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NASA NTRS2010

Use of Modal Acoustic Emission to Monitor Damage Progression in Carbon Fiber/Epoxy and Implications for Composite Structures

Broad-band modal acoustic emission (AE) data was used to characterize micromechanical damage progression in uniaxial IM7 and T1000 carbon fiber-epoxy tows and an IM7 composite overwrapped pressure vessel (COPV) subjected to an intermittent load hold tensile stress profile known to activate the Felicity ratio (FR). Damage progression was followed by inspecting the Fast Fourier Transforms (FFTs) associated with acoustic emission events. FFT analysis revealed the occurrence of cooperative micromechanical damage events in a frequency range between 100 kHz and 1 MHz. Evidence was found for the existence of a universal damage parameter, referred to here as the critical Felicity ratio, or Felicity ratio at rupture (FR*), which had a value close to 0.96 for the tows and the COPV tested. The implications of using FR* to predict failure in carbon/epoxy composite materials and related composite components such as COPVs are discussed. Trends in the FFT data are also discussed; namely, the difference between the low and high energy events, the difference between early and late-life events, comparison of IM7 and T1000 damage progression, and lastly, the similarity of events occurring at the onset of significant acoustic emission used to calculate the FR.

Waller, J. M.↗
NASA NTRS2010

Postflight Quiet Stance Stability of Astronauts Following Recovery From a Simulated Fall

INTRODUCTION: Astronauts returning from space flight universally present with postural ataxia. Throughout the Space Shuttle Program, measurement of ataxia has concentrated on sway in the anterior-posterior plane. Implementation of an interdisciplinary pre- and postflight study (Functional Task Test, FTT) designed to evaluate both astronaut postflight functional performance and related physiological changes has allowed the investigation of postural instability by characterizing dynamic stabilographic sway patterns. METHODS: Six astronauts from short-duration (Shuttle) and three from long-duration (ISS) flights were required to recover from a simulated fall. Subjects with eyes open, wearing running shoes lay prone on the floor for 2 minutes and then quickly stood up, maintained a quiet stance for 3 minutes, arms relaxed along the side of the body, and feet comfortably placed on the force plate. Crewmembers were tested twice before flight, on landing day (Shuttle only), and 1, 6, and 30 days after flight. Anterior-posterior (AP) and medial-lateral (ML) center-of-pressure (COP) coordinates were calculated from the ground reaction forces collected at 500 Hz. The 3-minute quiet stance trial was broken into three 1-minute segments for stabilogram diffusion analysis. A mean sway speed (rate of change of COP displacement) was also calculated as an additional postural stability parameter. RESULTS/CONCLUSION: While there was considerable variation, most of crewmembers tested exhibited increased stochastic activity evidenced by larger short-term COP diffusion coefficients postflight in both the AP and ML planes, suggesting significant changes in postural control mechanisms, particularly control of lower limb muscle function. As expected, postural instability of ISS astronauts on the first day postflight was similar to that of Shuttle crewmembers on landing day. Recoveries of stochastic activity and mean sway speed to baseline levels were typically observed by the 30th day postflight for both long-duration and short-duration crewmembers. Dynamic postural stability characteristics obtained in this low-impact study complement the data measured with computerized dynamic posturography.

Reschke, M. F.↗
NASA NTRSDate not supplied

NASA’s Student Airborne Science Activation for Minority Serving Institutions: Inaugural Program, Educational Outcomes, and Lessons Learned

