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At least 919 records · Page 51

HEALPix: A Framework for High-Resolution Discretization and Fast Analysis of Data Distributed on the Sphere

HEALPix the Hierarchical Equal Area isoLatitude Pixelization is a versatile structure for the pixelization of data on the sphere. An associated library of computational algorithms and visualization software supports fast scientific applications executable directly on discretized spherical maps generated from very large volumes of astronomical data. Originally developed to address the data processing and analysis needs of the present generation of cosmic microwave background experiments (e.g., BOOMERANG, WMAP), HEALPix can be expanded to meet many of the profound challenges that will arise in confrontation with the observational output of future missions and experiments, including, e.g., Planck, Herschel, SAFIR, and the Beyond Einstein inflation probe. In this paper we consider the requirements and implementation constraints on a framework that simultaneously enables an efficient discretization with associated hierarchical indexation and fast analysis/synthesis of functions defined on the sphere. We demonstrate how these are explicitly satisfied by HEALPix.

cosmic microwave background↗

Object-Oriented/Data-Oriented Design of a Direct Simulation Monte Carlo Algorithm

Over the past decade, there has been much progress towards improved phenomenological modeling and algorithmic updates for the direct simulation Monte Carlo (DSMC) method, which provides a probabilistic physical simulation of gas Rows. These improvements have largely been based on the work of the originator of the DSMC method, Graeme Bird. Of primary importance are improved chemistry, internal energy, and physics modeling and a reduction in time to solution. These allow for an expanded range of possible solutions In altitude and velocity space. NASA's current production code, the DSMC Analysis Code (DAC), is well-established and based on Bird's 1994 algorithms written in Fortran 77 and has proven difficult to upgrade. A new DSMC code is being developed in the C++ programming language using object-oriented and data-oriented design paradigms to facilitate the inclusion of the recent improvements and future development activities. The development efforts on the new code, the Multiphysics Algorithm with Particles (MAP), are described, and performance comparisons are made with DAC.

Liechty, Derek S.↗

Community Organizations: Changing the Culture in Which Research Software Is Developed and Sustained

Software is the key crosscutting technology that enables advances in mathematics, computer science, and domain-specific science and engineering to achieve robust simulations and analysis for science, engineering, and other research fields. However, software itself has not traditionally received focused attention from research communities; rather, software has evolved organically and inconsistently, with its development largely as by-products of other initiatives. Moreover, challenges in scientific software are expanding due to disruptive changes in computer hardware, increasing scale and complexity of data, and demands for more complex simulations involving multiphysics, multiscale modeling and outer-loop analysis. In recent years, community members have established a range of grass-roots organizations and projects to address these growing technical and social challenges in software productivity, quality, reproducibility, and sustainability. This article provides an overview of such groups and discusses opportunities to leverage their synergistic activities while nurturing work toward emerging software ecosystems.

97 MATHEMATICS AND COMPUTING↗

7th Annual Earth System Grid Federation Face-to-Face Conference Report

The Seventh Annual Earth System Grid Federation (ESGF) Face-to-Face (F2F) Conference held December 4–8, 2017, in San Francisco, California, USA, assembled together a collection of independently funded national and international projects comprised of government agencies, institutions, and companies dedicated to the creation, management, analysis, and distribution of extreme-scale scientific data. The purpose of the conference was to discuss sustaining and enhancing the resilient ESGF data infrastructure with friendlier tools for the expanding global scientific community—this year’s emphasis was placed on the preparedness of the Coupled Model Intercomparison Project, phase 6 (CMIP6). It also focused on new tools that fulfill important and strategic capability gaps in scientific data archiving, access, analysis, and knowledge discovery. As the Executive Committee Chair of ESGF, I would like to personally thank each of conference attendees and those who could not attend but contributed to and/or supported the development of the ESGF software stack. It is an exciting time for the ESGF consortium as we continue to grow and adjust, remaining always adaptable, motivated, and responsive to our growing base of community projects. As we move forward, our ESGF organization is confronting and addressing many changes during a time of larger national and international commitment with fewer community resources. That said, our commitment to our sponsors and the community remains strong as we continue to meet the challenges before us and bring inspired developers and the scientific community together through forums like this conference, ensuring our ESGF organization remains robust and at the cutting edge of technology.

