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At least 937 records · Page 52

Electrically tunable localized tunneling channels in silicene nanoribbons

The topological phase of a silicene nanoribbon holding edge states in the bulk energy gap can be easily broken by an external electric field. Here, we show through low-energy Green's function calculations that it is possible to localize conducting channels anywhere in a silicene nanoribbon by applying an inhomogeneous electric field. The spin degeneracy of these channels can also be broken in the same manner, allowing conduction of spin as well as charge. On this basis, we suggest design of a ternary logic device, which could be used in low-power circuits. Our study demonstrates that silicene and related group IV elements with honeycomb structure could provide a platform for efficient manipulation of spin currents via external electric fields, without the need to switch magnetic fields for spintronics applications.

36 MATERIALS SCIENCE↗

Channel length dependence of negative-bias-illumination-stress in amorphous-indium-gallium-zinc-oxide thin-film transistors

We have investigated the dependence of Negative-Bias-illumination-Stress (NBIS) upon channel length, in amorphous-indium-gallium-zinc-oxide (a-IGZO) thin-film transistors (TFTs). The negative shift of the transfer characteristic associated with NBIS decreases for increasing channel length and is practically suppressed in devices with L = 100-μm. The effect is consistent with creation of donor defects, mainly in the channel regions adjacent to source and drain contacts. Excellent agreement with experiment has been obtained by an analytical treatment, approximating the distribution of donors in the active layer by a double exponential with characteristic length L{sub D} ∼ L{sub n} ∼ 10-μm, the latter being the electron diffusion length. The model also shows that a device with a non-uniform doping distribution along the active layer is in all equivalent, at low drain voltages, to a device with the same doping averaged over the active layer length. These results highlight a new aspect of the NBIS mechanism, that is, the dependence of the effect upon the relative magnitude of photogenerated holes and electrons, which is controlled by the device potential/band profile. They may also provide the basis for device design solutions to minimize NBIS.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Waveguide CO{sub 2} laser with a quasi-homogeneous distribution of the output radiation intensity

An experimental sample of a waveguide CO{sub 2} laser with a quasi-uniform profile of the output radiation intensity is designed on the basis of a waveguide quasi-optical cavity of a new type comprising the generic confocal cavity with a nonuniform mirror and the hollow waveguide with the dimensions satisfying the conditions for self-imaging the quasi-uniform field. The surface of the mirror has the discrete large-scale absorbing nonuniformities. Results of theoretical and experimental investigations of spatial-energy characteristics of the laser in using uniform or amplitude-stepped reflecting mirrors are presented. (lasers)

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

On Euler's problem

We consider the classical problem on the tallest column which was posed by Euler in 1757. Bernoulli-Euler theory serves today as the basis for the design of high buildings. This problem is reduced to the problem of finding the potential for the Sturm-Liouville equation corresponding to the maximum of the first eigenvalue. The problem has been studied by many mathematicians but we give the first rigorous proof of the existence and uniqueness of the optimal column and we give new formulae which let us find it. Our method is based on a new approach consisting in the study of critical points of a related nonlinear functional. Bibliography: 6 titles.

97 MATHEMATICS AND COMPUTING↗

Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis

Significance Genome-scale models of metabolism are important tools for metabolic engineering and production strain development. We present an experimentally validated and manually curated model of metabolism in Synechococcus elongatus PCC 7942 that ( i ) leads to discovery of unique metabolic characteristics, such as the importance of a truncated, linear TCA pathway, ( ii ) highlights poorly understood areas of metabolism as exemplified by knowledge gaps in nucleotide salvage, and ( iii ) accurately quantifies light input and self-shading. We now have a metabolic model that can be used as a basis for metabolic design in S. elongatus .

