cells

Synchrotron X-ray fluorescence microscopy (SXRF) presents a valuable opportunity to study the metallome of single cells because it simultaneously provides high-resolution subcellular distribution and quantitative cellular content of multiple elements. Different sample preparation techniques have been used to preserve cells for observations with SXRF, with a goal to maintain fidelity of the cellular metallome. In this case study, mouse pancreatic beta-cells have been preserved with optimized chemical fixation. We show that cell-to-cell variability is normal in the metallome of beta-cells due to heterogeneity and should be considered when interpreting SXRF data. Additionally, we determined the impact of several immunofluorescence (IF) protocols on metal distribution and quantification in chemically fixed beta-cells and found that the metallome of beta-cells was not well preserved for quantitative analysis. However, zinc and iron qualitative analysis could be performed after IF with certain limitations. To help minimize metal loss using samples that require IF, we describe a novel IF protocol that can be used with chemically fixed cells after the completion of SXRF.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Improved detection of low-frequency within-host variants from deep sequencing: A case study with human papillomavirus

Abstract High-coverage sequencing allows the study of variants occurring at low frequencies within samples, but is susceptible to false-positives caused by sequencing error. Ion Torrent has a very low single nucleotide variant (SNV) error rate and has been employed for the majority of human papillomavirus (HPV) whole genome sequences. However, benchmarking of intrahost SNVs (iSNVs) has been challenging, partly due to limitations imposed by the HPV life cycle. We address this problem by deep sequencing three replicates for each of 31 samples of HPV type 18 (HPV18). Errors, defined as iSNVs observed in only one of three replicates, are dominated by C→T (G→A) changes, independently of trinucleotide context. True iSNVs, defined as those observed in all three replicates, instead show a more diverse SNV type distribution, with particularly elevated C→T rates in CCG context (CCG→CTG; CGG→CAG) and C→A rates in ACG context (ACG→AAG; CGT→CTT). Characterization of true iSNVs allowed us to develop two methods for detecting true variants: (1) VCFgenie, a dynamic binomial filtering tool which uses each variant’s allele count and coverage instead of fixed frequency cut-offs; and (2) a machine learning binary classifier which trains eXtreme Gradient Boosting models on variant features such as quality and trinucleotide context. Each approach outperforms fixed-cut-off filtering of iSNVs, and performance is enhanced when both are used together. Our results provide improved methods for identifying true iSNVs in within-host applications across sequencing platforms, specifically using HPV18 as a case study.

Virology↗
DOE OSTI2025

Ethical considerations in infectious disease modelling for public health policy: the case of school closures

Mathematical models of infectious diseases are frequently used as a tool to support public health policy and decisions around the implementation of interventions such as school closures. However, most publications on policy-relevant modelling lack an ethical framework and do not explicitly consider the ethical implications of the work. This creates a risk that the unintended consequences of interventions are overlooked or that models are used to justify decisions that are inconsistent with public health ethics. In this article, we focus on the case study of school closures as a commonly modelled intervention against pandemic influenza, COVID-19 and other infectious disease threats. We briefly review some of the key concepts in public health ethics and describe approaches to modelling the effects of school closures. We then identify a series of ethical considerations involved in modelling school closures. These include accounting for population heterogeneity and inequalities; including a diversity of viewpoints and expertise in model design; considering the distribution of benefits and harms; and model transparency and contextualization. Furthermore, we conclude with some recommendations to ensure that policy-relevant modelling is consistent with some key ethics values.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

The case for free and open source software in research and scholarship

Free and open source software (FOSS) is any computer program released under a licence that grants users rights to run the program for any purpose, to study it, to modify it, and to redistribute it in original or modified form. Here, our aim is to explore the intersection between FOSS and computational reproducibility. We begin by situating FOSS in relation to other ‘open’ initiatives, and specifically open science, open research, and open scholarship. In this context, we argue that anyone who actively contributes to the research process today is a computational researcher, in that they use computers to manage and store information. We then provide a primer to FOSS suitable for anyone concerned with research quality and sustainability—including researchers in any field, as well as support staff, administrators, publishers, funders, and so on. Next, we illustrate how the notions introduced in the primer apply to resources for scientific computing, with reference to the GNU Scientific Library as a case study. We conclude by discussing why the common interpretation of ‘open source’ as ‘open code’ is misplaced, and we use this example to articulate the role of FOSS in research and scholarship today.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2026

Improving neutrino-nuclei interaction models: Recommendations and case studies on Peelle’s Pertinent Puzzle