The NASA Student Airborne Science Activation (SaSa) for Minority Serving Institutions (MSIs) held its inaugural summer research program for early career undergraduates interested in the Geosciences. SaSa is a NASA Science Activation funded 8-week summer internship program. Twenty-four first- and second-year undergraduates from MSIs across the U.S. participated in the summer program - June 6 to July 29, 2022. Students had the opportunity to gain hands-on research experience in all components of an airborne science campaign including flying on-board a NASA research aircraft to collect atmospheric measurements. Students conducted independent research projects related to the atmosphere, ocean, and geosciences that feed into NASA’s broader Earth Science Division’s and Decadal Survey goals using air quality, meteorological, and oceanic measurements from surface, airborne, and satellite-based observations. The program split its time between partner institution, University of Maryland Baltimore County and NASA’s Wallops Flight Facility in Wallops Island, Virginia. Students also made site visits at partner institutions, including: Hampton University, University of Maryland Eastern Shore, Morgan State University, Howard University, and Coppin State University and attended lectures from visiting faculty and NASA Subject Matter Experts. Students were guided on their research projects by near-peer graduate mentors, SaSa program leadership, co-Is at partner institutions, and NASA scientists to address two major research themes: 1) how human-caused air pollution has human and environmental implications, and 2) how large-scale meteorological factors influence local weather conditions. Students sorted into research groups, based on sub-discipline areas in the Geosciences, including: “Clouds, Aerosols and Radiation”, “Meteorology and Planetary Boundary Layer”, “Air Quality: Particle Pollution and Trace Gases”, and “Air-Water-Land Interface”. Their research was presented as 3-minute lightning talks and in-person poster presentations at a close-out event at NASA Goddard Space Flight Center in Greenbelt, Maryland. The students’ inter- and trans-disciplinary research experiences centered in the use of multiple ground, airborne, and satellite remote sensing NASA Earth Science Division assets. Providing a unique experience aligned to recognize the societal benefits that NASA contributes in the areas of resource management, air quality monitoring and policy decisions, energy and weather predictions, and research on the Earth’s climate. The SaSa program aims to increase the number of students from MSIs that identify as underrepresented or underserved individuals in the Geosciences discipline, Earth System Science graduate programs, and the NASA workforce. A summary of the summer research program, educational, scientific, and programmatic outcomes, as well as lessons learned will be presented.

NASA↗
NASA NTRSDate not supplied

Neuro-Vestibular Examination During and Following Spaceflight (Vestibular Health)

BACKGROUND Adaptation to microgravity during spaceflight causes neurological disturbances that are either directly or indirectly mediated by the vestibular system. These disturbances can include space motion sickness, spatial disorientation, and cognitive impairment, as well as changes in head-eye coordination, vestibulo-ocular reflexes, and control of posture and locomotion. Otolith-mediated reflex gains appear to adapt rapidly during spaceflight and after landing. However, animal studies have shown that structural modifications of the vestibular sensory apparatus develop during long-duration spaceflight. To date, no studies have characterized the severity of vestibular syndromes experienced by astronauts as a function of the duration of spaceflight or whether the effects are caused by changes at the peripheral end organs, midbrain, cerebellum, or vestibular cortex. OBJECTIVES We are investigating temporal vestibular changes in crewmembers of short, 6-month, and one-year missions to identify trends in adaptation of vestibular health and performance in orbit and after landing. We are also differentiating between peripheral and central vestibular forms of vertigo and oculomotor disorders. METHODS Recordings of eye, head, and body movements, as well as subjective reports of perception of motion, are being used to determine the presence of abnormal eye movements, dysmetria, motion sickness symptoms, and illusions of motion during head or body movements. This includes characterization of temporal trends in central compensation for vestibular (otolith) asymmetry. In-flight examinations are being performed early in the mission (Flight Days 1 and 30) and once every 2-3 months thereafter. Postflight examinations are performed after return (R) from the mission on R+0, R+4, R+9, and R+30. The inflight and postflight motion sickness questionnaires are customized to support data sharing across related studies. Ground-based control testing has been performed on healthy volunteers(18 females, 14 males;38.6 ± 9.2 years) in the laboratory to estimate mean normative responses, and on patients with bilateral vestibulopathy (BVP) (17 females, 13 males; 60.6 ± 13.0 years) at the University of Caen. RESULTS As of September 2024, two crewmembers have completed all preflight, inflight, and postflight testing. Additional crewmembers are currently enrolled and data collection is currently ongoing. For ground testing, BVP patients performed similarly to previous postflight astronauts on R+0 in various walking performance tasks. Three additional body movement perception tasks have been tested. For the Triangle Completion Task, BVP patients had a larger mean angle of deviation and longer mean distance than healthy controls. For the Self-Rotation Task and Distance Perception Task, BVP patients had larger errors than healthy controls. These data suggest that vestibular deficiencies impact all aspects of body movement perception tested; whereas previous studies suggest that vestibular deficiencies are only associated with directional errors, not with overall trajectories/path lengths. These data will be compared to those of crewmembers during early postflight readaptation. RELEVANCE If the observed symptoms in crewmembers are more deleterious after the year-long missions than those documented after 6-month missions, then relevant countermeasures will be required to maintain the health and operational performance of astronauts during longer missions. Depending on the etiology of the vestibular syndrome revealed by these tests, countermeasures will be proposed based on vestibular rehabilitation therapies currently used in patients with vestibular disorders, such as habituation, gaze stabilization, and/or balance training exercises. ACKNOWLEDGEMENT This work is supported by NASA’s Human Research Program Human Health Countermeasures Element.

