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At least 937 records · Page 52
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Combining field and remote sensing data to estimate forest canopy damage and recovery following tropical cyclones across tropical regions

Abstract As tropical forests cycle the most water and carbon, it is crucial to understand the short- and long-term effects of intensifying cyclones on these ecosystems. Soil nutrient status has been shown to moderate forest cyclone responses using field litterfall measurements, but litterfall is one of the multiple cyclone impact metrtics, which may or may not be correlated with one another or with site nutrients. We used remotely sensed vegetation indices to quantify immediate damage and two-year recovery for 42 cases across nine tropical forests in Hawaii, Puerto Rico, Mexico, Australia, and Taiwan affected by 12 cyclones between 2004 and 2017. We tested whether changes in leaf area index (LAI) and enhanced vegetation index (EVI) correlated with changes in litterfall observations and how changes varied with total soil phosphorus (P) concentrations across regions. We compared cyclone-induced changes and recovery of LAI and EVI to litterfall observations compiled in a pantropical meta-analysis. We found large variation in changes in LAI and EVI across forests, with the greatest reductions in LAI (−77%) and EVI (−77%) in Mexico (Jalisco) and Puerto Rico, respectively. LAI ( r = −0.52) and EVI ( r = −0.60) changes correlated with those in litterfall across cases. Post-cyclone data showed recovery of LAI by four months, EVI by two months, and litterfall by ten months. We detected larger changes in LAI and EVI in forests with higher soil P, but these relationships were not significant when accounting for cyclone and site as random effects. Principal component analyses indicated a regional clustering of cases related to their contrasting cyclone regimes, with the frequency and intensity of cyclone events negatively correlated. Overall, remote sensing observations complement but do not substitute for ground observations that reveal cyclone damage and post-cyclone recovery in tropical forests, and soil phosphorus moderates some but not all metrics of stability in response to cyclones.

Bloom, Dellena E. (ORCID:0000000205981747)↗
DOE OSTI2024

Electron microscopy evidence of gadolinium toxicity being mediated through cytoplasmic membrane dysregulation

Past functional toxicogenomic studies have indicated that genes relevant to membrane lipid synthesis are important for tolerance to the lanthanides. Moreover, previously reported imaging of patient's brains following administration of gadolinium-based contrast agents shows gadolinium lining the vessels of the brain. Taken together, these findings suggest the disruption of cytoplasmic membrane integrity as a mechanism by which lanthanides induce cytotoxicity. In the presented work we used scanning transmission electron microscopy and spatially resolved elemental spectroscopy to image the morphology and composition of gadolinium, europium, and samarium precipitates that formed on the outside of yeast cell membranes. In no sample did we find that the lanthanide contaminant had crossed the cell membrane, even in experiments using yeast mutants with disrupted genes for sphingolipid synthesis—the primary lipids found in yeast cytoplasmic membranes. Rather, we have evidence that lanthanides are co-located with phosphorus outside the yeast cells. Finally, these results lead us to hypothesize that the lanthanides scavenge or otherwise form complexes with phosphorus from the sphingophospholipid head groups in the cellular membrane, thereby compromising the structure or function of the membrane, and gaining the ability to disrupt membrane function without entering the cell.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2015

Superconducting gap evolution in overdoped BaFe 2 ( As 1 - x P x ) 2 single crystals through nanocalorimetry

We report on specific heat measurements on clean overdoped BaFe 2 (As 1-x P x ) 2 single crystals performed with a high resolution membrane-based nanocalorimeter. A nonzero residual electronic specific heat coefficient at zero temperature γ r = C/T | T→ 0 is seen for all doping compositions, indicating a considerable fraction of the Fermi surface ungapped or having very deep minima. The remaining superconducting electronic specific heat is analyzed through a two-band s-wave alpha model in order to investigate the gap structure. Close to optimal doping we detect a single zero-temperature gap of Δ 0 ~ 5.3 meV, corresponding to Δ 0 /k B T c ~ 2.2. Increasing the phosphorus concentration x, the main gap reduces till a value of Δ 0 ~ 1.9 meV for x = 0.55 and a second weaker gap becomes evident. From the magnetic field effect on γ r , all samples however show similar behavior γ r (H) $-$ γ r (H = 0) ∝ to H n , with n between 0.6 and 0.7]. This indicates that, despite a considerable redistribution of the gap weights, the total degree of gap anisotropy does not change drastically with doping.