Improving the modeling of neutrino-nuclei interactions using data-driven methods is crucial for high-precision neutrino oscillation experiments. This paper investigates Peelle’s Pertinent Puzzle (PPP) in the context of neutrino measurements, a longstanding challenge to fitting theoretical models to experimental data. Inconsistencies in data-model comparisons hinder efforts to enhance the accuracy and reliability of model predictions. We analyze various sources contributing to these inconsistencies and propose strategies to address them, supported by practical case studies. We advocate for incorporating model fitting exercises as a standard practice in cross section publications to enhance the robustness of results. We use a common analysis framework to explore PPP-related challenges with MicroBooNE and T2K data in an unified manner. Our findings offer valuable insights for improving the accuracy and reliability of neutrino-nuclei interaction models, particularly by systematically tuning models using data.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

From trivial to topological paramagnets: The case of Z 2 and Z 2 3 symmetries in two dimensions

Using quantum Monte Carlo simulations, we map out the phase diagram of Hamiltonians interpolating between trivial and nontrivial bosonic symmetry-protected topological phases, protected by Z 2 and Z 2 3 symmetries, in two dimensions. In all cases, we find that the trivial and the topological phases are separated by an intermediate phase in which the protecting symmetry is spontaneously broken. Depending on the model, we identify a variety of magnetic orders on the triangular lattice, including ferromagnetism, 3 × 3 order, and stripe orders (both commensurate and incommensurate). Critical properties are determined through a finite-size scaling analysis. Possible scenarios regarding the nature of the phase transitions are discussed.

2-dimensional systems↗
DOE OSTI2023

Local lattice distortions and electronic orders in strongly correlated systems by resonant total x-ray scattering: A case study of A Pt 2 X 2 intermetallics ( A = U , Ce, or La and X = Si or Ge)

Revealing local lattice distortions in physical systems is nontrivial, largely because such structural features often are not necessarily amenable to traditional crystallographic investigations. This poses limits to our understanding of the underlying physic, particularly in the case of strongly correlated systems where structural, electronic and magnetic degrees of freedom are intertwined. Using resonant total x-ray scattering coupled to differential pair distribution function analysis, we reveal the presence of pronounced local lattice distortions in the square net Pt planes in the prototypical strongly correlated APt 2 X 2 intermetallics (A = U, Ce or La and X = Si or Ge). The distortions are present before charge density wave, magnetic, Kondo lattice coherence and/or superconducting orders emerge in these materials and, as density functional calculations suggest, are likely to affect them. Finally, our study sheds light on the poorly known interactions between electronic orders and structural disorder in strongly correlated systems and also demonstrates an advanced experimental approach to determine it that is relevant to any physical system showing deviations from perfect crystallinity.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2024

Tailoring physical properties of crystals through synthetic temperature control: A case study for new polymorphic NbFeT e 2 phases

Growth parameters play a significant role in the crystal quality and physical properties of layered materials. Here we present a case study on a van der Waals magnetic NbFeTe 2 material. Two different types of polymorphic NbFeTe 2 phases, synthesized at different temperatures, display significantly different behaviors in crystal symmetry, electronic structure, electrical transport, and magnetism. While the phase synthesized at low temperature showing behavior consistent with previous reports, the new phase synthesized at high temperature, has completely different physical properties, such as metallic resistivity, long-range ferromagnetic order, anomalous Hall effect, negative magnetoresistance, and distinct electronic structures. Neutron diffraction reveals out-of-plane ferromagnetism below 70 K, consistent with the electrical transport and magnetic susceptibility studies. Finally, our work suggests that simply tuning synthetic parameters in a controlled manner could be an effective route to alter the physical properties of existing materials potentially unlocking new states of matter, or even discovering new materials.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2018

Spin-orbit coupling effects on predicting defect properties with hybrid functionals: A case study in CdTe

Defect formation energies and transition levels are critical in determining doping behavior and recombination in semiconductor applications. Hybrid functionals are often used to overcome the band gap and delocalization errors of standard density-functional theory, and it is tempting to presume that the defect properties are correctly predicted once the hybrid functional mixing parameter reproduces the experimental band gap. However, pronounced spin-orbit coupling (SOC) effects can have an additional important role, which is clearly shown in this work by analyzing SOC effects originating from the Te-p orbitals in CdTe. In this work, we therefore use a hybrid functional that reproduces the experimental band gap when SOC is included, requiring a larger mixing parameter a=0.33 compared to the conventional choice of a=0.25. This hybrid functional was then used to predict defect properties, e.g., formation energy, transition level, and defect equilibrium. For defect states that do not directly involve the Te-p orbitals, such as the Cd interstitial (Cdi), we find that the effect of SOC on the defect levels can be captured by simply considering the SOC-induced band-edge shift. This is not the case for the A center (ClTe-VCd defect pair), where the localized acceptor state formed by Te-p orbitals is more directly affected by the SOC. For this defect, a mixing parameter as large as a=0.40 is required to reproduce the experimental acceptor level. Regarding the implications for photovoltaics, we suggest that the Cdi, which is the dominant compensating donor, could play an important role as a recombination center. While Cdi is usually thought of as a benign shallow donor, our predicted defect levels in the fully band-gap-corrected calculations are deep enough to raise a concern, and we propose a recombination mechanism for electron capture by Cdi.

