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DOE OSTI2025

Transcriptomic and metabolomic analysis of recalcitrant phosphorus solubilization mechanisms in Trametes gibbosa

Introduction Phosphorus (P) is a crucial growth-limiting nutrient in soil, much of which remains challenging for plants to absorb and use. Unlike chemical phosphate fertilizers, phosphate-solubilizing microorganisms (PSMs) offer a means to address available phosphorus deficiency without causing environmental harm. PSMs possess multiple mechanisms for phosphorus solubilization. Although the phosphorus-solubilizing mechanisms of phosphate-solubilizing bacteria (PSB) have been well characterized, the mechanisms utilized by phosphate-solubilizing fungi (PSF) remain largely unexplored. Methods This study isolated a PSF strain, Trametes gibbosa T-41, from soil and evaluated its phosphorus solubilizing capacity with organic (calcium phytin; Phytin-P) and inorganic (tricalcium phosphate; Ca-P) phosphorus sources. The phosphorus solubilization, enzyme activity, and organic acid production of T-41 were measured. And the P-solubilizing mechanism conducted by transcriptomic and metabolomic analyses. Results and discussion T-41 exhibited varying phosphorus solubilizing capacity when grown with organic (calcium phytin; Phytin-P) and inorganic (tricalcium phosphate; Ca-P) phosphorus sources (109.80 ± 8.9 mg/L vs. 57.5 ± 7.9 mg/L, p < 0.05). Compared with the Ca-P treatment, T-41 demonstrated a stronger alkaline phosphatase (ALP) production capacity under Phytin-P treatment (34.5 ± 1.2 μmol/L/h vs. 19.8 ± 0.8 μmol/L/h, p < 0.05). Meanwhile, the production of oxalic acid, maleic acid, and succinic acid was higher under Phytin-P treatment ( p < 0.05). Transcriptomic and metabolomic analysis revealed that different phosphorus sources altered metabolic pathways such as galactose metabolism, glyoxylate and dicarboxylic acid metabolism, and ascorbate and aldolate metabolism. Key metabolites like myo-inositol, 2-oxoglutarate, and pyruvate were found to impact the performance of T. gibbosa T-41 differently under the two P sources. Notably, synthesis in Ca-P vs. Pytin-P, T-41 upregulated genes involved in myo-inositol synthesis, potentially enhancing its P-solubilizing ability. These results provide new insights into the molecular mechanisms of PSF at the transcriptomic and metabolomic levels, laying a theoretical foundation for the broader application of PSF as bio-phosphorus fertilizers in the future.

Chen, Yulan↗

DOE OSTI2024

A goldilocks computational protocol for inhibitor discovery targeting DNA damage responses including replication-repair functions

While many researchers can design knockdown and knockout methodologies to remove a gene product, this is mainly untrue for new chemical inhibitor designs that empower multifunctional DNA Damage Response (DDR) networks. Here, we present a robust Goldilocks (GL) computational discovery protocol to efficiently innovate inhibitor tools and preclinical drug candidates for cellular and structural biologists without requiring extensive virtual screen (VS) and chemical synthesis expertise. By computationally targeting DDR replication and repair proteins, we exemplify the identification of DDR target sites and compounds to probe cancer biology. Our GL pipeline integrates experimental and predicted structures to efficiently discover leads, allowing early-structure and early-testing (ESET) experiments by many laboratories. By employing an efficient VS protocol to examine protein-protein interfaces (PPIs) and allosteric interactions, we identify ligand binding sites beyond active sites, leveraging in silico advances for molecular docking and modeling to screen PPIs and multiple targets. A diverse 3,174 compound ESET library combines Diamond Light Source DSI-poised, Protein Data Bank fragments, and FDA-approved drugs to span relevant chemotypes and facilitate downstream hit evaluation efficiency for academic laboratories. Two VS per library and multiple ranked ligand binding poses enable target testing for several DDR targets. This GL library and protocol can thus strategically probe multiple DDR network targets and identify readily available compounds for early structural and activity testing to overcome bottlenecks that can limit timely breakthrough drug discoveries. By testing accessible compounds to dissect multi-functional DDRs and suggesting inhibitor mechanisms from initial docking, the GL approach may enable more groups to help accelerate discovery, suggest new sites and compounds for challenging targets including emerging biothreats and advance cancer biology for future precision medicine clinical trials.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

