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At least 919 records · Page 51

Threat Reduction Research Networks: Fostering Sustainable Collaborations Through Trainings for Genomics for Biosurveillance

Scientific research communities can be represented as heterogeneous or multidimensional networks encompassing multiple types of entities and relationships. These networks might include researchers, institutions, meetings, and publications, connected by relationships like authorship, employment, and attendance. We describe a method for efficiently and flexibly capturing, storing, and extracting information from multidimensional scientific networks using a graph database. The database structure is based on an ontology that captures allowable types of entities and relationships. This allows us to construct a variety of projections of the underlying multidimensional graph through database queries to answer specific research questions. We demonstrate this process through a study of the U.S. Biological Threat Reduction Program (BTRP), which seeks to develop Threat Reduction Networks to build and strengthen a sustainable international community of biosecurity, biosafety, and biosurveillance experts to address shared biological threat reduction challenges. Networks like these create connectional intelligence among researchers and institutions around the world, and are central to the concept of cooperative threat reduction. Our analysis focuses on a series of seven BTRP genome sequencing training workshops, showing how they created a growing network of participants and countries over time, which is also reflected in coauthorship relationships among attendees. By capturing concept and relationship hierarchies, our ontology-based approach allows us to pose general or specific questions about networks within the same framework. This approach can be applied to other research communities or multidimensional social networks to capture, analyze, and visualize different types of interactions and how they change over time.

59 BASIC BIOLOGICAL SCIENCES↗

Blending Pipeline Analysis Tool for Hydrogen (BlendPATH) Documentation and User Manual

The Blending Pipeline Analysis Tool for Hydrogen (BlendPATH) is a flexible, open-source Python tool designed to provide users with case-by-case analysis capabilities to identify the necessary modifications to repurpose existing natural gas transmission pipeline networks to transport hydrogen as a blend of a user-specified volume fraction of hydrogen or as a pure stream and to estimate the associated capital and operating expenditures resulting from those modifications. This tool is intended to be applied during the initial screening stage of a prospective project when pipeline developers compile transmission pipeline technical documentation and history but prior to performing detailed pipeline inspections. Performing analysis with BlendPATH during this initial screening stage can provide the user with an understanding of promising opportunities and probable economic outcomes of repurposing their pipeline network for hydrogen before proceeding with detailed pipeline materials testing and pipeline inspections. BlendPATH consists of multiple modules to simulate, assess, and modify existing natural gas transmission pipeline network designs to be compatible with hydrogen as a blend or pure stream. The tool employs an open-source gas network hydraulic model to simulate existing, user-specified transmission pipeline networks, and it applies ASME B31.12 to assess the pipe segments within these networks for compatibility with hydrogen and to modify the networks to achieve compatibility where the existing infrastructure is inadequate. Users can specify ASME B31.12 design options for pipeline assessment and can select from multiple methods for pipeline modification. This report details the functionalities of BlendPATH Version 2.0.2 and demonstrates an example of applying BlendPATH to a case study. Potential and intended users of this framework include natural gas pipeline developers and operators and researchers at both public and private institutions. BlendPATH is publicly available at https://github.com/NREL/BlendPATH.

08 HYDROGEN↗

Transfer learning for analysis of collective and non-collective Thomson scattering spectra

Thomson scattering (TS) diagnostics provide reliable, minimally perturbative measurements of fundamental plasma parameters, such as electron density (⁠n e ) and electron temperature (⁠T e ⁠). Deep neural networks can provide accurate estimates of ⁠n e and T e when conventional fitting algorithms may fail, such as when TS spectra are dominated by noise, or when fast analysis is required for real-time operation. Although deep neural networks typically require large training sets, transfer learning can improve model performance on a target task with limited data by leveraging pre-trained models from related source tasks, where select hidden layers are further trained using target data. We present five architecturally diverse deep neural networks, pre-trained on synthetic TS data and adapted for experimentally measured TS data, to evaluate the efficacy of transfer learning in estimating n e and T e in both the collective and non-collective scattering regimes. We evaluate errors in n e and T e estimates as a function of training set size for models trained with and without transfer learning, and we observe decreases in model error from transfer learning when the training set contains ≲ 200 experimentally measured spectra.