09 BIOMASS FUELS↗

Modulating metal-centered dimerization of a lanthanide chaperone protein for separation of light lanthanides

Elucidating details of biology’s selective uptake and trafficking of rare earth elements, particularly the lanthanides, has the potential to inspire sustainable biomolecular separations of these essential metals for myriad modern technologies. Here, we biochemically and structurally characterize Methylobacterium (Methylorubrum) extorquens LanD, a periplasmic protein from a bacterial gene cluster for lanthanide uptake. This protein provides only four ligands at its surface-exposed lanthanide-binding site, allowing for metal-centered protein dimerization that favors the largest lanthanide, La III . However, the monomer prefers Nd III and Sm III , which are disfavored lanthanides for cellular utilization. Structure-guided mutagenesis of a metal-ligand and an outer-sphere residue weakens metal binding to the LanD monomer and enhances dimerization for Pr III and Nd III by 100-fold. Selective dimerization enriches high-value Pr III and Nd III relative to low-value La III and Ce III in an all-aqueous process, achieving higher separation factors than lanmodulins and comparable or better separation factors than common industrial extractants. Finally, we show that LanD interacts with lanmodulin (LanM), a previously characterized periplasmic protein that shares LanD’s preference for Nd III and Sm III . Our results suggest that LanD’s unusual metal-binding site transfers less-desirable lanthanides to LanM to siphon them away from the pathway for cytosolic import. The properties of LanD show how relatively weak chelators can achieve high selectivity, and they form the basis for the design of protein dimers for separation of adjacent lanthanide pairs and other metal ions.

lanthanide biochemistry↗

Structural Basis for the Inhibition of Human Alkyladenine DNA Glycosylase (AAG) by 3, N 4 -Ethenocytosine-containing DNA

Reactive oxygen and nitrogen species, generated by neutrophils and macrophages in chronically inflamed tissues, readily damage DNA, producing a variety of potentially genotoxic etheno base lesions; such inflammation-related DNA damage is now known to contribute to carcinogenesis. Although the human alkyladenine DNA glycosylase (AAG) can specifically bind DNA containing either 1,N6 -ethenoadenine (ϵA) lesions or 3,N4 -ethenocytosine (ϵC) lesions, it can only excise ϵA lesions. AAG binds very tightly to DNA containing ϵC lesions, forming an abortive protein-DNA complex; such binding not only shields ϵC from repair by other enzymes but also inhibits AAG from acting on other DNA lesions. To understand the structural basis for inhibition, we have characterized the binding of AAG to DNA containing ϵC lesions and have solved a crystal structure of AAG bound to a DNA duplex containing the ϵC lesion. This study provides the first structure of a DNA glycosylase in complex with an inhibitory base lesion that is induced endogenously and that is also induced upon exposure to environmental agents such as vinyl chloride. We identify the primary cause of inhibition as a failure to activate the nucleotide base as an efficient leaving group and demonstrate that the higher binding affinity of AAG for ϵC versus A is achieved through formation of an additional hydrogen bond between Asn-169 in the active site pocket and the O2 ofϵC. This structure provides the basis for the design of AAG inhibitors currently being sought as an adjuvant for cancer chemotherapy.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Mevalonate 5-diphosphate mediates ATP binding to the mevalonate diphosphate decarboxylase from the bacterial pathogen Enterococcus faecalis

The mevalonate pathway produces isopentenyl diphosphate (IPP), a building block for polyisoprenoid synthesis, and is a crucial pathway for growth of the human bacterial pathogen Enterococcus faecalis. The final enzyme in this pathway, mevalonate diphosphate decarboxylase (MDD), acts on mevalonate diphosphate (MVAPP) to produce IPP while consuming ATP. This essential enzyme has been suggested as a therapeutic target for the treatment of drug-resistant bacterial infections. Here, we report functional and structural studies on the mevalonate diphosphate decarboxylase from E. faecalis (MDDEF). The MDDEF crystal structure in complex with ATP (MDDEF–ATP) revealed that the phosphate-binding loop (amino acids 97–105) is not involved in ATP binding and that the phosphate tail of ATP in this structure is in an outward-facing position pointing away from the active site. This suggested that binding of MDDEF to MVAPP is necessary to guide ATP into a catalytically favorable position. Enzymology experiments show that the MDDEF performs a sequential ordered bi-substrate reaction with MVAPP as the first substrate, consistent with the isothermal titration calorimetry (ITC) experiments. On the basis of ITC results, we propose that this initial prerequisite binding of MVAPP enhances ATP binding. In summary, our findings reveal a substrate-induced substrate-binding event that occurs during the MDDEF-catalyzed reaction. The disengagement of the phosphate-binding loop concomitant with the alternative ATP-binding configuration may provide the structural basis for antimicrobial design against these pathogenic enterococci.