58 GEOSCIENCES↗

Search strategy effects on PN acquisition performance

The present paper focusses on 'random' and 'expanding window' PN acquisition search strategies and analytically develops the PN acquisition time statistics as functions of salient system parameters such as prediction SNR, detection and false alarm probabilities and a priori information on epoch location. The significance of this analysis is its general applicability to arbitrary postdetection processing schemes. Computed performance results account for the above salient parameters, wherein sequential detection is employed in conjunction with random and selected expanding window search strategies.

Weinberg, A.↗

IMG/M 4 version of the integrated metagenome comparative analysis system

IMG/M (http://img.jgi.doe.gov/m) provides support for comparative analysis of microbial community aggregate genomes (metagenomes) in the context of a comprehensive set of reference genomes from all three domains of life, as well as plasmids, viruses and genome fragments. IMG/M’s data content and analytical tools have expanded continuously since its first version was released in 2007. Since the last report published in the 2012 NAR Database Issue, IMG/M’s database architecture, annotation and data integration pipelines and analysis tools have been extended to cope with the rapid growth in the number and size of metagenome data sets handled by the system. IMG/M data marts provide support for the analysis of publicly available genomes, expert review of metagenome annotations (IMG/M ER: http://img.jgi.doe.gov/mer) and Human Microbiome Project (HMP)-specific metagenome samples (IMG/M HMP: http://img.jgi.doe.gov/ imgm_hmp).

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Software Development and Testing Support for the Avionics Systems Telemetry Tool Suite

The Customer Avionics Interface Development and Analysis (CAIDA) team provides modeling and simulation software for the verification of the Launch Control System (LCS). In late 2015, CAIDA began development of the Data Exchange Message (DEM) Generator (DEMGen) and development of the DEM Modifier (DEMMod) in early 2017. DEMGen is able to mimic the telemetry streams normally sent by different simulators allowing increased user control and more telemetry instances. DEMMod takes in a telemetry stream and allows the modification of entire packets or simple measurement values. Together, these tools provide the capabilities to simulate and test complex launch scenarios to ensure LCS is fully prepared for any anomalous behavior during an actual launch. In early 2018, CAIDA began a new project called the CAIDA Advanced Telemetry Tool (CATT), which combined the code and documentation of DEMGen and DEMMod. CATT now allows the integration of new tools into a singular program providing compact and easy access. In the fall of 2018, the author worked with another intern, Antonio Negron, to develop several new CATT features along with proper documentation and unit testing. In the following spring, the author continued that work by integrating the features into CATT, solidifying the documentation, and expanding the testing to cover more cases. The outcome of both semesters includes an inspection engine for automated packet analysis, a packet-masking feature, and a multi-measurement sequencing feature.

Thomas, Taylor Walter↗

NREL Analysis: Reimagining What's Possible for Clean Energy, Continuum Magazine, Summer 2015 / Issue 8; NREL (National Renewable Energy Laboratory)

This issue of Continuum Magazine covers the depth and breadth of NREL's ever-expanding analytical capabilities. For example, in one project we are leading national efforts to create a computer model of one of the most complex systems ever built. This system, the eastern part of the North American power grid, will likely host an increasing percentage of renewable energy in years to come. Understanding how this system will work is important to its success - and NREL analysis is playing a major role. We are also identifying the connections among energy, the environment and the economy through analysis that will point us toward a 'water smart' future.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Deep learning analysis of defect and phase evolution during electron beam-induced transformations in WS2

Abstract Recent advances in scanning transmission electron microscopy (STEM) allow the real-time visualization of solid-state transformations in materials, including those induced by an electron beam and temperature, with atomic resolution. However, despite the ever-expanding capabilities for high-resolution data acquisition, the inferred information about kinetics and thermodynamics of the process, and single defect dynamics and interactions is minimal. This is due to the inherent limitations of manual ex situ analysis of the collected volumes of data. To circumvent this problem, we developed a deep-learning framework for dynamic STEM imaging that is trained to find the lattice defects and apply it for mapping solid state reactions and transformations in layered WS 2 . The trained deep-learning model allows extracting thousands of lattice defects from raw STEM data in a matter of seconds, which are then classified into different categories using unsupervised clustering methods. We further expanded our framework to extract parameters of diffusion for sulfur vacancies and analyzed transition probabilities associated with switching between different configurations of defect complexes consisting of Mo dopant and sulfur vacancy, providing insight into point-defect dynamics and reactions. This approach is universal and its application to beam-induced reactions allows mapping chemical transformation pathways in solids at the atomic level.

