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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 937 records · Page 52
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Constraining the Milky Way’s ultraviolet-to-infrared SED with Gaussian process regression

ABSTRACT Improving our knowledge of global Milky Way (MW) properties is critical for connecting the detailed measurements only possible from within our Galaxy to our understanding of the broader galaxy population. We here train Gaussian process regression (GPR) models on SDSS (Sloan Digital Sky Survey) galaxies to map from galaxy properties (stellar mass, apparent axial ratio, star formation rate, bulge-to-total ratio, disc scale length, and bar vote fraction) to ultraviolet (UV; GALEX FUV/NUV), optical (SDSS ugriz), and infrared (IR; 2MASS JHKs and WISE W1/W2/W3/W4) fluxes and uncertainties. With these models, we estimate the photometric properties of the MW, resulting in a full UV-to-IR spectral energy distribution (SED) as it would be measured externally, viewed face-on. We confirm that the MW lies in the green valley in optical diagnostic diagrams, but show for the first time that the MW is in the star-forming region in standard UV and IR diagnostics – characteristic of the population of red spiral galaxies. Although our GPR method predicts one band at a time, the resulting MW UV–IR SED is consistent with SEDs of local spirals with characteristics broadly similar to the MW, suggesting that these independent predictions can be combined reliably. Our UV–IR SED will be invaluable for reconstructing the MW’s star formation history using the same tools employed for external galaxies, allowing comparisons of results from in situ measurements to those from the methods used for extragalactic objects.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Cosmology from clustering, cosmic shear, CMB lensing, and cross correlations: combining Rubin observatory and Simons Observatory

ABSTRACT In the near future, the overlap of the Rubin Observatory Legacy Survey of Space and Time (LSST) and the Simons Observatory (SO) will present an ideal opportunity for joint cosmological data set analyses. In this paper, we simulate the joint likelihood analysis of these two experiments using six two-point functions derived from galaxy position, galaxy shear, and CMB lensing convergence fields. Our analysis focuses on realistic noise and systematics models and we find that the dark energy Figure of merit (FoM) increases by 53 per cent (92 per cent) from LSST-only to LSST+SO in Year 1 (Year 6). We also investigate the benefits of using the same galaxy sample for both clustering and lensing analyses, and find the choice improves the overall signal to noise by ${\sim}30{-}40{{\ \rm per\ cent}}$, which significantly improves the photo-z calibration and mildly improves the cosmological constraints. Finally, we explore the effects of catastrophic photo-z outliers finding that they cause significant parameter biases when ignored. We develop a new mitigation approach termed ‘island model’, which corrects a large fraction of the biases with only a few parameters while preserving the constraining power.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Spectral analysis of ultra-cool white dwarfs polluted by planetary debris

ABSTRACT We identify two ultra-cool (${T_\mathrm{eff}}\lt 4000$ K) metal-polluted (DZ) white dwarfs WD J2147−4035 and WD J1922+0233 as the coolest and second coolest DZ stars known to date with ${T_\mathrm{eff}}\approx 3050$ K and ${T_\mathrm{eff}}\approx 3340$ K, respectively. Strong atmospheric collision-induced absorption (CIA) causes the suppression of red optical and infrared flux in WD J1922+0233, resulting in an unusually blue colour given its low temperature. WD J2147−4035 has moderate infrared CIA yet has the reddest optical colours known for a DZ white dwarf. Microphysics improvements to the non-ideal effects and CIA opacities in our model atmosphere code yields reasonable solutions to observations of these ultra-cool stars. WD J2147−4035 has a cooling age of over 10 Gyr which is the largest known for a DZ white dwarf, whereas WD J1922+0233 is slightly younger with a cooling age of 9 Gyr. Galactic kinematics calculations from precise Gaia EDR3 astrometry reveal these ultra-cool DZ stars as likely members of the Galactic disc thus they could be pivotal objects in future studies constraining an upper age limit for the disc of the Milky Way. We present intermediate-resolution spectroscopy for both objects, which provides the first spectroscopic observations of WD J2147−4035. Detections of sodium and potassium are made in both white dwarfs, in addition to calcium in WD J1922+0233 and lithium in WD J2147−4035. We identify the magnetic nature of WD J2147−4035 from Zeeman splitting in the lithium line and also make a tentative detection of carbon, so we classify this star as DZQH. WD J1922+0233 likely accreted planetary crust debris, while the debris composition that polluted WD J2147−4035 remains unconstrained.