59 BASIC BIOLOGICAL SCIENCES↗

HOW TO IDENTIFY AND SEPARATE BRIGHT GALAXY CLUSTERS FROM THE LOW-FREQUENCY RADIO SKY

In this work, we simulate the 50-200 MHz radio sky that is constrained in the field of view (5{sup 0} radius) of the 21 Centimeter Array (21CMA), a low-frequency radio interferometric array constructed in the remote area of Xinjiang, China, by carrying out Monte Carlo simulations to model the strong contaminating foreground of the redshifted cosmological reionization signals, including emissions from our Galaxy, galaxy clusters, and extragalactic discrete sources (i.e., star-forming galaxies, radio-quiet active galactic nuclei (AGNs), and radio-loud AGNs). As an improvement over previous works, we consider in detail not only random variations of morphological and spectroscopic parameters within the ranges allowed by multi-band observations, but also the evolution of radio halos in galaxy clusters, assuming that relativistic electrons are re-accelerated in the intracluster medium (ICM) in merger events and lose energy via both synchrotron emission and inverse Compton scattering with cosmic microwave background photons. By introducing a new approach designed on the basis of independent component analysis and wavelet detection algorithm, we prove that, with a cumulative observation of one month with the 21CMA array, about 80% of galaxy clusters (37 out of 48 clusters assuming a mean magnetic field of B = 2 {mu}G in the ICM, or 15 out of 18 clusters assuming B = 0.2 {mu}G) with central brightness temperatures of >10 K at 65 MHz can be safely identified and separated from the overwhelmingly bright foreground. By examining the brightness temperature images and spectra extracted from these identified clusters, we find that the morphological and spectroscopic distortions are extremely small compared to the input simulated clusters, and the reduced {chi}{sup 2} of brightness temperature profiles and spectra are controlled to be {approx}<0.5 and {approx}<1.3, respectively. These results robustly indicate that in the near future a sample of dozens of bright galaxy clusters will be disentangled from the foreground in 21CMA observations, the study of which will greatly improve our knowledge about cluster merger rates, electron acceleration mechanisms in cluster radio halos, and magnetic field in the ICM.

79 ASTRONOMY AND ASTROPHYSICS↗

Nonadditivity and anisotropy of the polarizability of clusters: Relativistic finite-field calculations for the Xe dimer

We present all-electron relativistic studies of the polarizability properties of the Xe dimer. The studies rely on finite-field calculations of the dimer energies obtained by ab initio methods including electron correlations. An extended set of basis functions is designed in order to ensure a high accuracy of the calculations. Particular attention is paid to the analysis of the nonadditivity and anisotropy of the polarizability of the dimer. It is found that the polarizability of the dimer relative to that of the atoms can be accurately described analytically, at least for internuclear distances around and larger than the equilibrium distance of the dimer.