The Urban Deployment Model: A Toolset for the Simulation and Performance Characterization of Radiation Detector Deployments in Urban Environments

Static and mobile radiation detectors can be deployed in urban environments for a range of nuclear security applications, including radiological source search-and-tracking scenarios. Modeling detector performance for such applications is challenging, as it does not depend solely on the detector capabilities themselves. Many factors must be taken into consideration, including specific source and background signatures, the topology and constraints of the deployment environment, the presence of nuisance sources, and whether detectors are mobile or static. When considering the simultaneous deployment of multiple, heterogeneous detectors, assessment of the system-wide performance requires the simulation of the individual detectors, and a system-level analysis of the detection performance. In radiological source search-and-tracking scenarios, performance is mostly dominated by the probability of encounter, which depends on the specifics of a given deployment, e.g., static vs. mobile detectors or a combination of both modalities, the number of detectors deployed, the dynamic vs. static setting of false alarm rates, and individual vs. networked operation. The Urban Deployment Model (UDM) toolset was specifically developed to cover the gap in the available generic frameworks for the simulation of radiation detector deployments at city scales. UDM provides a unified and modular framework to support the simulation and performance characterization of heterogeneous detector deployments in urban environments. This paper presents the key components along the UDM workflow.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗

DOE OSTI2021

Novel Protocol for Acute In Situ Ecotoxicity Test Using Native Crustaceans Applied to Groundwater Ecosystems

Current standardized laboratory test protocols use model species that have limitations to accurately assess native species responses to stressors. We developed and tested a novel acute in situ protocol for testing field-collected organisms. We used Asellus aquaticus and NaCl as a reference toxicant to test for the effects of location (laboratory vs. in situ), medium (synthetic vs. field water), substrate (presence vs. absence), and protocol replicability. We further tested the protocol using groundwater-adapted isopods: Proasellus assaforensis for the effect of location, P. cavaticus of medium and P.lusitanicus of substrate. Our results showed that A.aquaticus’ lethality obtained with the novel acute in situ protocol did not significantly differ from those from laboratory testing. However, laboratory tested P.assaforensis showed a higher sensitivity, suggesting that its acclimation to laboratory conditions might have pernicious effects. A. aquaticus and P. cavaticus showed a higher mortality using synthetic medium in situ and under laboratory conditions, which overestimated the stressor’s effect. Besides, substrate use had no significant effect. The novel acute in situ protocol allows the use of native species under realistic scenarios. It is particularly well adapted for assessing the risk of groundwater ecosystems but it can be applied to a wide range of ecosystems.

Castaño-Sánchez, Andrea↗

DOE OSTI2024

Land cover and space use influence coyote carnivory: evidence from stable-isotope analysis

For many species, the relationship between space use and diet composition is complex, with individuals adopting varying space use strategies such as territoriality to facilitate resource acquisition. Coyotes ( Canis latrans ) exhibit two disparate types of space use; defending mutually exclusive territories (residents) or moving nomadically across landscapes (transients). Resident coyotes have increased access to familiar food resources, thus improved foraging opportunities to compensate for the energetic costs of defending territories. Conversely, transients do not defend territories and are able to redirect energetic costs of territorial defense towards extensive movements in search of mates and breeding opportunities. These differences in space use attributed to different behavioral strategies likely influence foraging and ultimately diet composition, but these relationships have not been well studied. We investigated diet composition of resident and transient coyotes in the southeastern United States by pairing individual space use patterns with analysis of stable carbon (δ 13 C) and nitrogen (δ 15 N) isotope values to assess diet. During 2016–2017, we monitored 41 coyotes (26 residents, 15 transients) with GPS radio-collars along the Savannah River area in the southeastern United States. We observed a canopy effect on δ 13 C values and little anthropogenic food in coyote diets, suggesting 13 C enrichment is likely more influenced by reduced canopy cover than consumption of human foods. We also observed other land cover effects, such as agricultural cover and road density, on δ 15 N values as well as reduced space used by coyotes, suggesting that cover types and localized, resident-like space use can influence the degree of carnivory in coyotes. Finally, diets and niche space did not differ between resident and transient coyotes despite differences observed in the proportional contribution of potential food sources to their diets. Although our stable isotope mixing models detected differences between the diets of resident and transient coyotes, both relied mostly on mammalian prey (52.8%, SD = 15.9 for residents, 42.0%, SD = 15.6 for transients). Resident coyotes consumed more game birds (21.3%, SD = 11.6 vs 13.7%, SD = 8.8) and less fruit (10.5%, SD = 6.9 vs 21.3%, SD = 10.7) and insects (7.2%, SD = 4.7 vs 14.3%, SD = 8.5) than did transients. Our findings indicate that coyote populations fall on a feeding continuum of omnivory to carnivory in which variability in feeding strategies is influenced by land cover characteristics and space use behaviors.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1973