T R Macaulay↗
NASA NTRS2005

Matlab GUI for a Fluid Mixer

The Test and Engineering Directorate at NASA John C. Stennis Space Center developed an interest to study the modeling, evaluation, and control of a liquid hydrogen (LH2) and gas hydrogen (GH2) mixer subsystem of a ground test facility. This facility carries out comprehensive ground-based testing and certification of liquid rocket engines including the Space Shuttle Main engine. A software simulation environment developed in MATLAB/SIMULINK (M/S) will allow NASA engineers to test rocket engine systems at relatively no cost. In the progress report submitted in February 2004, we described the development of two foundation programs, a reverse look-up application using various interpolation algorithms, a variety of search and return methods, and self-checking methods to reduce the error in returned search results to increase the functionality of the program. The results showed that these efforts were successful. To transfer this technology to engineers who are not familiar with the M/S environment, a four-module GUI was implemented allowing the user to evaluate the mixer model under open-loop and closed-loop conditions. The progress report was based on an udergraduate Honors Thesis by Ms. Jamie Granger Austin in the Department of Electrical Engineering and Computer Science at Tulane University, during January-May 2003, and her continued efforts during August-December 2003. In collaboration with Dr. Hanz Richter and Dr. Fernando Figueroa we published these results in a NASA Tech Brief due to appear this year. Although the original proposal in 2003 did not address other components of the test facility, we decided in the last few months to extend our research and consider a related pressurization tank component as well. This report summarizes the results obtained towards a Graphical User Interface (GUI) for the evaluation and control of the hydrogen mixer subsystem model and for the pressurization tank each taken individually. Further research would combine the two components - mixer and tank, for a more realistic simulation tool.

Barbieri, Enrique↗
NASA NTRSDate not supplied

Mission Design & Operations Approach for the HelioSwarm Mission

HelioSwarm: The Nature of Turbulence in Space Plasmas is a transformational mission to explore the dynamic three-dimensional mechanisms controlling the physics of plasma turbulence, a ubiquitous process occurring in the heliosphere and plasmas throughout the universe. Turbulence is the process by which energy contained in fluctuating magnetic fields and plasma motion cascades from large to smaller spatial scales. HelioSwarm achieves its science goals by making simultaneous measurements across a wide range of measurement baselines, spanning magnetohydrodynamic scales (1000’s of km) to sub-ion heating scales (10’s of km), using a novel nine-spacecraft swarm. The swarm operates in a high-altitude lunar resonant Earth orbit (two-week period, ~63 RE apogee, ~13 RE perigee), giving it access to both the pristine solar wind and regions of strongly driven turbulence (specifically the magnetosphere and foreshock), and utilizes customized relative orbital motion of the swarm members to produce the range of measurement baselines and configurations. The swarm comprises eight “node” spacecraft, manufactured by Blue Canyon Technologies, and a “hub” spacecraft produced by Northrop Grumman Corp. The hub serves as a communications relay, with all communications between the ground and the nodes flowing through it. Mission operations are conducted within the Multi-Mission Operations Center at the NASA Ames Research Center and science operations at the University of New Hampshire, Durham. HelioSwarm was selected in 2022 as one of NASA’s newest Heliophysics Explorer missions to proceed from mission concept into mission implementation, with a target launch in 2029. This paper provides an overview of the mission’s science goals and objectives, the mission design, and the concept of operations, with an emphasis on how the swarm aspects of the mission both enable the science measurements and present unique operational challenges. The paper then describes the proposed development approach for the mission operations system and ground data system which relies on a selective combination of scaling strategies to meet the challenges.

HelioSwarm↗
NASA NTRS1975

Weight optimization methods in space radiation shield design

An empirical relation between proton range and material density is used to examine relations between shield weight, geometry, and material composition for shielding against a space proton environment. The optimum material resulting in minimum shield weight usually lies at the extremes of either the lightest or heaviest materials. Aluminum, which has special prominence in the space program, appears universally suboptimal as a radiation shielding material. Assuming square-box geometry (rectangular prisms with two square faces), the optimum shape for the shielded objects is found to be a cube, although moderate deviations from a cube result in only a small weight penalty.