74 ATOMIC AND MOLECULAR PHYSICS↗

Optically levitating dielectrics in the quantum regime: Theory and protocols

We provide a general quantum theory to describe the coupling of light with the motion of a dielectric object inside a high-finesse optical cavity. In particular, we derive the total Hamiltonian of the system as well as a master equation describing the state of the center-of-mass mode of the dielectric and the cavity-field mode. In addition, a quantum theory of elasticity is used to study the coupling of the center-of-mass motion with internal vibrational excitations of the dielectric. This general theory is applied to the recent proposal of using an optically levitating nanodielectric as a cavity optomechanical system [see Romero-Isart et al., New J. Phys. 12, 033015 (2010); Chang et al., Proc. Natl. Acad. Sci. USA 107, 1005 (2010)]. On this basis, we also design a light-mechanics interface to prepare non-Gaussian states of the mechanical motion, such as quantum superpositions of Fock states. Finally, we introduce a direct mechanical tomography scheme to probe these genuine quantum states by time-of- flight experiments.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

High-luminosity meV-resolution single-shot hard X-ray spectrograph for cavity-based X-ray free-electron lasers

Cavity-based X-ray free-electron lasers (CBXFELs) represent a possible realization of fully coherent hard X-ray sources having high spectral brilliance along with a narrow spectral bandwidth of ∼1–50 meV, a high repetition pulse rate of ∼1 MHz, and good stability. A diagnostic tool is required to measure CBXFEL spectra with meV resolution and high luminosity on a shot-to-shot basis. We have designed a high-luminosity single-shot hard X-ray spectrograph that images 9.831 keV X-rays in a ∼200 meV spectral window with a spectral resolution of a few meV. The spectrograph is designed around angular dispersion of X-rays in Bragg diffraction from crystals. It operates close to design specifications, exhibiting a linear dispersion rate of ∼1.4 µm meV −1 and a ∼200 meV window of high-fidelity spectral imaging. The experimentally demonstrated spectral resolution is ∼20 meV; this resolution is twice as low as expected from theory primarily because the spectrograph is highly sensitive to crystal angular instabilities. The experiment was performed at the bending magnet X-ray optics testing beamline 1-BM at the Advanced Photon Source.

Bragg diffraction↗

Endogenizing Probabilistic Resource Adequacy Risks in Deterministic Capacity Expansion Models

In this work, we demonstrate how power system capacity expansion models can understate the stochastic effects of thermal outages when considering resource availabilities on an hourly expected value basis, yielding system designs with multiple orders of magnitude more shortfall risk than stated adequacy targets. We develop a novel approximation approach to efficiently endogenize awareness of this risk in a deterministic, linear capacity expansion framework. We compare this approach to exogenous tuning of an energy reserve margin, the leading alternative method to compensate for unmodeled probabilistic shortfall risk. Empirical results from a test system show that the new endogenous method cost-effectively meets all regional reliability targets with a single optimization solve, and produces a near-identical system design as the incumbent method without the need for repeated re-optimizations to find an appropriate reserve level. The endogenous method may also use iterative re-optimizations to further improve solution quality, although these incremental benefits were modest in the system studied.

capacity expansion modeling↗

Modeling and Analysis of a Novel Offshore Binary Species Free-Floating Longline Macroalgal Farming System

The investigation of innovative macroalgal cultivation is important and needed to optimize farming operations, increase biomass production, reduce the impact on the ecosystem, and lower system and operational costs. However, most macroalgal farming systems (MFSs) are stationary, which need to occupy a substantial coastal area, require extensive investment in farm infrastructure, and cost high fertilizer and anchoring expenses. This study aims to model, analyze, and support a novel binary species free-floating longline macroalgal cultivation concept. The expected outcomes could provide a basis for the design and application of the novel MFS to improve biomass production, decrease costs, and reduce the impact on the local ecosystem. In this paper, Saccharina latissima and Nereocystis luetkeana were modeled and validated, and coupled with longline to simulate the binary species MFS free float in various growth periods and associated locations along the US west coast. Further, the numerical predictions indicated the possibility of failure on the longline and breakage at the kelp holdfasts is low. However, the large forces due to an instantaneous change in dynamic loads caused by loss of hydrostatic buoyancy when the longline stretches out of the water would damage the kelps. Buoy-longline contact interactions could damage the buoy, resulting in the loss of the system by sinking. Furthermore, the kelp-longline and kelp-kelp entanglements could potentially cause kelp damage.

