Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “multiscale modeling”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 919 records · Page 51
All sourcesNASA NTRSDOE OSTI
NASA NTRS2021

Mineral Dust Cycle in the Multiscale Online Nonhydrostatic AtmospheRe CHemistry Model (Monarch) Version 2.0

We present the dust module in the Multiscale Online Non-hydrostatic AtmospheRe CHemistry model (MONARCH) version 2.0, a chemical weather prediction system that can be used for regional and global modeling at a range of resolutions. The representations of dust processes in MONARCH were upgraded with a focus on dust emission (emission parameterizations, entrainment thresholds, considerations of soil moisture and surface cover), lower boundary conditions (roughness, potential dust sources), and dust–radiation interactions. MONARCH now allows modeling of global and regional mineral dust cycles using fundamentally different paradigms, ranging from strongly simplified to physics-based parameterizations. We present a detailed description of these updates along with four global benchmark simulations, which use conceptually different dust emission parameterizations, and we evaluate the simulations against observations of dust optical depth. We determine key dust parameters, such as global annual emission/deposition flux, dust loading, dust optical depth, mass-extinction efficiency, single-scattering albedo, and direct radiative effects. For dust-particle diameters up to 20 µm, the total annual dust emission and deposition fluxes obtained with our four experiments range between about 3500 and 6000 Tg, which largely depend upon differences in the emitted size distribution. Considering ellipsoidal particle shapes and dust refractive indices that account for size-resolved mineralogy, we estimate the global total (longwave and shortwave) dust direct radiative effect (DRE) at the surface to range between about −0.90 and −0.63 W m−2 and at the top of the atmosphere between −0.20 and −0.28 W m−2. Our evaluation demonstrates that MONARCH is able to reproduce key features of the spatiotemporal variability of the global dust cycle with important and insightful differences between the different configurations.

Dust cycle↗
DOE OSTI2025

Integrating Ultra-Coarse-Grained Protein Models into Accessible Workflows for Multiscale Molecular Dynamics

To capture protein conformational transitions using molecular dynamics (MD), several simulation resolutions covering different spatial and temporal scales are typically needed. All-atom (AA) simulations provide fine resolution, but are computationally infeasible for large systems over longer durations. Coarse-grained (CG) and ultra-coarse-grained (UCG) models have a lower resolution and computational cost while still being able to conserve essential protein features. Prior work on a Multiscale Machinelearned Modeling Infrastructure (MuMMI) combined both AA and CG simulations to study RAS-RAF protein interactions, leveraging CG models for longer time scales and using AA to investigate unusual conformations in greater detail. However, MuMMI is still resource-intensive, and this study aims to maximize exploration of the protein conformational space while reducing computational cost. In this paper, we build on prior work that integrates UCG models based on heterogeneous elastic network modeling (hENM) into the MuMMI workflow. We demonstrate that UCG models enable accurate sampling of protein conformations, focusing on simulating RAS-RAF protein interactions. Using higher-resolution CG Martini simulation data, we can automatically refine intramolecular interactions in UCG models. We present a scalable Python package that uses fluctuations observed in higher-resolution CG Martini simulations to estimate bond coefficients of the UCG model. We built novel machine learning-based backmapping methods to recover more detailed CG Martini structures from UCG structures, using diffusion models to learn the mapping between scales. Finally, we present UCG-mini-MuMMI, an accessible and less compute-intensive version of MuMMI as a resource for the scientific community. Incorporating UCG models into MD studies is applicable to a broad range of systems and proteins, and our study offers insights into the advantages and limitations of these methods.

Chemical structure↗
DOE OSTI2021

A Novel Multiphysics Multiscale Multiporosity Shale Gas Transport Model for Geomechanics/Flow Coupling in Steady and Transient States

Summary A novel multiphysics multiscale multiporosity shale gas transport (M3ST) model was developed to investigate shale gas transport in both transient and steady states. The microscale model component contains a kerogen domain and an inorganic matrix domain, and each domain has its own geomechanical and gas transport properties. Permeabilities of various shale cores were measured in the laboratory using a pulse decay permeameter (PDP) with different pore pressure and confining stress combinations. The PDP-measured apparent permeability as a function of pore pressure under two effective stresses was fitted using the microscale M3ST model component based on nonlinear least squares fitting (NLSF), and the fitted model parameters were able to provide accurate model predictions for another effective stress. The parameters and petrophysical properties determined in the steady state were then used in the transient-state, continuum-scale M3ST model component, which performed history matching of the evolutions of the upstream and downstream gas pressures. In addition, a double-exponential empirical model was developed as a powerful alternative to the M3ST model to fit laboratory-measured apparent permeability under various effective stresses and pore pressures. The developed M3ST model and the research findings in this study provided critical insights into the role of the multiphysics mechanisms, including geomechanics, fluid dynamics and transport, and the Klinkenberg effect on shale gas transport across different spatial scales in both steady and transient states.