Wilson, J. W.↗
NASA NTRS1984

The microcomputer workstation - An alternate hardware architecture for remotely sensed image analysis

Difficulties regarding the digital image analysis of remotely sensed imagery can arise in connection with the extensive calculations required. In the past, an expensive large to medium mainframe computer system was needed for performing these calculations. For image-processing applications smaller minicomputer-based systems are now used by many organizations. The costs for such systems are still in the range from $100K to $300K. Recently, as a result of new developments, the use of low-cost microcomputers for image processing and display systems appeared to have become feasible. These developments are related to the advent of the 16-bit microprocessor and the concept of the microcomputer workstation. Earlier 8-bit microcomputer-based image processing systems are briefly examined, and a computer workstation architecture is discussed. Attention is given to a microcomputer workstation developed by Stanford University, and the design and implementation of a workstation network.

Erickson, W. K.↗
NASA NTRS1987

Investigation of air transportation technology at Massachusetts Institute of Technology, 1984

Three projects sponsored by the Joint University Program at MIT are summarized. Two projects were focussed on the potential application of Loran-C in flying nonprecision approaches to general aviation runways, and the third project involved research on aircraft icing. In one Loran-C project, Aircraft Approach Guidance Using Relative Loran-C Navigation, the concept was flight tested. It used the difference in TD's from those of the touchdown point to simplify and speed navigation computer processing and took advantage of the short term accuracy of less than 100 feet for Loran-C. The goal of the project, Probabilistic Modelling of Loran-C Error for Nonprecision Approaches, was to develop a mathematical model which would predict the probability that an approach flown to a runway with a particular Loran-C receiver would fall within a given standard. The Aircraft Icing project focussed on measurement of droplet trajectories and droplet impingement/runback characteristics and measurement of real time ice accretion using ultrasonic pulse echo techniques.

Simpson, Robert W.↗
NASA NTRS1986

Airborne spectrophotometry of P/Halley from 16 to 30 microns

Comet Halley was observed in the 16 to 30 micron region using the Cornell University 7-channel spectrometer (resolution = 0.02) on board the Kuiper Airborne Observatory on 1985 Dec. 14.2. A 30-arcsec aperture (FWHM) was used. Measurements centered on the nuclear condensation micron indicate that if present, the 20 micron silicate feature is very weak, and that a relatively narrow strong feature centered at 28.4 microns possibly exists. However, this feature may be an artifact of incomplete correction for telluric water vapor absorption.

Herter, T.↗
NASA NTRS1990

Estimated accuracy of ground-based liquid water measurements during FIRE

Since on goal of the First ISCCP Regional Experiment (FIRE) project is to improve our understanding of the relationships between cloud microphysics and cloud reflectivity, it is important that the accuracy of remote liquid measurements by microwave radiometry be thoroughly understood. The question is particularly relevant since the uncertainty in the absolute value of the radiometric liquid measurement is greatest at low liquid water contents (less than 0.1 mm). However it should be stressed that although uncertainty exists in the absolute value of liquid, it is well known that the observed radiometric signal is proportional to the amount of liquid in the antenna beam. As a result, changes in amounts of liquid are known to greater accuracy than the absolute value, which may contain a bias. Here, an assessment of the liquid measurement accuracy attained at San Nicolas Island (SNI) is presented. The vapor and liquid water data shown were computed from the radiometric brightness temperatures using statistical retrieval algorithms. The retrieval coefficients were derived from the 69 soundings made by Colorado State University during the SNI observations. Sources of error in the vapor and liquid measurements include cross-talk in the retrieval algorithms (not a factor at low liquid contents), uncertainties in the brightness temperature measurement, and uncertainties in the vapor and liquid attenuation coefficients. The relative importance of these errors is discussed. For the retrieval of path-integrated liquid water, the greatest uncertainty is caused by the temperature dependence of the absorption at microwave frequencies. As a result, the accuracy of statistical retrieval of liquid depends to large measure upon how representative the a priori radiosonde data are of the conditions prevailing during the measurements. The microwave radiometer measurements at SNI were supplemented by an infrared (IR) radiometer modified for measurement of cloud-base temperature. Thus, the IR system provides the means to incorporate continuous measurements of the liquid temperature into the retrieval process.