Artificial neural networks↗

Stability Analysis of Parallel Connected Bidirectional WPT System

This paper presents a stability analysis of parallel-connected bi-directional series-series resonant network wireless power transfer (WPT), optimized for Electric Vehicle (EV) charging and vehicle-to-grid (V2G) applications. The study addresses critical stability challenges in systems integrated with diverse distributed energy resources (DERs), including photovoltaics, fuel cells, wind turbines, energy storage systems, and the AC grid. The stability of such integrated DC grid systems is paramount for ensuring reliable operation, particularly under varying power flow conditions and dynamic interactions between parallel WPT systems. The analysis included system impedance characterization, state-space modeling, and open and closed-loop stability evaluations. The results demonstrated that the integration of a robust control architecture effectively mitigates instability risks and supports scalable, efficient operation. This work underscores the converter's adaptability and its potential for large-scale deployment in wireless EV charging infrastructures and integrated DC grid systems.

Asa, Erdem [ORNL] (ORCID:0000000190884812)↗

Computational Aspects of Single-Molecule Kinetics for Coupled Catalytic Cycles: A Spectral Analysis

Catalysis from single active sites is analyzed using methods developed from single molecule kinetics. Using a stochastic Markov state description, the observable properties of general catalytic networks of reactions are expressed using an eigenvalue decomposition of the transition matrix for the Markov process. By the use of a sensitivity analysis, the necessary eigenvalues and eigenvectors are related to the energies of controlling barriers and wells located along the reaction routes. A generalization of the energetic span theory allows the eigenvalues to be computed from several activation energies corresponding to distinct barrier-well pairings. The formalism is demonstrated accurately for model problems for a physically realistic mechanism for an alkene hydrogenation reaction on a single atom catalyst.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Hierarchical Convolutional Neural Networks for Event Classification on PMU Measurements

Event classification is one of the central components of automated disturbance analysis based on PMU measurements. Obtaining high-quality event labels remains a challenge for supervised learning-based classification of local and system-wide events in power grids due to its labor-intensive requirement. We present a sensitivity study considering rapidly refined, partially and fully inspected event labels that leads to evidence that hierarchical convolutional neural networks (HCNNs) outperform traditional classification models regardless of the quality of the available event labels. Furthermore, it is demonstrated that performance similar to the one obtained using entirely domain-driven labeling can be achieved as long as the involved expert does not mislabel more than ~5% of the event data captured by PMU measurements.

47 OTHER INSTRUMENTATION↗

Statistical Analysis of Inter-Area Oscillations in the U.S. Eastern Interconnection: A 2017-2023 Perspective

Recent advancements and the accumulation of high-resolution, long-term phasor measurement unit (PMU) data have provided detailed insights into inter-area oscillations in power grids. This study conducts a comprehensive statistical analysis of inter-area oscillations within the United States Eastern Interconnection from 2017 to 2023. Utilizing data captured by the advanced wide-area Frequency Monitoring Network (FNET/GridEye), this investigation examines the occurrence patterns, dominant frequencies, damping ratios, and excitation mechanisms of these oscillations. Our analysis sheds light on the evolving statistical behaviors of inter-area oscillations, offering updated and critical information for grid operators and planners. The insights gained from this study can be instrumental in enhancing the operational resilience of the power network and guiding strategic developments in grid infrastructure to accommodate future challenges. Additionally, the study discusses emerging challenges associated with the modernization of the power grid, including increased renewable penetration, dynamic load variability, and cyber-physical vulnerabilities that complicate oscillation monitoring and control.