Elms, Abbigail K. (ORCID:0000000176667416)↗
DOE OSTI2022

An intergalactic medium temperature from a giant radio galaxy

ABSTRACT The warm–hot intergalactic medium (warm–hot IGM, or WHIM) pervades the filaments of the Cosmic Web and harbours half of the Universe’s baryons. The WHIM’s thermodynamic properties are notoriously hard to measure. Here we estimate a galaxy group–WHIM boundary temperature using a new method. In particular, we use a radio image of the giant radio galaxy (giant RG, or GRG) created by NGC 6185, a massive nearby spiral. We analyse this extraordinary object with a Bayesian 3D lobe model and deduce an equipartition pressure Peq = 6 × 10−16 Pa – among the lowest found in RGs yet. Using an X-ray-based statistical conversion for Fanaroff–Riley II RGs, we find a true lobe pressure $P = 1.5\substack{+1.7\\ -0.4}\times 10^{-15}\ \mathrm{Pa}$. Cosmic Web reconstructions, group catalogues, and MHD simulations furthermore imply an Mpc–scale IGM density $1 + \delta _\mathrm{IGM} = 40\substack{+30\\ -10}$. The buoyantly rising lobes are crushed by the IGM at their inner side, where an approximate balance between IGM and lobe pressure occurs: PIGM ≈ P. The ideal gas law then suggests an IGM temperature $T_\mathrm{IGM} = 11\substack{+12\\-5} \times 10^6\ \mathrm{K}$, or $k_\mathrm{B}T_\mathrm{IGM} = 0.9\substack{+1.0\\-0.4}\ \mathrm{keV}$, at the virial radius – consistent with X-ray-derived temperatures of similarly massive groups. Interestingly, the method is not performing at its limit: in principle, estimates TIGM ∼ 4 × 106 K are already possible – rivalling the lowest X-ray measurements available. The technique’s future scope extends from galaxy group outskirts to the WHIM. In conclusion, we demonstrate that observations of GRGs in Cosmic Web filaments are finally sensitive enough to probe the thermodynamics of galaxy groups and beyond.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Accelerating cosmological inference with Gaussian processes and neural networks – an application to LSST Y1 weak lensing and galaxy clustering

ABSTRACT Studying the impact of systematic effects, optimizing survey strategies, assessing tensions between different probes and exploring synergies of different data sets require a large number of simulated likelihood analyses, each of which cost thousands of CPU hours. In this paper, we present a method to accelerate cosmological inference using emulators based on Gaussian process regression and neural networks. We iteratively acquire training samples in regions of high posterior probability which enables accurate emulation of data vectors even in high dimensional parameter spaces. We showcase the performance of our emulator with a simulated 3×2 point analysis of LSST-Y1 with realistic theoretical and systematics modelling. We show that our emulator leads to high-fidelity posterior contours, with an order of magnitude speed-up. Most importantly, the trained emulator can be re-used for extremely fast impact and optimization studies. We demonstrate this feature by studying baryonic physics effects in LSST-Y1 3×2 point analyses where each one of our MCMC runs takes approximately 5 min. This technique enables future cosmological analyses to map out the science return as a function of analysis choices and survey strategy.

Astronomy & Astrophysics↗
DOE OSTI2022

Cosmology with the Roman Space Telescope – Synergies with CMB lensing

ABSTRACT We explore synergies between the Nancy Grace Roman Space Telescope and CMB lensing data to constrain dark energy and modified gravity scenarios. A simulated likelihood analysis of the galaxy clustering and weak lensing data from the Roman Space Telescope High Latitude Survey combined with CMB lensing data from the Simons Observatory is undertaken, marginalizing over important astrophysical effects and calibration uncertainties. Included in the modelling are the effects of baryons on small-scale clustering, scale-dependent growth suppression by neutrinos, as well as uncertainties in the galaxy clustering biases, in the intrinsic alignment contributions to the lensing signal, in the redshift distributions, and in the galaxy shape calibration. The addition of CMB lensing roughly doubles the dark energy figure-of-merit from Roman photometric survey data alone, varying from a factor of 1.7 to 2.4 improvement depending on the particular Roman survey configuration. Alternatively, the inclusion of CMB lensing information can compensate for uncertainties in the Roman galaxy shape calibration if it falls below the design goals. Furthermore, we report the first forecast of Roman constraints on a model-independent structure growth, parametrized by σ8(z), and on the Hu-Sawicki f(R) gravity as well as an improved forecast of the phenomenological (Σ0, μ0) model. We find that CMB lensing plays a crucial role in constraining σ8(z) at z > 2, with percent-level constraints forecasted out to z = 4. CMB lensing information does not improve constraints on the f(R) model substantially. It does, however, increase the (Σ0, μ0) figure-of-merit by a factor of about 1.5.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