Engineering↗
DOE OSTI2015

Building Virtual Ecosystems: Computational Challenges for Mechanistic Modeling of Terrestrial Environments Workshop, Germantown, Maryland, March 26–27, 2014

The mission of the Climate and Environmental Sciences Division of the Office of Biological and Environmental Research (BER) within the U.S. Department of Energy’s (DOE) Office of Science is “to advance a robust, predictive understanding of Earth’s climate and environmental systems and to inform the development of sustainable solutions to the nation’s energy and environmental challenges.” This formidable challenge requires quantification of stocks and controls on states, fluxes, and residence times of water, carbon, and other key elements through all components of the terrestrial system. These components include vegetation, soils, the deep vadose zone, groundwater, and surface water. To achieve this level of predictive understanding, a new generation of multiscale, multiphysics models is needed for terrestrial systems—models that incorporate process couplings and feedbacks between various “pools” (i.e., vegetation, soils, subsurface aquifers, and surface waters) across wide ranges of spatial and temporal scales. To explore the potential of a new generation of multiscale, multiphysics models for revolutionizing the understanding of terrestrial ecosystem dynamics, BER held the Computational Challenges for Mechanistic Modeling of Terrestrial Environments workshop on March 26–27, 2014, in Germantown, Maryland. The workshop brought together 29 researchers with diverse expertise, including hydrologists, environmental scientists, ecologists, microbiologists, plant scientists, and computational scientists. Through a combination of invited talks, breakout sessions, and report-back discussions, workshop attendees identified challenges and research opportunities needed to develop a more seamless and continuous framework for mechanistic modeling of terrestrial environments extending from the bedrock to the atmospheric boundary layer and from single-plant systems to fields of crops to watersheds and river basins.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2014

Parameterizing the Morse potential for coarse-grained modeling of blood plasma

Multiscale simulations of fluids such as blood represent a major computational challenge of coupling the disparate spatiotemporal scales between molecular and macroscopic transport phenomena characterizing such complex fluids. In this paper, a coarse-grained (CG) particle model is developed for simulating blood flow by modifying the Morse potential, traditionally used in Molecular Dynamics for modeling vibrating structures. The modified Morse potential is parameterized with effective mass scales for reproducing blood viscous flow properties, including density, pressure, viscosity, compressibility and characteristic flow dynamics of human blood plasma fluid. The parameterization follows a standard inverse-problem approach in which the optimal micro parameters are systematically searched, by gradually decoupling loosely correlated parameter spaces, to match the macro physical quantities of viscous blood flow. The predictions of this particle based multiscale model compare favorably to classic viscous flow solutions such as Counter-Poiseuille and Couette flows. It demonstrates that such coarse grained particle model can be applied to replicate the dynamics of viscous blood flow, with the advantage of bridging the gap between macroscopic flow scales and the cellular scales characterizing blood flow that continuum based models fail to handle adequately.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2012

Modeling, Analysis and Simulation of Multiscale Preferential Flow

The research agenda of this project are: (1) Modeling of preferential transport from mesoscale to macroscale; (2) Modeling of fast flow in narrow fractures in porous media; (3) Pseudo-parabolic Models of Dynamic Capillary Pressure; (4) Adaptive computational upscaling of flow with inertia from porescale to mesoscale; (5) Adaptive modeling of nonlinear coupled systems; and (6) Adaptive modeling and a-posteriori estimators for coupled systems with heterogeneous data.

58 GEOSCIENCES↗
DOE OSTI2026

Bemnifosbuvir: An HCV NS5B Inhibitor With Multiple Modes of Action

Bemnifosbuvir (BEM) is a potent, pan-genotypic inhibitor targeting the hepatitis C virus (HCV) NS5B polymerase. Its antiviral activity was evaluated in an ascending dose phase I clinical trial involving 30 patients treated once a day for 7 days. After treatment initiation, plasma HCV RNA declined in a biphasic manner with a mean reduction of 2.3 log 10 IU/mL after 24 hours and 4.4 log10 IU/mL by day 7 for the highest dose. Alanine aminotransferase (ALT) also normalized in most patients. We employed a multiscale mathematical model fitted to the HCV RNA and ALT dynamics to quantify the antiviral activity and evaluate the modes of action of BEM. We found that models in which BEM only acted as a typical HCV RNA polymerase inhibitor and reduced the intracellular production of HCV RNA did not fit the data as well as models in which BEM had multiple modes of action, including suppressing viral assembly and secretion and enhancing intracellular HCV RNA degradation. BEM's effectiveness in inhibiting intracellular HCV RNA production increased with dose (150 mg/day: 88.2%, 300 mg/day: 98.8%, 600 mg/day: 99.5%), while inhibition of viral assembly and release was ~95% effective regardless of dose. We observed a dose-dependent enhancement in the degradation of intracellular HCV RNA, with degradation rates 1.5-fold higher in patients receiving 300 mg/day and 2.7-fold higher in those receiving 600 mg/day than in patients receiving 150 mg/day. No significant differences in antiviral activity were detected between HCV genotypes 1b and 3 or between patients with and without compensated cirrhosis.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Data-driven learning of nonlocal physics from high-fidelity synthetic data