Campanini, D.↗
DOE OSTI2015

Structural and magnetic phase transitions near optimal superconductivity in BaFe 2 (As 1-x P x ) 2

In this study, we use nuclear magnetic resonance (NMR), high-resolution x-ray and neutron scattering to study structural and magnetic phase transitions in phosphorus-doped BaFe 2 (As 1-x P x ) 2 . Thus, previous transport, NMR, specific heat, and magnetic penetration depth measurements have provided compelling evidence for the presence of a quantum critical point (QCP) near optimal superconductivity at x = 0.3. However, we show that the tetragonal-to-orthorhombic structural (T s ) and paramagnetic to antiferromagnetic (AF, T N ) transitions in BaFe 2 (As 1-x P x ) 2 are always coupled and approach to T N ≈ T s ≥ T c (≈ 29 K) for x = 0.29 before vanishing abruptly for x ≥ 0.3. These results suggest that AF order in BaFe 2 (As 1-x P x ) 2 disappears in a weakly first order fashion near optimal superconductivity, much like the electron-doped iron pnictides with an avoided QCP.

36 MATERIALS SCIENCE↗
DOE OSTI2019

Programmable bias field observed in graded ferromagnetic semiconductor films with broken symmetry

We report on the observation of a field-induced magnetic bias effect in a Ga 0.94 Mn 0.06 As 1-y P y thin film with digitally graded phosphorus content. Although phosphorus concentration in the sample is changed in steps from y approximate to 0.03 to y approximate to 0.28, the magnetometry and magnetotransport data display a coherent magnetic response typical for single-layer in-plane magnetized films with cubic and weak [110] uniaxial anisotropy. Unexpectedly, low-temperature planar Hall resistance loops exhibit remarkable asymmetry tunable by application of strong in-plane initial magnetic field H Ini . We discuss this unusual memory effect, resembling the magnetization asymmetry in the exchange biased magnetic bilayers, in terms of a unidirectional bias field H b induced by H Ini . We show that such bias field defines the delayed or accelerated nucleation of domains with chiral domain walls performing the magnetization reversal.

36 MATERIALS SCIENCE↗
DOE OSTI2015

Role of microstructure and doping on the mechanical strength and toughness of polysilicon thin films

We investigated the role of microstructure and doping on the mechanical strength of microscale tension specimens of columnar grain and laminated polysilicon doped with different concentrations of phosphorus. The average tensile strengths of undoped columnar and laminated polysilicon specimens were 1.3 ± 0.1 and 2.45 ± 0.3 GPa, respectively. Heavy doping reduced the strength of columnar polysilicon specimens to 0.9 ± 0.1 GPa. On grounds of Weibull statistics, the experimental results from specimens with gauge sections of 1000 μm × 100 μm × 1 μm predicted quite well the tensile strength of specimens with gauge sections of 150 μm × 3.75 μm × 1 μm, and vice versa. The large difference in the mechanical strength between columnar and laminated polysilicon specimens was due to sidewall flaws in columnar polysilicon, which were introduced during reactive ion etching (RIE) and were further exacerbated by phosphorus doping. Moreover, the removal of the large defect regions at the sidewalls of columnar polysilicon specimens via ion milling increased their tensile strength by 70%-100%, approaching the strength of laminated polysilicon, which implies that the two types of polysilicon films have comparable tensile strength. Measurements of the effective mode I critical stress intensity factor, KIC,eff, also showed that all types of polysilicon films had comparable resistance to fracture. Therefore, additional processing steps to eliminate the edge flaws in RIE patterned devices could result in significantly stronger microelectromechanical system components fabricated by conventional columnar polysilicon films.