SILCC – VII. Gas kinematics and multiphase outflows of the simulated ISM at high gas surface densities

ABSTRACT We present magnetohydrodynamic (MHD) simulations of the star-forming multiphase interstellar medium (ISM) in stratified galactic patches with gas surface densities Σgas = 10, 30, 50, and 100 $\mathrm{M_\odot \, pc^{-2}}$. The silcc project simulation framework accounts for non-equilibrium thermal and chemical processes in the warm and cold ISM. The sink-based star formation and feedback model includes stellar winds, hydrogen-ionizing UV radiation, core-collapse supernovae, and cosmic ray (CR) injection and diffusion. The simulations follow the observed relation between Σgas and the star formation rate surface density ΣSFR. CRs qualitatively change the outflow phase structure. Without CRs, the outflows transition from a two-phase (warm and hot at 1 kpc) to a single-phase (hot at 2 kpc) structure. With CRs, the outflow always has three phases (cold, warm, and hot), dominated in mass by the warm phase. The impact of CRs on mass loading decreases for higher Σgas and the mass loading factors of the CR-supported outflows are of order unity independent of ΣSFR. Similar to observations, vertical velocity dispersions of the warm ionized medium (WIM) and the cold neutral medium (CNM) correlate with the star formation rate as $\sigma _\mathrm{z} \propto \Sigma _\mathrm{SFR}^a$, with a ∼ 0.20. In the absence of stellar feedback, we find no correlation. The velocity dispersion of the WIM is a factor ∼2.2 higher than that of the CNM, in agreement with local observations. For $\Sigma _\mathrm{SFR} \gtrsim 1.5 \times 10^{-2}\, \mathrm{M}_\odot \, \mathrm{yr}^{-1}\, \mathrm{kpc}^{-2}$ the WIM motions become supersonic.

Astronomy & Astrophysics↗
DOE OSTI2023

Primordial non-Gaussianity with angular correlation function: integral constraint and validation for DES

ABSTRACT Local primordial non-Gaussianity (PNG) is a promising observable of the underlying physics of inflation, characterized by $f_{\rm NL}^{\rm loc}$. We present the methodology to measure $f_{\rm NL}^{\rm loc}$ from the Dark Energy Survey (DES) data using the two-point angular correlation function (ACF) with scale-dependent bias. One of the focuses of the work is the integral constraint (IC). This condition appears when estimating the mean number density of galaxies from the data and is key in obtaining unbiased $f_{\rm NL}^{\rm loc}$ constraints. The methods are analysed for two types of simulations: ∼246 goliat-png N-body small area simulations with fNL equal to −100 and 100, and 1952 Gaussian ice-cola mocks with fNL = 0 that follow the DES angular and redshift distribution. We use the ensemble of goliat-png mocks to show the importance of the IC when measuring PNG, where we recover the fiducial values of fNL within the 1σ when including the IC. In contrast, we found a bias of ΔfNL ∼ 100 when not including it. For a DES-like scenario, we forecast a bias of ΔfNL ∼ 23, equivalent to 1.8σ, when not using the IC for a fiducial value of fNL = 100. We use the ice-cola mocks to validate our analysis in a realistic DES-like set-up finding it robust to different analysis choices: best-fitting estimator, the effect of IC, BAO damping, covariance, and scale choices. We forecast a measurement of fNL within σ(fNL) = 31 when using the DES-Y3 BAO sample, with the ACF in the 1 deg < θ < 20 deg range.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

How do supernova remnants cool? – I. Morphology, optical emission lines, and shocks