A key challenge to nonlocal models is the analytical complexity of deriving them from first principles, and frequently their use is justified a posteriori. Here, we extract nonlocal models from data, circumventing these challenges and providing data-driven justification for the resulting model form. Extracting data-driven surrogates is a major challenge for machine learning (ML) approaches, due to nonlinearities and lack of convexity — it is particularly challenging to extract surrogates which are provably well-posed and numerically stable. Our scheme not only yields a convex optimization problem, but also allows extraction of nonlocal models whose kernels may be partially negative while maintaining well-posedness even in small-data regimes. To achieve this, based on established nonlocal theory, we embed in our algorithm sufficient conditions on the non-positive part of the kernel that guarantee well-posedness of the learnt operator. These conditions are imposed as inequality constraints to meet the requisite conditions of the nonlocal theory. We demonstrate this workflow for a range of applications, including reproduction of manufactured nonlocal kernels; numerical homogenization of Darcy flow associated with a heterogeneous periodic microstructure; nonlocal approximation to high-order local transport phenomena; and approximation of globally supported fractional diffusion operators by truncated kernels.

42 ENGINEERING↗
DOE OSTI2019

Density estimation techniques for multiscale coupling of kinetic models of the plasma material interface

In this work we analyze two classes of Density-Estimation techniques which can be used to consistently couple different kinetic models of the plasma-material interface, intended as the region of plasma immediately interacting with the first surface layers of a material wall. In particular, we handle the general problem of interfacing a continuum multi-species Vlasov-Poisson-BGK plasma model to discrete surface erosion models. The continuum model solves for the energy-angle distributions of the particles striking the surface, which are then driving the surface response. A modification to the classical Binary-Collision Approximation (BCA) method is here utilized as a prototype discrete model of the surface, to provide boundary conditions and impurity distributions representative of the material behavior during plasma irradiation. The numerical tests revealed the superior convergence properties of Gaussian Mixture Models over Kernel Density Estimation methods, with Gaussian Mixtures and Epanechnikov-KDEs both being up to two orders of magnitude faster than Gaussian-KDEs. The methodology here presented allows a self-consistent treatment of the plasma-material interface in magnetic fusion devices, including both the near-surface plasma (plasma sheath and presheath) in magnetized conditions, and surface effects such as sputtering, back-scattering, and ion implantation. The same coupling techniques can also be utilized for other discrete material models such as Molecular Dynamics.

42 ENGINEERING↗
DOE OSTI2019

Multiscale water dynamics in model Anion Exchange Membranes for Alkaline Membrane Fuel Cells

Ionic conductivity and water transport through alkaline Anion Exchange Membranes (AEM) are key properties for application in Alkaline Membrane Fuel Cells (AMFC), Redox-Flow-Cells, or Alkaline Membrane Electrolysis. AEMs consist of a polymer domain with cationic side groups and a pervading water domain through which anions are conducted. In this study, Quasielastic Neutron Scattering (QENS) is employed to study water rotational and diffusive dynamics in the hydroxide form of a model AEM (Fumatech FAA-3) at water contents relevant for application. Two distinct diffusion time- and length-scales are accessed: “Localized” diffusion at the lower Ångstrom/tens of picosecond scale and “extended” diffusion at the higher Ångstrom/hundreds of picosecond scale. The localized diffusion length scale is smaller than the membrane's water domain thickness and its diffusion coefficients remain close to the value of bulk water even at decreasing water content. Extended diffusion approaches the thickness of the water domain and its diffusion coefficients decrease strongly with decreasing water content. In conclusion, a master curve links water domain thickness to the extended water diffusion coefficients for the alkaline hydrocarbon model AEM and literature data on acidic per-fluorinated Proton Exchange Membranes.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Multiscale and Machine Learning Modeling for Additive Manufacturing

Additive manufacturing (AM) techniques provide the opportunity to simultaneously design new materials and components with complex structures in less time, enabling faster material developments. Even though compositionally similar, the texture of the materials produced by such techniques is significantly different from conventionally manufactured materials. Additively manufactured materials produces highly heterogeneous microstructure within a single build. Such variations in the microstructure make qualifying AM products challenging for extreme environment applications. Understanding the AM process and its influence on the materials’ microstructures/properties is paramount for evaluating the workability and performance of the manufactured materials. The performance of AM materials for advanced nuclear reactor applications is of interest to the Advanced Materials and Manufacturing Technologies (AMMT) program under the Department of Energy Office of Nuclear Energy. Hence, considering the microstructural variabilities in the AM products and their impact on the performance of the material, it is important to correlate the process conditions to the final product and establish a process-structure-property- performance (PSPP) correlation for AM materials.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