36 MATERIALS SCIENCE↗
DOE OSTI2025

In-beam 𝛾-ray spectroscopy toward the proton dripline: The curious case of 32 Ar

High-resolution in-beam 𝛾-ray spectroscopy was used to study excited states of the neutron-deficient nucleus 32 Ar populated in fast-beam induced four- and six-nucleon removal reactions from 36,38 Ca. One new 𝛾-ray transition and indications for an additional two were found, allowing for a glimpse at the level scheme beyond the 2$^{+}_{1}$ state. The nature of the new 1900⁢(4)-keV transition is discussed in the context of the known energy spectrum of the mirror nucleus 32 Si and shell-model calculations using the FSU and SDPF-M cross-shell effective interactions. Its resulting parent state at 3767⁢(5)⁢keV, more than 1.3 MeV above the proton separation energy, is tentatively assigned to have mixed 𝑠⁢𝑑-shell and 2p-2h character. It might either be the mirror of the 𝐽 𝜋 = 2$^{+}_{2}$ state of 32 Si at 4230.8⁢(8)⁢keV, but with a decay branch favoring a transition to the 2$^{+}_{2}$ over the ground state, or the mirror of the 4983.9⁢(11)-keV state with quantum numbers 0 + . Furthermore, the resulting mirror-energy differences of −473⁢(5) and −1218⁢(5)⁢keV are both sizable when compared to systematics; in the latter case the result would, in fact, be among the largest reported to date in the nuclear chart or suggest the potential existence of an additional, hitherto unidentified, low-lying 0 + state of 32 Si.

20 ≤ A ≤ 38↗
DOE OSTI2022

Degeneracy engineering for classical and quantum annealing: A case study of sparse linear regression in collider physics

Classical and quantum annealing are computing paradigms that have been proposed to solve a wide range of optimization problems. In this paper, we aim to enhance the performance of annealing algorithms by introducing the technique of degeneracy engineering, through which the relative degeneracy of the ground state is increased by modifying a subset of terms in the objective Hamiltonian. We illustrate this novel approach by applying it to the example of ℓ 0 -norm regularization for sparse linear regression, which is, in general, an NP-hard optimization problem. Specifically, we show how to cast ℓ 0 -norm regularization as a quadratic unconstrained binary optimization (QUBO) problem, suitable for implementation on annealing platforms. As a case study, we apply this QUBO formulation to energy flow polynomials in high-energy collider physics, finding that degeneracy engineering substantially improves the annealing performance. Furthermore, our results motivate the application of degeneracy engineering to a variety of regularized optimization problems.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2025

Building the case for forward muon detection at a muon collider

We survey the opportunities offered by the detection of the forward muons that accompany the creation of neutral effective vector bosons at a muon collider, in different kinematic regimes. Vectors with relatively low energy produce the Higgs boson and the extended muon angular coverage enables studies of the Higgs properties, such as the measurement of the inclusive production cross section and the branching ratio to invisible final states. New heavy particles could be produced by vectors of higher energy, through Higgs portal interactions. If the new particles are invisible, the detection of the forward muons is essential in order to search for this scenario. The angular correlations of the forward muons are sensitive to the quantum interference between the vector-boson helicity amplitudes and can be exploited for the characterization of vector-boson scattering and fusion processes. This is illustrated by analyzing the C P properties of the Higgs coupling to the Z boson. Our findings provide a physics case and a set of benchmarks for the design of a dedicated forward muon detector. Published by the American Physical Society 2025

Ruhdorfer, Maximilian (ORCID:0000000288973223)↗
DOE OSTI2021

Identifying the fingerprints of topological states by tuning magnetoresistance in a semimetal: The case of topological half-Heusler Pt 1 - x Au x LuSb

We report that topological materials often exhibit remarkably linear nonsaturating magnetoresistance (LMR), which is both of scientific and technological importance. However, the role of topologically nontrivial states in the emergence of such a behavior has eluded clear demonstration in experiments. Here, by reducing the coupling between the topological surface states (TSS) and the bulk carriers, we controllably tune the LMR behavior in Pt 1-x Au x LuSb into distinct plateaus in Hall resistance, which we show arise from a quantum Hall phase. This allowed us to reveal how smearing of the Landau levels, which otherwise gives rise to a quantum Hall phase, results in an LMR behavior due to strong interaction between the TSS with a positive g factor and the bulk carriers. We establish that controlling the coupling strength between the surface and the bulk carriers in topological materials can bring about dramatic changes in their magnetotransport behavior. In addition, our work outlines a strategy to reveal macroscopic physical observables of TSS in compounds with a semimetallic bulk band structure, as is the case in multifunctional Heusler compounds, thereby opening up opportunities for their utilization in hybrid quantum structures.