Inter-area oscillations↗

Neumann Series Based Voltage Sensitivity Analysis for Three Phase Distribution System

In this letter, a simplified voltage sensitivity analysis technique that can provide accurate estimates of voltage change across the network for a given change in bus power injections in a three-phase unbalanced distribution network is proposed. This technique is derived from the first-order approximation of the Neumann series, which allows maintaining the accuracy of the solution while the computational effort is reduced. Here, the proposed technique is tested on a 559-bus unbalanced distribution system with multiple distributed generation resources. The results show that the average error in the voltage estimates with the proposed method is not more than 0.3% with the execution time of similar order relative to the state-of-the-art sensitivity analysis methods.

42 ENGINEERING↗

HyBlend Collaborative Research Partnership (CRADA Final Report)

This agreement assembles a multi-lab, multi-industry team to address high-priority research topics related to the blending of hydrogen (H2) into the U.S. natural gas (NG) pipeline network. There are four main research objectives: 1. Compatibility of metals (SNL) – Develop general principles for operation of HyBlend™ delivery systems in the context of structural integrity and assess the role of gas impurities on degradation of metal pipelines. 2. Compatibility of polymers (PNNL) – Assess gas impurities in HyBlend for polymer pipeline degradation and lifetime predictions. 3. Life cycle analysis (LCA) (ANL) – Analyze the life cycle of technology pathways for hydrogen and NG blends, as well as alternative pathways. 4.Techno-economic analysis (TEA) (NREL) – Quantify the costs and opportunities for hydrogen production and blending with the NG network, as well as alternative pathways.

08 HYDROGEN↗

Ensemble learning-iterative training machine learning for uncertainty quantification and automated experiment in atom-resolved microscopy

Deep learning has emerged as a technique of choice for rapid feature extraction across imaging disciplines, allowing rapid conversion of the data streams to spatial or spatiotemporal arrays of features of interest. However, applications of deep learning in experimental domains are often limited by the out-of-distribution drift between the experiments, where the network trained for one set of imaging conditions becomes sub-optimal for different ones. This limitation is particularly stringent in the quest to have an automated experiment setting, where retraining or transfer learning becomes impractical due to the need for human intervention and associated latencies. Here we explore the reproducibility of deep learning for feature extraction in atom-resolved electron microscopy and introduce workflows based on ensemble learning and iterative training to greatly improve feature detection. This approach allows incorporating uncertainty quantification into the deep learning analysis and also enables rapid automated experimental workflows where retraining of the network to compensate for out-of-distribution drift due to subtle change in imaging conditions is substituted for human operator or programmatic selection of networks from the ensemble. This methodology can be further applied to machine learning workflows in other imaging areas including optical and chemical imaging.

36 MATERIALS SCIENCE↗

Electron energy loss spectroscopy database synthesis and automation of core-loss edge recognition by deep-learning neural networks

Abstract The ionization edges encoded in the electron energy loss spectroscopy (EELS) spectra enable advanced material analysis including composition analyses and elemental quantifications. The development of the parallel EELS instrument and fast, sensitive detectors have greatly improved the acquisition speed of EELS spectra. However, the traditional way of core-loss edge recognition is experience based and human labor dependent, which limits the processing speed. So far, the low signal–noise ratio and the low jump ratio of the core-loss edges on the raw EELS spectra have been challenging for the automation of edge recognition. In this work, a convolutional-bidirectional long short-term memory neural network (CNN-BiLSTM) is proposed to automate the detection and elemental identification of core-loss edges from raw spectra. An EELS spectral database is synthesized by using our forward model to assist in the training and validation of the neural network. To make the synthesized spectra resemble the real spectra, we collected a large library of experimentally acquired EELS core edges. In synthesize the training library, the edges are modeled by fitting the multi-Gaussian model to the real edges from experiments, and the noise and instrumental imperfectness are simulated and added. The well-trained CNN-BiLSTM network is tested against both the simulated spectra and real spectra collected from experiments. The high accuracy of the network, 94.9%, proves that, without complicated preprocessing of the raw spectra, the proposed CNN-BiLSTM network achieves the automation of core-loss edge recognition for EELS spectra with high accuracy.