42 ENGINEERING↗
DOE OSTI2017

Further Studies on the Effect of SiN x Refractive Index and Emitter Sheet Resistance on Potential-Induced Degradation

We present the impacts of silicon nitride (SiNx) antireflection coating refractive index and emitter sheet resistance on potential-induced degradation of the shunting type (PID-s). Previously, it has been shown that the cell becomes more PID-s-susceptible as the refractive index decreases or the emitter sheet resistance increases. To verify the effect of refractive index on PID-s, we fabricated cells with varying SiN x refractive index (1.87, 1.94, 2.05) on typical p-type base solar cells with ~60 Ω/sq emitters. However, none of these cells showed output power degradation, regardless of the refractive index. Further investigation of the emitter showed that the PID-s was suppressed at ~60 Ω/sq due to the extremely high surface phosphorus concentration (6 x 10 21 cm -3 ), as measured by secondary ion mass spectrometry. Furthermore, PID-s was observed on cells possessing a high emitter sheet resistance (~80 Ω/sq). In conclusion, the emitter surface phosphorus concentration plays an important role in determining PID-s susceptibility.

14 SOLAR ENERGY↗
DOE OSTI2020

Biomass Production with Conservation Practices for Two Iowa Watersheds

Hydrologic modeling was used to estimate potential changes in nutrients, suspended sediment, and streamflow in various biomass production scenarios with conservation practices under different landscape designs. Two major corn and soybean croplands were selected for study: the South Fork of the Iowa River watershed and the headwater of the Raccoon River watershed. A physically based model, the Soil and Water Assessment Tool, was used to simulate hydrology and water quality under different scenarios with conservation practices and biomass production. Scenarios are based on conservation practices and biomass production; riparian buffer (RB), saturated buffer, and grassed waterways; various stover harvest rates of 30%, 45%, and 70% with and without winter cover crops; and conversion of marginal land to switchgrass. Conservation practices and landscape design with different biomass feedstocks were shown to significantly improve water quality while supporting sustainable biomass production. Model results for nitrogen, phosphorus, and suspended sediments were analyzed temporally at spatial scales that varied from hydrologic response units to the entire watershed. With conservation practices, water quality could potentially improve by reducing nitrogen loads by up to 20%–30% (stover harvest with cover crop), phosphorus loads by 20%–40% (RB), and sediment loads by 30%–70% (stover harvest with cover crop and RB).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2018

Investigation of soil properties using different techniques of mid‐infrared spectroscopy

Summary Diffuse reflectance spectroscopy (DRF), attenuated total reflectance spectroscopy (ATR) and Fourier transform infrared photoacoustic spectroscopy (PAS) are useful techniques that are commonly used to characterize soil properties. Here, these techniques were used to evaluate individual properties of 1456 paddy soil samples from Nanjing, China, to explore their features in the mid‐infrared range. The diffuse reflectance spectroscopy showed broad and shouldered peaks that ranged from 4000 to 500 cm −1 . Attenuated total reflectance spectroscopy produced main peaks around 1000 cm −1 . Fourier transform infrared photoacoustic spectroscopy spectra showed several moderate intensity peaks in the regions of 4000–2600 and 2500–500 cm −1 . The effective variables (wavenumbers) were selected using an uninformative variable elimination (UVE) algorithm to predict soil pH, and soil organic matter (SOM), total nitrogen (TN) and available phosphorus (AP) contents; it used a self‐adaptive partial least squares model (SAM–PLS). The results showed that selected wavenumbers improved the accuracy of prediction for pH, and SOM, TN and AP contents. For the prediction of pH, ATR spectra showed marginally better performance than the other spectra. The DRF spectroscopy was the optimal method for SOM and TN prediction. Available phosphorus contents were predicted poorly by all three spectra. Furthermore, mid‐infrared incident light paths, absorption modes, sensing styles, as well as peak interference and the prediction model, were the main factors that affected the assessment of soil properties in the three types of spectroscopy. Highlights Soil spectra data were measured with DRF, ATR and PAS spectrometers over the range 4000–500 cm −1 . A UVE algorithm was used to select effective wavenumbers from the full spectrum. The pH, SOM, TN and AP were estimated using three techniques based on a SAM–PLS model. Mid‐infrared incident light paths and absorption modes affected prediction performance of the three techniques.