36 MATERIALS SCIENCE↗
DOE OSTI2025

Analyzer-based X-ray phase contrast imaging using the forward-diffracted o-beam in a few-millimetre-thick Bragg-case asymmetrically cut crystal

An analyzer-based X-ray phase contrast imaging experiment employing the forward-diffracted o-beam in a few-millimetre-thick Bragg-case asymmetrically cut analyzer crystal has been implemented and tested in a geometry similar to that used in conventional radiography. The high angular stability requirements were overcome using specially designed crystals and a closed-loop feedback intensity system, monitoring the intensity of the diffracted h-beam. Analyzer-based images (ABis) taken at different angular positions on the forward-diffracted o-beam rocking curve show different contrasts, as expected. However, the ABis did not show sharp borders. This was closely investigated by X-ray topography and Δ d / d mapping and was attributed to the stresses caused by the analyzer crystal's own weight in the bulk. Further investigation of the crystal design using finite element analysis coupled with dynamical theory of X-ray diffraction is envisaged.

Honnicke, Marcelo Goncalves (ORCID:000000033276432↗
DOE OSTI2024

VitroJet: new features and case studies

Single-particle cryo-electron microscopy has become a widely adopted method in structural biology due to many recent technological advances in microscopes, detectors and image processing. Before being able to inspect a biological sample in an electron microscope, it needs to be deposited in a thin layer on a grid and rapidly frozen. The VitroJet was designed with this aim, as well as avoiding the delicate manual handling and transfer steps that occur during the conventional grid-preparation process. Since its creation, numerous technical developments have resulted in a device that is now widely utilized in multiple laboratories worldwide. It features plasma treatment, low-volume sample deposition through pin printing, optical ice-thickness measurement and cryofixation of pre-clipped Autogrids through jet vitrification. This paper presents recent technical improvements to the VitroJet and the benefits that it brings to the cryo-EM workflow. A wide variety of applications are shown: membrane proteins, nucleosomes, fatty-acid synthase, Tobacco mosaic virus, lipid nanoparticles, tick-borne encephalitis viruses and bacteriophages. These case studies illustrate the advancement of the VitroJet into an instrument that enables accurate control and reproducibility, demonstrating its suitability for time-efficient cryo-EM structure determination.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

A Review of Visualization Methods for Cyber-Physical Security: Smart Grid Case Study

Cyber-Physical Systems (CPSs) are becoming increasingly complex and interconnected as they attempt to meet the demands of evolving society. As a result, monitoring and maintaining them becomes a more complex and demanding task for control system operators and cyber defenders. While the literature on visualization techniques in the context of cybersecurity is extensive, the same cannot be said for studies on visualization for the security of cyber-physical systems. This paper aims to fill that gap by: 1) defining the main features of a visualizations workflow for security visualizations in cyber-physical systems. The workflow includes the acquisition of cyber and physical data, processing of data, selection, and configuration of both visualization tools and end-user interactions. 2) Providing an overview of cyber-physical security visualization systems, with a focus on smart grids as a case study. Finally, we use the perspectives gained from this analysis to provide insights and directions for future research and design of cyber-physical visualization techniques.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2018

Defining a Metric Space of Host Logs and Operational Use Cases

Host logs, in particular, Windows Event Logs, are a valuable source of information often collected by security operation centers (SOCs). The semi-structured nature of host logs inhibits automated analytics, and while manual analysis is common, the sheer volume makes manual inspection of all logs impossible. Although many powerful algorithms for analyzing time-series and sequential data exist, utilization of such algorithms for most cyber security applications is either infeasible or requires tailored, research-intensive preparations. In particular, basic mathematic and algorithmic developments for providing a generalized, meaningful similarity metric on system logs is needed to bridge the gap between many existing sequential data mining methods and this currently available but under-utilized data source. In this paper, we provide a rigorous definition of a metric product space on Windows Event Logs, providing an embedding that allows for the application of established machine learning and time-series analysis methods. We then demonstrate the utility and flexibility of this embedding with multiple use-cases on real data: (1) comparing known infected to new host log streams for attack detection and forensics, (2) collapsing similar streams of logs into semantically-meaningful groups (by user, by role), thereby reducing the quantity of data but not the content, (3) clustering logs as well as short sequences of logs to identify and visualize user behaviors and background processes over time. Overall, we provide a metric space framework for general host logs and log sequences that respects semantic similarity and facilitates a wide variety of data science analytics to these logs without data-specific preparations for each.

Verma, Miki↗