ABSTRACT Supernovae (SNe) inject ∼1051 erg in the interstellar medium, thereby shocking and heating the gas. A substantial fraction of this energy is later lost via radiative cooling. We present a post-processing module for the flash code to calculate the cooling radiation from shock-heated gas using collisional excitation data from mappings v. When applying this tool to a simulated SN remnant (SNR), we find that most energy is emitted in the EUV. However, optical emission lines ([O iii], [N ii], [S ii], H α, H β) are usually best observable. Our shock detection scheme shows that [S ii] and [N ii] emissions arise from the thin shell surrounding the SNR, while [O iii], H $\rm \alpha$, and H $\rm \beta$ originate from the volume-filling hot gas inside the SNR bubble. We find that the optical emission lines are affected by the SNR’s complex structure and its projection on to the plane of the sky because the escaping line luminosity can be reduced by 10–80 per cent due to absorption along the line of sight. Additionally, the subtraction of contaminating background radiation is required for the correct classification of an SNR on the oxygen or sulphur BPT diagrams. The electron temperature and density obtained from our synthetic observations match well with the simulation but are very sensitive to the assumed metallicity.

Astronomy & Astrophysics↗
DOE OSTI2023

A catalogue of cataclysmic variables from 20 yr of the Sloan Digital Sky Survey with new classifications, periods, trends, and oddities

ABSTRACT We present a catalogue of 507 cataclysmic variables (CVs) observed in SDSS I to IV including 70 new classifications collated from multiple archival data sets. This represents the largest sample of CVs with high-quality and homogeneous optical spectroscopy. We have used this sample to derive unbiased space densities and period distributions for the major sub-types of CVs. We also report on some peculiar CVs, period bouncers and also CVs exhibiting large changes in accretion rates. We report 70 new CVs, 59 new periods, 178 unpublished spectra, and 262 new or updated classifications. From the SDSS spectroscopy, we also identified 18 systems incorrectly identified as CVs in the literature. We discuss the observed properties of 13 peculiar CVS, and we identify a small set of eight CVs that defy the standard classification scheme. We use this sample to investigate the distribution of different CV sub-types, and we estimate their individual space densities, as well as that of the entire CV population. The SDSS I to IV sample includes 14 period bounce CVs or candidates. We discuss the variability of CVs across the Hertzsprung–Russell diagram, highlighting selection biases of variability-based CV detection. Finally, we searched for, and found eight tertiary companions to the SDSS CVs. We anticipate that this catalogue and the extensive material included in the Supplementary Data will be useful for a range of observational population studies of CVs.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

On the gamma-ray emission from the core of the Sagittarius dwarf galaxy

ABSTRACT We use Fermi-LAT data to analyse the faint gamma-ray source located at the centre of the Sagittarius (Sgr) dwarf spheroidal galaxy. In the 4FGL-DR3 catalogue, this source is associated with the globular cluster, M54. We investigate the spectral energy distribution and spatial extension of this source, with the goal of testing two hypotheses: (1) the emission is due to millisecond pulsars within M54, or (2) the emission is due to annihilating dark matter from the Sgr halo. For the pulsar interpretation, we consider a two-component model which describes both the lower-energy magnetospheric emission and possible high-energy emission arising from inverse Compton scattering. We find that this source has a point-like morphology at low energies, consistent with magnetospheric emission, and find no evidence for a higher-energy component. For the dark matter interpretation, we find the signal favours a dark matter mass of mχ = 29.6 ± 5.8 GeV and an annihilation cross section of $\sigma v = (2.1 \pm 0.59) \times 10^{-26} \, \text{cm}^3$ s−1 for the $b \bar{b}$ channel (or mχ = 8.3 ± 3.8 GeV and $\sigma v = (0.90 \pm 0.25) \times 10^{-26} \, \text{cm}^3$ s−1 for the τ+τ− channel), when adopting a J-factor of $J=10^{19.6} \, \text{GeV}^2 \, \text{cm}^{-5}$. This parameter space is consistent with gamma-ray constraints from other dwarf galaxies and with dark matter interpretations of the Galactic Centre Gamma-Ray Excess.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2023

Cosmology from weak lensing, galaxy clustering, CMB lensing, and tSZ – I. 10 × 2pt modelling methodology

ABSTRACT The overlap of galaxy surveys and cosmic microwave background (CMB) experiments presents an ideal opportunity for joint cosmological data set analyses. In this paper we develop a halo model-based method for the first joint analysis combining these two experiments using 10 correlated two-point functions (10 × 2pt) derived from galaxy position, galaxy shear, CMB lensing convergence, and Compton-y fields. We explore this method using the Vera Rubin Observatory Legacy Survey of Space and Time (LSST) and the Simons Observatory (SO) as examples. We find such LSS × CMB joint analyses lead to significant improvement in Figure-of-Merit of Ωm and S8 over the constraints from using LSS-only probes within Λ cold dark matter (ΛCDM) model. We identify that the shear–y and y–y correlations are the most valuable additions when thermal Sunyaev–Zel’dolvich (tSZ) is included. We further identify the dominant sources of halo model uncertainties in the small-scale modelling, and investigate the impact of halo self-calibration due to the inclusion of small-scale tSZ information.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Exogeological inferences from white dwarf pollutants: the impact of stellar physics