59 BASIC BIOLOGICAL SCIENCES↗

Devices for Diagnostics and Lithium Collection on the T-11M and T-10 Tokamaks. First Results

The use of lithium as a material of the tokamak in-vessel plasma-facing components made it necessary to develop appropriate diagnostic instruments. For the T-10 and T-11M tokamaks, devices have been developed that allow one to investigate the processes of lithium transport in the tokamak scrape-off layer, the dynamics of lithium deposition at different temperatures of the collecting surface in real time by using a piezoelectric quartz detector, adsorption and desorption of the plasma-forming gas by lithium, and the influence of the electric field on the process of lithium collection. The plasma parameters are monitored using Langmuir probes. The developed devices can be used to extract lithium deposited on the tokamak vessel wall without breaking vacuum conditions. For these purposes, a gateway and a vacuum input without bellows have been designed on the basis of an innovative liquid-metal coupling.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Water Oxidation Mechanisms of Metal Oxide Catalysts by Vibrational Spectroscopy of Transient Intermediates

Water oxidation is an essential reaction of an artificial photosystem for solar fuel generation because it provides electrons needed to reduce carbon dioxide or protons to a fuel. Earth-abundant metal oxides are among the most attractive catalytic materials for this reaction because of their robustness and scalability, but their efficiency poses a challenge. Knowledge of catalytic surface intermediates gained by vibrational spectroscopy under reaction conditions plays a key role in uncovering kinetic bottlenecks and provides a basis for catalyst design improvements. Recent dynamic infrared and Raman studies reveal the molecular identity of transient surface intermediates of water oxidation on metal oxides. In conclusion, combined with ultrafast infrared observations of how charges are delivered to active sites of the metal oxide catalyst and drive the multielectron reaction, spectroscopic advances are poised to play a key role in accelerating progress toward improved catalysts for artificial photosynthesis.

artificial photosynthesis↗

Reversible domain closure modulates GlnBP ligand binding affinity

Glutamine binding protein (GlnBP) is an Escherichia Coli periplasmic binding protein, which binds and carries glutamine to the inner membrane ATP-binding cassette (ABC) transporter. GlnBP binds the ligand with affinity around 0.1μM measured by isothermal titration calorimetry (ITC) and ligand binding stabilizes protein structure shown by its increase in thermodynamic stability. However, the molecular determinant of GlnBP ligand binding is not known. Electrostatic and hydrophobic interaction between GlnBP and glutamine are critical factors. We propose that the freedome of closure movement is also vital for ligand binding. In order to approve this hypothesis, we generate a series of mutants with different linker length that has different magnitude of domain closure. Mutants show different ligand binding affinity, which indicates that the propensity of domain closure determines the ligand binding affinity. Ligand binding triggers gradual ensemble conformational change. Structural changes upon ligand binding are monitored by combination of small angle x-ray scattering (SAXS) and NMR spectroscopy. Detailed structure characterization of GlnBP contributes to a better understanding of ligand binding and provides the structural basis for biosensor design.

59 BASIC BIOLOGICAL SCIENCES↗

DEDALOS NREL (CRADA Final Report)

Currently High Concentration Photovoltaic (HCPV) terrestrial modules are based on the combination of optic elements that concentrate the sunlight into much smaller GaAs space cells to produce electricity. GaAs cell technology has been well developed for space applications during the last two decades, but the use of GaAs cells under concentrated sunlight in terrestrial applications leaves unanswered questions about performance, durability and reliability. The work to be performed under this CRADA will set the basis for the design of high-performance, durable and reliable HCPV terrestrial modules that will bring down electricity production costs in the next five years.

14 SOLAR ENERGY↗