Ma, F.↗
DOE OSTI2017

Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China)

Uncovering which environmental factors have the greatest influence on community diversity patterns and how ecological processes govern community turnover are key questions related to understanding community assembly mechanisms. Although we have good understanding of plant and animal community assembly, the mechanisms regulating diversity patterns of aquatic bacterial communities in lake ecosystems remains poorly understood. Here we present nearly a decade-long time-series study of bacterioplankton communities from the eutrophic Lake Donghu (Wuhan, China) using 16S rRNA gene amplicon sequencing. We found strong repeatable seasonal patterns for the overall community, common (detected in more than 50% samples) and dominant bacterial taxa (relative abundance > 1%). Moreover, community composition tracked the seasonal temperature gradient, indicating that temperature is an important environmental factor controlling observed diversity patterns. Total phosphorus also contributed significantly to the seasonal shifts in bacterioplankton composition. However, any spatial pattern across the main lake areas was overwhelmed by temporal variability in this eutrophic lake system. Phylogenetic analysis further indicated that 75%-82% of community turnover was governed by homogeneous selection, suggesting that the bacterioplankton communities are mainly controlled by niche-based processes. However, dominant niches available within seasons might be occupied by similar combinations of bacterial taxa with modest dispersal rates throughout this lake system. This study gives us important insights into community assembly and seasonal turnover of lake bacterioplankton, it may be also useful to predict temporal patterns of other planktonic communities.

16S rRNA amplicon sequencing↗
DOE OSTI2021

Genome-Resolved Metagenomics of a Photosynthetic Bioreactor Performing Biological Nutrient Removal

Enhanced biological phosphorus removal (EBPR) is an economically and environmentally significant wastewater treatment process for removing excess phosphorus by harnessing the metabolic physiologies of enriched microbial communities. We present a genome-resolved metagenomic data set consisting of 86 metagenome-assembled genome sequences from a photosynthetically operated lab-scale bioreactor simulating EBPR.

McDaniel, Elizabeth A.↗
DOE OSTI2021

Metabolic Differentiation of Co-occurring Accumulibacter Clades Revealed through Genome-Resolved Metatranscriptomics

Natural microbial communities consist of closely related taxa that may exhibit phenotypic differences and inhabit distinct niches. However, connecting genetic diversity to ecological properties remains a challenge in microbial ecology due to the lack of pure cultures across the microbial tree of life. “Candidatus Accumulibacter phosphatis” (Accumulibacter) is a polyphosphate-accumulating organism that contributes to the enhanced biological phosphorus removal (EBPR) biotechnological process for removing excess phosphorus from wastewater and preventing eutrophication from downstream receiving waters. Distinct Accumulibacter clades often coexist in full-scale wastewater treatment plants and laboratory-scale enrichment bioreactors and have been hypothesized to inhabit distinct ecological niches. However, since individual strains of the Accumulibacter lineage have not been isolated in pure culture to date, these predictions have been made solely on genome-based comparisons and enrichments with varying strain compositions. Here, we used genome-resolved metagenomics and metatranscriptomics to explore the activity of coexisting Accumulibacter strains in an engineered bioreactor environment. We obtained four high-quality genomes of Accumulibacter strains that were present in the bioreactor ecosystem, one of which is a completely contiguous draft genome scaffolded with long Nanopore reads. We identified core and accessory genes to investigate how gene expression patterns differed among the dominating strains. Using this approach, we were able to identify putative pathways and functions that may confer distinct functions to Accumulibacter strains and provide key functional insights into this biotechnologically significant microbial lineage.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Taxonomic distribution of metabolic functions in bacteria associated with Trichodesmium consortia