Temperature dependence of damage coefficient in electron irradiated solar cells

Measurements of light-generated current vs cell temperature on electron-irradiated n/p silicon solar cells show the temperature coefficient of this current to increase with increasing fluence for both 10-ohm and 20-ohm cells. A relationship between minority-carrier diffusion length and light-generated current was derived by combining measurements of these two parameters: vs fluence at room temperature, and vs cell temperature in cells irradiated to a fluence of 1 x 10 to the 15th power e/sq cm. This relationship was used, together with the light-generated current data, to calculate the temperature dependence of the diffusion-length damage coefficient. The results show a strong decrease in the damage coefficient with increasing temperature in the range experienced by solar panels in synchronous earth orbit.

Faith, T. J.↗

NASA NTRS1976

Bit error rate measurement for evaluation of a fiber optic link

Digital fiber-optic data-link terminal modules are being developed in a number of laboratories, and often the modules take the form of black boxes without convenient access to internal signals. This paper discusses types of measurements which can be made using only the digital terminals of the link. Bit-error-rate (BER) vs signal-power data can, of course, provide a means for proving overall link performance, but it can also be used to determine certain internal parameters of the receiver. The theoretical dependence of the BER-vs-light-signal-power curve shape on receiver input-noise equivalent power and comparator slicing level is discussed. BER-vs-light-signal-power measurements obtained with an experimental link are presented and interpreted with the aid of the theoretical curves. The effects of other problems, such as hum or oscillation, on the BER data are mentioned. Sensitivity of the system BER to bit rate is also discussed, with application to determining system operating limits. Since BER measurements are simple to make and can easily be automated, they may prove to be a useful means for either laboratory evaluation or production-line acceptance testing of sealed terminal modules.

Bergman, L. A.↗

NASA NTRS1978

Effect of temperature on optical fiber transmission

Results are presented concerning the effects of temperature on the transmission properties of various optical fibers including a silicone plastic clad, an acrylic plastic clad, and CVD step-index fibers both with and without polyurethane jackets. Results are presented for the normalized transmitted power vs temperature, the index of refraction vs temperature, and induced attenuation coefficients vs temperature. The data show that the intrinsic transmission of a CVD fiber is independent of temperature over the -110 to +150 C range. Plastic clad fused silica fibers are subject to transmission losses at lower temperatures due to changes in the optical index of the cladding polymer. Acrylic-clad and plastic-clad silica fibers also show transmission losses at lower temperatures, but to lesser extents.

Yeung, W. F.↗

NASA NTRS1979

Analysis of resistance-versus-pressure relations for the diamond indentor-anvil system

Pressures in excess of 1.4 Mbars have been attained by Ruoff and Wanagel (1977) by pressing tiny spherical diamond indentors (tip radius of 2 microns or less) against a diamond anvil. This system has been used for resistance-vs-pressure measurements as follows. A thin (200 A) coherent layer of a conductor, e.g., palladium, can be sputtered on the tip and on the anvil and electrical leads can then be attached to these at points remote from the contact area. Then a thin layer of the sample to be studied can be evaporated, sputtered, or placed on the anvil. When the indentor is pressed against the sample, the resistance changes as the pressure increases and as the contact radius increases. This paper analyzes the resistance-vs-pressure relationship for three different types of resistivity-vs-pressure behavior.