Many white dwarfs have accreted material from their own planetary systems. These objects can be used to infer the composition of exoplanetary material and identify evidence for key geological processes. However, the white dwarf atmospheric physics distorts the inferred material composition away from the true composition, mainly through differential atomic diffusion of the accreted metals. Correcting for this effect is essential, but is dependent on various physical assumptions associated with the white dwarf itself. We first focus on the effect of assumptions related to convective overshoot and thermohaline mixing on the atomic diffusion time-scales. For white dwarfs with H-dominated atmospheres between 12000 K and 18000 K⁠, we find that including a complete treatment of convective overshoot decreases the inferred Fe and O abundances in accreted material. For these white dwarfs, we also find that including thermohaline mixing decreases Fe and O abundances. For He-dominated systems, the effect of convective overshoot is comparatively minor. We then explore the overall effect of other physical assumptions by comparing publicly available grids of diffusion time-scales. We find that the choice of model grid can have a large impact for white dwarfs with He-dominated atmospheres, notably on the inferred core to mantle ratio of accreted material. We identify several systems for which the geological interpretation is robust against these systematics. We also present a ‘discrepancy metric’ which can be used to estimate the potential impact of changing the stellar physics without requiring detailed modelling.

Astronomy and AstroPhysics↗
DOE OSTI2025

Discovery of a z ∼ 0.8 ultra steep spectrum radio halo in the MeerKAT-South Pole Telescope Survey

Radio haloes are diffuse synchrotron sources that trace the turbulent intracluster medium (ICM) of galaxy clusters. However, their origin remains unknown. Two main formation models have been proposed: the hadronic model, in which relativistic electrons are continuously injected by cosmic-ray protons; and the leptonic turbulent re-acceleration model, where cluster mergers re-energize electrons in situ. A key discriminant between the two models would be the existence of ultra-steep spectrum radio haloes (USSRHs), which can only be produced through turbulent re-acceleration. Here, we report the discovery of an USSRH in the galaxy cluster SPT-CLJ2337–5942 at redshift $z = 0.78$ in the MeerKAT-South Pole Telescope 100 deg$^2$ UHF (0.58–1.09 GHz) survey. This discovery is noteworthy for two primary reasons: it is the highest redshift USSRH system to date; and the close correspondence of the radio emission with the thermal ICM as traced by Chandra X-ray observations, further supporting the leptonic re-acceleration model. The halo is underluminous for its mass, consistent with a minor merger origin, which produces steep-spectrum, lower luminosity haloes. This result demonstrates the power of wide-field, high-fidelity, low-frequency ($\lesssim 1$ GHz) surveys like the MeerKAT-SPT 100 deg$^2$ programme to probe the origin and evolution of radio haloes over cosmic time, ahead of the Square Kilometre Array.

X-rays: galaxies↗
DOE OSTI2025

DAmodel: hierarchical Bayesian modelling of DA white dwarfs for spectrophotometric calibration

We use hierarchical Bayesian modelling to calibrate a network of 32 all-sky faint DA white dwarf (DA WD) spectrophotometric standards (⁠16.5 < V , 19.5⁠) alongside three CALSPEC standards, from 912 Å to 32 μm. The framework is the first of its kind to jointly infer photometric zero points and WD parameters (surface gravity log g⁠, effective temperature T eff ⁠, extinction A V ⁠, dust relation parameter R V ) by simultaneously modelling both photometric and spectroscopic data. We model panchromatic Hubble Space Telescope Wide Field Camera 3 (HST/WFC3) UVIS and IR photometry, HST/STIS UV spectroscopy, and ground-based optical spectroscopy to sub-per cent precision. Photometric residuals for the sample are the lowest yet yielding < 0.004 mag RMS on average from the UV to the NIR, achieved by jointly inferring time-dependent changes in system sensitivity and WFC3/IR count-rate nonlinearity. Our GPU-accelerated implementation enables efficient sampling via Hamiltonian Monte Carlo, critical for exploring the high-dimensional posterior space. The hierarchical nature of the model enables population analysis of intrinsic WD and dust parameters. Inferred spectral energy distributions from this model will be essential for calibrating the James Webb Space Telescope as well as next-generation surveys, including Vera Rubin Observatory’s Legacy Survey of Space and Time and the Nancy Grace Roman Space Telescope.