36 MATERIALS SCIENCE↗

Automated prediction of lattice parameters from X-ray powder diffraction patterns

A key step in the analysis of powder X-ray diffraction (PXRD) data is the accurate determination of unit-cell lattice parameters. This step often requires significant human intervention and is a bottleneck that hinders efforts towards automated analysis. This work develops a series of one-dimensional convolutional neural networks (1D-CNNs) trained to provide lattice parameter estimates for each crystal system. A mean absolute percentage error of approximately 10% is achieved for each crystal system, which corresponds to a 100- to 1000-fold reduction in lattice parameter search space volume. The models learn from nearly one million crystal structures contained within the Inorganic Crystal Structure Database and the Cambridge Structural Database and, due to the nature of these two complimentary databases, the models generalize well across chemistries. A key component of this work is a systematic analysis of the effect of different realistic experimental non-idealities on model performance. It is found that the addition of impurity phases, baseline noise and peak broadening present the greatest challenges to learning, while zero-offset error and random intensity modulations have little effect. However, appropriate data modification schemes can be used to bolster model performance and yield reasonable predictions, even for data which simulate realistic experimental non-idealities. In order to obtain accurate results, a new approach is introduced which uses the initial machine learning estimates with existing iterative whole-pattern refinement schemes to tackle automated unit-cell solution.

42 ENGINEERING↗

Super resolution convolutional neural network for feature extraction in spectroscopic data

Two dimensional (2D) peak finding is a common practice in data analysis for physics experiments, which is typically achieved by computing the local derivatives. However, this method is inherently unstable when the local landscape is complicated or the signal-to-noise ratio of the data is low. In this work, we propose a new method in which the peak tracking task is formalized as an inverse problem, which thus can be solved with a convolutional neural network (CNN). In addition, we show that the underlying physics principle of the experiments can be used to generate the training data. By generalizing the trained neural network on real experimental data, we show that the CNN method can achieve comparable or better results than traditional derivative based methods. This approach can be further generalized in different physics experiments when the physical process is known.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Coupling flux balance analysis with reactive transport modeling through machine learning for rapid and stable simulation of microbial metabolic switching

Integrating genome-scale metabolic networks with reactive transport models (RTMs) provides a detailed description of the dynamic changes in microbial growth and metabolism. Despite promising demonstrations in the past, computational inefficiency has been pointed out as a critical issue to overcome because it requires repeated application of linear programming (LP) to obtain flux balance analysis (FBA) solutions in every time step and spatial grid. To address this challenge, we propose a new simulation method where we train and validate artificial neural networks (ANNs) using randomly sampled FBA solutions and incorporate the resulting surrogate FBA model (represented as algebraic equations) into RTMs as source/sink terms. We demonstrate the efficiency of our method via a case study of Shewanella oneidensis MR-1. During aerobic growth on lactate, S. oneidensis produces metabolic byproducts (such as pyruvate and acetate), which are subsequently consumed as alternative carbon sources when the preferred nutrients are depleted. To effectively simulate these complex dynamics, we used a cybernetic approach that models metabolic switches as the outcome of dynamic competition among multiple growth options. In both zero-dimensional batch and one-dimensional column configurations, the ANN-based surrogate models achieved substantial reduction of computational time by several orders of magnitude compared to the original LP-based FBA models. Moreover, the ANN models produced robust solutions without any special measures to prevent numerical instability. These developments significantly promote our ability to utilize genome-scale networks in complex, multi-physics, and multi-dimensional ecosystem modeling.