Ruoff, A. L.↗

NASA NTRS1981

Precision timekeeping using a small passive hydrogen maser

The timekeeping ability of a prototype passive hydrogen maser which is a factor of 5 smaller in size, weight, and cost than any previously designed, was compared to UTC (NBS) based on 10 cesium frequency standards including a large primary standard, NBS-4. The frequency of the prototype was monitored as a function of source pressure, cavity temperature, microwave power, modulation width, and magnetic field. Based on these measurements, a frequency stability of better than 6 x 10 to the -15 power was expected, implying a timekeeping ability of order 0.5 ns/day. Measurements vs UTC(NBS) indicate a joint timekeeping a stability of order 1.2 ns/day. Simultaneous measurements made between NBS-4, UTC(6600), and the small passive me maser show peak to peak time variations of the small maser vs UTC(6600) was 10 ns for the full 32 days if the average rate and drift are considered. Frequency stability of the small prototype vs UTC (NBS) was to 1.1 x 10 to the -14th power for tau = 1 to 8 days.

Walls, F. L.↗

NASA NTRS1981

Preparation and evaluation of advanced electrocatalysts for phosphoric acid fuel cells

The highest performance fuel cell cathode electrocatalyst combination ever observed gives 755 mV vs hydrogen at 100 ASF on air at 180 C and shows a potential improvement to 775 mV vs hydrogen for better electrode structures. A pressurized fuel cell (UTC at 5 atm) would then give 805 mV at 320 ASF and 180 C. Another activity diagnostic is the performance of this electrocatalyst on oxygen at 900 mV vs hydrogen. The value for electrocatalyst is 44 mA per milligram of platinum and is projected to reach 60 mA per milligram of platinum with improved electrode structures. Since the electrocatalyst surface area and the electrode structure are not yet optimized there is considerable room for performance enhancement beyond these values, especially at higher temperatures.

Stonehart, P.↗

NASA NTRS1981

Enhanced skeletal muscle insulin sensitivity in year-old rats adapted to hypergravity

Rats induced into a hypermetabolic state by exposure to chronic (7 mo) centrifugation at 4.15 g exhibited increased glucose uptake at lower plasma insulin levels than weight-matched control animals following oral glucose administration. In order to determine the insulin sensitivity of specific tissues, the effect of exogenous insulin on glucose uptake by isolated perfused livers and hindlim skeletal muscle from rats adapted to chronic centrifugation for one year was compared with perfused tissue from 2.5 mo-old noncentrifuged control animals of equal body weight. Metabolic glucose clearance by skeletal muscle from hypergravic rats did not prove significantly greater than control muscle when perfused in the absence of insulin (10.6 vs 8.1 microliters/min-g-muscle), but was twice as fast (23.0 vs 9.5) at perfusate insulin levels of 35 micro-U/ml. Conversely, glucose uptake by hypergravic livers was significantly decreased (P is less than 0.001) compared with control livers (10.3 vs 27.8) at perfusate insulin levels of 40 micro-U/ml. Results suggest that skeletal muscle rather than liver is primarily responsible for the enhanced sensitivity to insulin and the increased energy expenditure observed in rats subjected to hypergravity.

Mondon, C. E.↗

NASA NTRS1981

Investigations of medium wavelength magnetic anomalies in the Eastern Pacific using Magsat data

Processing continued on the data set covering the first three months of the mission. Orbits were selected over a specified range of longitude and latitude and those orbits falling within the geographical boundaries were stored on a disk and a listing made. To verify the quality of the data, plots were made showing altitude vs latitude, anomalous field vs latitude, and corrected anomalous field vs latitude. Results of the plotting showed that: (1) data from the first day of the mission are not usable because they are too noisy; (2) some orbits contain spikes, no doubt a processing error on the tape; (3) some orbits contain a 20 deg region in latitude, offset roughly 30 nT from the rest of the anomalous field profiles; and (4) the correlation between the adjacent orbits is poor. Even the new ring current coefficients provided with a later, corrected set of data tapes did not not yield the desired correlations.

Harrison, C. G. A.↗

NASA NTRS1983

Investigation of several aspects of LANDSAT-4 data quality

No insurmountable problems in change detection analysis were found when portions of scenes collected simultaneously by LANDSAT 4 MSS and either LANDSAT 2 or 3. The cause of the periodic noise in LANDSAT 4 MSS images which had a RMS value of approximately 2DN should be corrected in the LANDSAT D instrument before its launch. Analysis of the P-tape of the Arkansas scene shows bands within the same focal plane very well registered except for the thermal band which was misregistered by approximately three 28.5 meter pixels in both directions. It is possible to derive tight confidence bounds for the registration errors. Preliminary analyses of the Sacramento and Arkansas scenes reveals a very high degree of consistency with earlier results for bands 3 vs 1, 3 vs 4, and 3 vs 5. Results are presented in table form. It is suggested that attention be given to the standard deviations of registrations errors to judge whether or not they will be within specification once any known mean registration errors are corrected. Techniques used for MTF analysis of a Washington scene produced noisy results.