methods: statistical↗
DOE OSTI2020

From hydrogen to helium: the spectral evolution of white dwarfs as evidence for convective mixing

ABSTRACT We present a study of the hypothesis that white dwarfs undergo a spectral change from hydrogen- to helium-dominated atmospheres using a volume-limited photometric sample drawn from the Gaia-DR2 catalogue, the Sloan Digital Sky Survey (SDSS), and the Galaxy Evolution Explorer (GALEX). We exploit the strength of the Balmer jump in hydrogen-atmosphere DA white dwarfs to separate them from helium-dominated objects in SDSS colour space. Across the effective temperature range from 20 000 to 9000 K, we find that 22 per cent of white dwarfs will undergo a spectral change, with no spectral evolution being ruled out at 5σ. The most likely explanation is that the increase in He-rich objects is caused by the convective mixing of DA stars with thin hydrogen layers, in which helium is dredged up from deeper layers by a surface hydrogen convection zone. The rate of change in the fraction of He-rich objects as a function of temperature, coupled with a recent grid of 3D radiation-hydrodynamic simulations of convective DA white dwarfs – which include the full overshoot region – lead to a discussion on the distribution of total hydrogen mass in white dwarfs. We find that 60 per cent of white dwarfs must have a hydrogen mass larger than MH/MWD = 10−10, another 25 per cent have masses in the range MH/MWD = 10−14–10−10, and 15 per cent have less hydrogen than MH/MWD = 10−14. These results have implications for white dwarf asteroseismology, stellar evolution through the asymptotic giant branch and accretion of planetesimals on to white dwarfs.

Cunningham, Tim↗
DOE OSTI2020

The Human Phenotype Ontology in 2021

The Human Phenotype Ontology (HPO, https://hpo.jax.org) was launched in 2008 to provide a comprehensive logical standard to describe and computationally analyze phenotypic abnormalities found in human disease. The HPO is now a worldwide standard for phenotype exchange. The HPO has grown steadily since its inception due to considerable contributions from clinical experts and researchers from a diverse range of disciplines. Here, we present recent major extensions of the HPO for neurology, nephrology, immunology, pulmonology, newborn screening, and other areas. For example, the seizure subontology now reflects the International League Against Epilepsy (ILAE) guidelines and these enhancements have already shown clinical validity. We present new efforts to harmonize computational definitions of phenotypic abnormalities across the HPO and multiple phenotype ontologies used for animal models of disease. These efforts will benefit software such as Exomiser by improving the accuracy and scope of cross-species phenotype matching. The computational modeling strategy used by the HPO to define disease entities and phenotypic features and distinguish between them is explained in detail. We also report on recent efforts to translate the HPO into indigenous languages. Finally, we summarize recent advances in the use of HPO in electronic health record systems.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

Abstract Bridging the gap between genetic variations, environmental determinants, and phenotypic outcomes is critical for supporting clinical diagnosis and understanding mechanisms of diseases. It requires integrating open data at a global scale. The Monarch Initiative advances these goals by developing open ontologies, semantic data models, and knowledge graphs for translational research. The Monarch App is an integrated platform combining data about genes, phenotypes, and diseases across species. Monarch's APIs enable access to carefully curated datasets and advanced analysis tools that support the understanding and diagnosis of disease for diverse applications such as variant prioritization, deep phenotyping, and patient profile-matching. We have migrated our system into a scalable, cloud-based infrastructure; simplified Monarch's data ingestion and knowledge graph integration systems; enhanced data mapping and integration standards; and developed a new user interface with novel search and graph navigation features. Furthermore, we advanced Monarch's analytic tools by developing a customized plugin for OpenAI’s ChatGPT to increase the reliability of its responses about phenotypic data, allowing us to interrogate the knowledge in the Monarch graph using state-of-the-art Large Language Models. The resources of the Monarch Initiative can be found at monarchinitiative.org and its corresponding code repository at github.com/monarch-initiative/monarch-app.

60 APPLIED LIFE SCIENCES↗