The photosynthetic and diazotrophic cyanobacterium Trichodesmium is a key contributor to marine biogeochemical cycles in the subtropical-oligotrophic oceans. Trichodesmium form colonies that harbor a distinct microbial community in comparison to the surrounding seawater. The presence of their associated bacteria can expand Trichodesmium’s functional potential and is predicted to influence the cycling of carbon, nitrogen, phosphorus, and iron (C, N, P, and Fe). To link the bacteria associated with Trichodesmium to key functional traits and elucidate how community structure can influence nutrient cycling, we characterized Red Sea Trichodesmium colonies using metagenomics and metaproteomics. Colonies harbored bacteria that typically associate with algae and particles, such as the ubiquitous Alteromonas macleodii, but also lineages specific to Trichodesmium, such as members from the order Balneolales. The majority of associated bacteria were auxotrophic for different vitamins, indicating their dependency on vitamin production by Trichodesmium. The associated bacteria carry functional traits including siderophore biosynthesis, reduced phosphorus metabolism, and denitrification pathways. The analysis supports Trichodesmium as an active hotspot for C, N, P, Fe, and vitamin exchange. In turn, Trichodesmium may rely on associated bacteria to meet its high Fe demand as several lineages synthesize photolabile siderophores (e.g., vibrioferrin, rhizoferrin, petrobactin) which can enhance the bioavailability of particulate Fe to the entire consortium. Collectively, the results indicate that Trichodesmium colonies provide a structure where these interactions can take place. While further studies are required to clarify the exact nature of these interactions, Trichodesmium’s reliance on particle and algae-associated bacteria and the observed redundancy of key functional traits likely underpins the resilience of Trichodesmium within an ever-changing global environment.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Wetlands Geoprocessor (v 1.0)

Wetlands have often been described as the “Earth’s kidneys” because wetlands have the ability filter pollutants and purify water. Based upon wetland storage capacity, average daily flow, and inflow nutrient loading this model estimates potential load reductions of nitrate and orthophosphate) from a constructed surface flow wetland (CW). The model relies upon equations, coefficients, and models provided by Cheng et al. 2020 and Cheng & Basu 2017. Nitrogen (N) and phosphorus are important nutrients to ecosystems, but high concentrations can lead to water quality issues. Major sources of these nutrients come from agricultural areas where fertilizer is applied in large quantitates and/or animal waste is present. Excess nitrate and phosphorus may result in overgrowth of algae, which can decrease the dissolved oxygen in water, thereby harming and killing fish and other aquatic species. This model evaluates water purification results and estimates cost to install a surface flow constructed wetlands.