Wrigley, R. C.↗

NASA NTRS1983

Seismic velocity structure of the lunar mantle

The recently completed set of seismic arrival times from the Apollo lunar seismic network are inverted to estimate the average seismic velocities in three sections of the lunar mantle: two for the upper mantle and one for the middle mantle. The method used is a variation of the linearized least squares inversion where the inversion is accomplished in steps. The estimated average velocities in the upper mantle decrease from Vp = 7.74 km/sec and Vs = 4.49 km/sec in the section above 270-km depth to Vp = 7.46 km/sec and Vs = 4.25 km/sec in the section between 270- and 500-km depth, confirming the earlier finding of negative gradients based on seismic amplitude variations. The average velocities in the middle mantle between the depths of 500 km and 1000 km of Vp = 8.26 km/sec and Vs = 4.65 km/sec are significantly higher than those in the upper mantle, contradicting earlier estimates based on more limited data. The higher velocities may suggest initial melting of the moon down to at least 1000-km depth.

Nakamura, Y.↗

NASA NTRS1984

Experimental and theoretical study of the formation of the 2AB, 3AB, and 9A meteorite chemical groups from the parent liquid

Segregation of solute elements was measured in plane front solidified Fe-Ni-S-P alloys of meteoritic composition containing Ir, Ge and/or Cu. The Ni and P contents reach maximum values of 10.5 wt% and 1.1 wt%, respectively, in austenite (taenite) at the end of primary solidification. Distribution coefficients of Ni, P, Ir, Ge and Cu were determined from the solidified alloys. The distribution coefficients vary with the S and P content of the liquid. In addition the distribution coefficients of Ni, P, Ir and Ge increase and the distribution coefficient of Cu decreases with the S to P ratio. Equations that describe the concentration dependence of the distribution coefficients were developed and used to calculate solute redistribution during the solidification of IIAB, IIIAB and IVA parent bodies. The calculated P vs Ni, Ir vs Ni and Ge vs Ni trends are in good agreement with the observed meteoritic data. Since the calculated value of the maximum solid solubility of P agrees well with the observed maximum P composition data for IIAB and IIIAB irons, it is concluded that complete crystallization of the parent liquids of IIAB and IIIAB had occurred before any fragmentation of the solidified body.

Sellamuthu, R.↗

NASA NTRS1985

Graphic displays of vector magnetograph data

Graphic displays that have proved useful in dealing with vector magnetograph data are summarized in three settings: real-time control, analysis, and final presentation. Among the topics discussed are: flexible, implicit data-scaling; geometrical transformations; methods of comparing fields (e.g., transverse vs. longitudinal; observed vs. computed; one time vs. another); displaying the magnitude and direction of the transverse field; minimizing the display time of serial graphics devices; graphic file structure; and graphic interaction with operators and observers.

Rabin, D. M.↗

NASA NTRS1985

Some characteristics of the solar flare event of February 16, 1984

In the morning of February 16, 1984 a solar cosmic ray event (GLE) was recorded by the world wide network of neutron monitors (NM). The counting rate vs. time profile of the Goose Bay NM (geog. lat. = 53.3 deg. N, deog. long. = 299.6 deg E) where the increase is expressed as percent of the counting rate of an equatorial sea level NM is presented. The Goose Bay NM was observed to have the maximum response to the solar particles. Its counting rate vs. time profile exhibits a rapid increase to maximum, has a large amplitude (approx. 170%) and decays rapidly to background in approx. 90 min. In Fig. 1 we also show the counting rate vs. time profile for the Tixie Bay NM (71.6 deg, 128.9 deg) which recorded an increase of only a few percent. Since the NMs at Goose Bay and Tixie Bay have asymptotic viewing directions approx. 180 deg apart in longitude, the anisotropy of the solar particle flux at Earth from these stations.

Debrunner, H.↗