Snider, Jack B.↗
NASA NTRS1991

NASA/SPAN and DOE/ESnet-DECnet transition strategy for DECnet OSI/phase 5

The technical issues are examined involved with the transition of very large DECnet networks from DECnet phase IV protocols to DECnet OSI/Phase V protocols. The networks involved are the NASA's Science Internet (NSI-DECnet) and the DOE's Energy Science network (ESnet-DECnet). These networks, along with the many universities and research institutions connected to them, combine to form a single DECnet network containing more than 20,000 transitions and crossing numerous organizational boundaries. Discussion of transition planning, including decisions about Phase V naming, addressing, and routing are presented. Also discussed are transition issues related to the use of non-DEC routers in the network.

Porter, Linda↗
NASA NTRS1995

Universities Earth System Scientists Program

This document constitutes the final technical report for the National Aeronautics and Space Administration (NASA) Grant NAGW-3172. This grant was instituted to provide for the conduct of research under the Universities Space Research Association's (USRA's) Universities Earth System Scientist Program (UESSP) for the Office of Mission to Planet Earth (OMTPE) at NASA Headquarters. USRA was tasked with the following requirements in support of the Universities Earth System Scientists Programs: (1) Bring to OMTPE fundamental scientific and technical expertise not currently resident at NASA Headquarters covering the broad spectrum of Earth science disciplines; (2) Conduct basic research in order to help establish the state of the science and technological readiness, related to NASA issues and requirements, for the following, near-term, scientific uncertainties, and data/information needs in the areas of global climate change, clouds and radiative balance, sources and sinks of greenhouse gases and the processes that control them, solid earth, oceans, polar ice sheets, land-surface hydrology, ecological dynamics, biological diversity, and sustainable development; (3) Evaluate the scientific state-of-the-field in key selected areas and to assist in the definition of new research thrusts for missions, including those that would incorporate the long-term strategy of the U.S. Global Change Research Program (USGCRP). This will, in part, be accomplished by study and evaluation of the basic science needs of the community as they are used to drive the development and maintenance of a global-scale observing system, the focused research studies, and the implementation of an integrated program of modeling, prediction, and assessment; and (4) Produce specific recommendations and alternative strategies for OMTPE that can serve as a basis for interagency and national and international policy on issues related to Earth sciences.

Estes, John E.↗
NASA NTRS1997

Global Positioning System Antenna Fixed Height Tripod Adapter

An improved Global Positioning em antenna adaptor allows fixed antenna height measurements by removably attaching an adaptor plate to a conventional surveyor's tripod. Antenna height is controlled by an antenna boom which is a fixed length rod. The antenna is attached to one end of the boom. The opposite end of the boom tapers to a point sized to fit into a depression at the center of survey markers. The boom passes through the hollow center of a universal ball joint which is mounted at the center of the adaptor plate so that the point of the rod can be fixed in the marker's central depression. The mountains of the ball joint allow the joint to be moved horizontally in any direction relative to the tripod. When the ball joint is moved horizontally, the angle between the boom and the vertical changes because the boom's position is fixed at its lower end. A spirit level attached to the rod allows an operator to determine when the boom is plumb. The position of the ball joint is adjusted horizontally until the boom is plumb. At that time the antenna is positioned exactly over the center of the monument and the elevation of the antenna is precisely set by the length of the boom.

Dinardo, Steven J.↗
NASA NTRS1999

Effects of Cabin Upsets on Adsorption Columns for Air Revitalization

The National Aeronautics and Space Administration (NASA) utilizes adsorption technology as part of contaminant removal systems designed for long term missions. A variety of trace contaminants can be effectively removed from gas streams by adsorption onto activated carbon. An activated carbon adsorption column meets NASA's requirements of a lightweight and efficient means of controlling trace contaminant levels aboard spacecraft and space stations. The activated carbon bed is part of the Trace Contaminant Control System (TCCS) which is utilized to purify the cabin atmosphere. TCCS designs oversize the adsorption columns to account for irregular fluctuations in cabin atmospheric conditions. Variations in the cabin atmosphere include changes in contaminant concentrations, temperature, and relative humidity. Excessively large deviations from typical conditions can result from unusual crew activity, equipment malfunctions, or even fires. The research carried out under this award focussed in detail on the effects of cabin upsets on the performance of activated carbon adsorption columns. Both experiments and modeling were performed with an emphasis on the roll of a change in relative humidity on adsorption of trace contaminants. A flow through fixed-bed apparatus was constructed at the NASA Ames Research Center, and experiments were performed there by W. Scot Appel under the direction of Dr. John E. Finn. Modeling work was performed at the University of Virginia and at Vanderbilt University by W. Scot Appel under the direction of M. Douglas LeVan. All three participants collaborated in all of the various phases of the research. The most comprehensive document describing the research is the Ph.D. dissertation of W. Scot Appel. Results have been published in several papers and presented in talks at technical conferences. All documents have been transmitted to Dr. John E. Finn.