Davis, Cleve↗
DOE OSTI2023

Rapid remodeling of the soil lipidome in response to a drying-rewetting event

Abstract Background Microbiomes contribute to multiple ecosystem services by transforming organic matter in the soil. Extreme shifts in the environment, such as drying-rewetting cycles during drought, can impact the microbial metabolism of organic matter by altering microbial physiology and function. These physiological responses are mediated in part by lipids that are responsible for regulating interactions between cells and the environment. Despite this critical role in regulating the microbial response to stress, little is known about microbial lipids and metabolites in the soil or how they influence phenotypes that are expressed under drying-rewetting cycles. To address this knowledge gap, we conducted a soil incubation experiment to simulate soil drying during a summer drought of an arid grassland, then measured the response of the soil lipidome and metabolome during the first 3 h after wet-up. Results Reduced nutrient access during soil drying incurred a replacement of membrane phospholipids, resulting in a diminished abundance of multiple phosphorus-rich membrane lipids. The hot and dry conditions increased the prevalence of sphingolipids and lipids containing long-chain polyunsaturated fatty acids, both of which are associated with heat and osmotic stress-mitigating properties in fungi. This novel finding suggests that lipids commonly present in eukaryotes such as fungi may play a significant role in supporting community resilience displayed by arid land soil microbiomes during drought. As early as 10 min after rewetting dry soil, distinct changes were observed in several lipids that had bacterial signatures including a rapid increase in the abundance of glycerophospholipids with saturated and short fatty acid chains, prototypical of bacterial membrane lipids. Polar metabolites including disaccharides, nucleic acids, organic acids, inositols, and amino acids also increased in abundance upon rewetting. This rapid metabolic reactivation and growth after rewetting coincided with an increase in the relative abundance of firmicutes, suggesting that members of this phylum were positively impacted by rewetting. Conclusions Our study revealed specific changes in lipids and metabolites that are indicative of stress adaptation, substrate use, and cellular recovery during soil drying and subsequent rewetting. The drought-induced nutrient limitation was reflected in the lipidome and polar metabolome, both of which rapidly shifted (within hours) upon rewet. Reduced nutrient access in dry soil caused the replacement of glycerophospholipids with phosphorus-free lipids and impeded resource-expensive osmolyte accumulation. Elevated levels of ceramides and lipids with long-chain polyunsaturated fatty acids in dry soil suggest that lipids likely play an important role in the drought tolerance of microbial taxa capable of synthesizing these lipids. An increasing abundance of bacterial glycerophospholipids and triacylglycerols with fatty acids typical of bacteria and polar metabolites suggest a metabolic recovery in representative bacteria once the environmental conditions are conducive for growth. These results underscore the importance of the soil lipidome as a robust indicator of microbial community responses, especially at the short time scales of cell-environment reactions.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Effectiveness of Residue and Tillage Management on Runoff Pollutant Reduction from Agricultural Areas

Highlights No-till and no-till residue systems were effective in reducing runoff particulate and total nutrients but increased dissolved nutrients. Maintaining >30% residue cover reduced most runoff constituents, irrespective of no-till or tillage. No-till-residue prevented runoff nutrient losses and benefitted farm revenue by avoiding tillage. Abstract. Reduced tillage management conservation practices (No-till and Reduced-till) are widely adopted in agriculture; however, understanding their overall effectiveness for water quality protection is challenging. A meta-analysis was conducted to understand and quantify the effectiveness of residue and tillage management on runoff, sediment, and nutrient losses from agricultural fields. Annual runoff and the associated sediment, and nutrient (nitrogen and phosphorus) loads were compiled from 60 peer reviewed research articles published across the United States and Canada. A total of 1575 site-years of data were categorized into tillage (<30% surface cover), no-tillage (<30% surface cover), tillage with residue (>30% surface cover), no-tillage with residue (>30% surface cover), and pasture management. No-tillage, no-tillage-residue, and tillage-residue managements were evaluated for their effectiveness in reducing runoff, nutrients, and sediment loads compared to tillage. Synthesized and surveyed corn yield data were used to evaluate the economic cost effectiveness of no-tillage-residue management with respect to tillage. Across the site years (1968-2019) studied, median runoff depth for no-tillage and no-tillage-residue were 84% and 70% greater than tillage and tillage-residue management, respectively. No-tillage-residue management had up to 86% less sediment losses than tillage systems, on average, for both >30% and <30% surface cover. No-tillage-residue management was most effective, with a positive performance effectiveness of 65% to 90% in controlling sediments, particulate, and total nutrient losses in runoff compared to tillage. Cost effectiveness analysis revealed the benefits of no-tillage-residue management in reducing nutrient loads and increasing net-farm revenue by avoiding tillage operational costs. Except for dissolved phosphorus, no-tillage-residue management cost effectiveness for sediments and nutrient loads ranged from negative $6 to negative $102 per every Mg or kg of load reduction, indicating it had both economic and environmental benefits compared to tillage management. Overall, these results indicate that over the long-term, no-tillage and tillage, combined with greater than 30% residue cover, can effectively reduce sediment and nutrient losses. This work highlights the importance of crop residues on the soil surface to reduce runoff losses, even in no-tillage systems. Keywords: Conservation tillage, No-tillage, Residue cover, Tillage, Water quality.

Agriculture↗