59 BASIC BIOLOGICAL SCIENCES↗

Model validation and selection in metabolic flux analysis and flux balance analysis

13C-Metabolic Flux Analysis (13C-MFA) and Flux Balance Analysis (FBA) are widely used to investigate the operation of biochemical networks in both biological and biotechnological research. Both methods use metabolic reaction network models of metabolism operating at steady state so that reaction rates (fluxes) and the levels of metabolic intermediates are constrained to be invariant. They provide estimated (MFA) or predicted (FBA) values of the fluxes through the network in vivo, which cannot be measured directly. These fluxes can shed light on basic biology and have been successfully used to inform metabolic engineering strategies. Several approaches have been taken to test the reliability of estimates and predictions from constraint-based methods and to compare alternative model architectures. Despite advances in other areas of the statistical evaluation of metabolic models, such as the quantification of flux estimate uncertainty, validation and model selection methods have been underappreciated and underexplored. We review the history and state-of-the-art in constraint-based metabolic model validation and model selection. Applications and limitations of the χ 2 -test of goodness-of-fit, the most widely used quantitative validation and selection approach in 13C-MFA, are discussed, and complementary and alternative forms of validation and selection are proposed. A combined model validation and selection framework for 13C-MFA incorporating metabolite pool size information that leverages new developments in the field is presented and advocated for. Finally, we discuss how adopting robust validation and selection procedures can enhance confidence in constraint-based modeling as a whole and ultimately facilitate more widespread use of FBA in biotechnology.

59 BASIC BIOLOGICAL SCIENCES↗

Improving ProtoDUNE pion cross-section measurements with NuGraph Michel-electron tagging

Understanding hadron-argon interactions is essential for precise neutrino energy reconstruction and final-state interaction modeling in liquid-argon time projection chamber (LArTPC) experiments such as DUNE. In particular, pion absorption and charge-exchange processes constitute significant sources of systematic uncertainty in neutrino oscillation measurements. ProtoDUNE-SP, a large-scale LArTPC prototype operated at the CERN Neutrino Platform and exposed to charged-particle test beams in the few-GeV range, enables direct measurements of these processes. This work focuses on the measurement of differential cross sections for pion absorption and charge exchange using the 2 GeV/c pion beam data from the ProtoDUNE-SP run. A key component of this analysis is the identification of Michel electrons from $\pi \rightarrow \mu \rightarrow e$ decay chains, which helps separate different interaction topologies and improves background rejection. Michel electron identification will also assist in reliably calibrating the electromagnetic response in ProtoDUNE-SP data and for the future DUNE detectors. In this analysis, we apply NuGraph to identify Michel electrons. NuGraph is a graph neural network that models detector hits as nodes connected by spatial and temporal edges for particle and topology classification in LArTPC detectors. We first benchmark NuGraph’s Michel electron classification performance using ICEBERG data, a small-scale LArTPC prototype used for DUNE electronics and reconstruction development, and then transfer the approach to ProtoDUNE-SP. This poster presents the analysis strategy, NuGraph-based classification studies, and discusses how these developments are expected to improve the pion cross-section measurement.

Razafinime, Soamasina Herilala [Cincinnati U.] (OR↗

Wave Detection and Tracking Within a Rotating Detonation Engine Through Object Detection

As the operational time window of experimental rotating detonation engines (RDEs) is expanded and the technology matures toward integration within gas turbines, monitoring techniques must evolve to offer computationally efficient and highly time-resolved diagnostics. In this study, computer vision object detection methodology that seeks to reduce data processing time and calculate wave velocity within drastically reduced time intervals as compared to traditional high-frame-rate RDE images analysis techniques is proposed. The adapted you-only-look-once object detection network is trained to detect individual detonation waves within single down-axis RDE images. The wave location and rotational direction detected within a frame are tracked through a series of high-speed images to calculate the frame-to-frame wave velocity with the time-step resolution of $\mathrm{20 μs}$ across a series of frames. The analysis of the annotation box size and image linearization effects is presented, demonstrating the lowest frame-to-frame velocity total uncertainty of $\mathrm{±3.8\%}$ and the highest classification speed of 9.5 frames per second using linearized images. Linearized images “unwrap” the RDE annulus pixel region to a reduced image size. Here, this new method offers great reductions in data processing times and unsteady detonation behavior insight at intervals more comparable to the timescales of detonation wave interactions via the application of machine learning to experimental RDE data.

33 ADVANCED PROPULSION SYSTEMS↗