LeVan, M. Douglas↗
NASA NTRS2005

Advanced Development Projects for Constellation From The Next Generation Launch Technology Program Elements

When United States President George W. Bush announced the Vision for Space Exploration in January 2004, twelve propulsion and launch system projects were being pursued in the Next Generation Launch Technology (NGLT) Program. These projects underwent a review for near-term relevance to the Vision. Subsequently, five projects were chosen as advanced development projects by NASA s Exploration Systems Mission Directorate (ESMD). These five projects were Auxiliary Propulsion, Integrated Powerhead Demonstrator, Propulsion Technology and Integration, Vehicle Subsystems, and Constellation University Institutes. Recently, an NGLT effort in Vehicle Structures was identified as a gap technology that was executed via the Advanced Development Projects Office within ESMD. For all of these advanced development projects, there is an emphasis on producing specific, near-term technical deliverables related to space transportation that constitute a subset of the promised NGLT capabilities. The purpose of this paper is to provide a brief description of the relevancy review process and provide a status of the aforementioned projects. For each project, the background, objectives, significant technical accomplishments, and future plans will be discussed. In contrast to many of the current ESMD activities, these areas are providing hardware and testing to further develop relevant technologies in support of the Vision for Space Exploration.

Huebner, Lawrence D.↗
NASA NTRS2016

Torrefaction Processing for Human Solid Waste Management

This study involved a torrefaction (mild pyrolysis) processing approach that could be used to sterilize feces and produce a stable, odor-free solid product that can be stored or recycled, and also to simultaneously recover moisture. It was demonstrated that mild heating (200-250 C) in nitrogen or air was adequate for torrefaction of a fecal simulant and an analog of human solid waste (canine feces). The net result was a nearly undetectable odor (for the canine feces), complete recovery of moisture, some additional water production, a modest reduction of the dry solid mass, and the production of small amounts of gas and liquid. The liquid product is mainly water, with a small Total Organic Carbon content. The amount of solid vs gas plus liquid products can be controlled by adjusting the torrefaction conditions (final temperature, holding time), and the current work has shown that the benefits of torrefaction could be achieved in a low temperature range (< 250 C). These temperatures are compatible with the PTFE bag materials historically used by NASA for fecal waste containment and will reduce the energy consumption of the process. The solid product was a dry material that did not support bacterial growth and was hydrophobic relative to the starting material. In the case of canine feces, the solid product was a mechanically friable material that could be easily compacted to a significantly smaller volume (approx. 50%). The proposed Torrefaction Processing Unit (TPU) would be designed to be compatible with the Universal Waste Management System (UWMS), now under development by NASA. A stand-alone TPU could be used to treat the canister from the UWMS, along with other types of wet solid wastes, with either conventional or microwave heating. Over time, a more complete integration of the TPU and the UWMS could be achieved, but will require design changes in both units.

Serio, Michael A.↗
NASA NTRS2001

Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach

The utility of a high-density oligonucleotide microarray (microchip) for identifying strains of five closely related bacilli (Bacillus anthracis, Bacillus cereus, Bacillus mycoides, Bacillus medusa and Bacillus subtilis) was demonstrated using an approach that compares the non-equilibrium dissociation rates ('melting curves') of all probe-target duplexes simultaneously. For this study, a hierarchical set of 30 oligonucleotide probes targeting the 16S ribosomal RNA of these bacilli at multiple levels of specificity (approximate taxonomic ranks of domain, kingdom, order, genus and species) was designed and immobilized in a high-density matrix of gel pads on a glass slide. Reproducible melting curves for probes with different levels of specificity were obtained using an optimized salt concentration. Clear discrimination between perfect match (PM) and mismatch (MM) duplexes was achieved. By normalizing the signals to an internal standard (a universal probe), a more than twofold discrimination (> 2.4x) was achieved between PM and 1-MM duplexes at the dissociation temperature at which 50% of the probe-target duplexes remained intact. This provided excellent differentiation among representatives of different Bacillus species, both individually and in mixtures of two or three. The overall pattern of hybridization derived from this hierarchical probe set also provided a clear 'chip fingerprint' for each of these closely related Bacillus species.

Non-NASA Center↗