36 MATERIALS SCIENCE↗

HIAD Advancements and Extension of Mission Applications

The Hypersonic Inflatable Aerodynamic Decelerator (HIAD) technology has made significant advancements over the last decade with flight test demonstrations and ground development campaigns. The first generation (Gen-1) design and materials were flight tested with the successful third Inflatable Reentry Vehicle Experiment flight test of a 3-m HIAD (IRVE-3). Ground development efforts incorporated materials with higher thermal capabilities for the inflatable structure (IS) and flexible thermal protection system (F-TPS) as a second generation (Gen-2) system. Current efforts and plans are focused on extending capabilities to improve overall system performance and reduce areal weight, as well as expand mission applicability. F-TPS materials that offer greater thermal resistance, and ability to be packed to greater density, for a given thickness are being tested to demonstrated thermal performance benefits and manufacturability at flight-relevant scale. IS materials and construction methods are being investigated to reduce mass, increase load capacities, and improve durability for packing. Previous HIAD systems focused on symmetric geometries using stacked torus construction. Flight simulations and trajectory analysis show that symmetrical HIADs may provide L/D up to 0.25 via movable center of gravity (CG) offsets. HIAD capabilities can be greatly expanded to suit a broader range of mission applications with asymmetric shapes and/or modulating L/D. Various HIAD concepts are being developed to provide greater control to improve landing accuracy and reduce dependency upon propulsion systems during descent and landing. Concepts being studied include a canted stack torus design, control surfaces, and morphing configurations that allow the shape to be actively manipulated for flight control. This paper provides a summary of recent HIAD development activities, and plans for future HIAD developments including advanced materials, improved construction techniques, and alternate geometry concepts that will greatly expand HIAD mission applications.

Johnson, R. Keith↗

The development and analysis of geopotential coefficient models to spherical harmonic degree 360

Two new geopotential coefficient models to spherical harmonic degree 360 are developed using recent advances made in theoretical modeling methods, satellite gravitational models, and expanded and improved terrestrial data. The new models are based on the combination of a satellite potential coefficient model (GEM-T2) to degree 50 with 30-arc mean gravity anomalies, yielding an adjusted set of coefficients and gravity anomalies, which were then harmonically analyzed to yield a set of potential coefficients to degree 360. The models were verified in several ways including satellite orbit residual analysis, demonstrating a substantial improvement over previous high-degree expansions.

Rapp, Richard H.↗

Post-closure Nuclear Criticality Safety Evaluations for Disposition of Criticality Control Overpacks at the Waste Isolation Pilot Plant

The Waste Isolation Pilot Plant (WIPP) is a geological repository in southern New Mexico that provides for disposal of transuranic (TRU) wastes from atomic energy defense activities. The Sandia National Laboratories (Sandia) Report, Consideration of Nuclear Criticality When Disposing of Transuranic Waste at the Waste Isolation Pilot Plant, addresses nuclear criticality safety based on the projected inventory characteristics for the initial compliance certification application of WIPP in 1996. As the inventory, waste forms, and disposal package designs change, revised or new analyses are necessary to demonstrate acceptability for these configurations within the WIPP safety basis and compliance with 10,000-year post-closure standards of the US Environmental Protection Agency (EPA). Saylor and Scaglione evaluated criticality control overpacks (CCOs) in 2017 based on conservative assumptions for post-closure repository structural conditions with resulting effects on containers and container spacing, The Saylor and Scaglione evaluation of CCOs addressed a single waste configuration that represents the Surplus Plutonium Disposition Program’s dilute and dispose waste form and composition. This initial CCO study demonstrated that 50 grams of boron carbide (B 4 C) per CCO is sufficient to ensure post-closure criticality safety based on a well-mixed waste composition, and Oak Ridge National Laboratory (ORNL) subsequently determined that this amount of B 4 C does not require constraints on moisture or plastic present as moderator. The Saylor and Scaglione analysis conservatively assumes repository room closure that eliminates all space between fissile gram equivalent (FGE) 239 Pu masses. The close-packed array was selected based on limited availability of repository salt creep modeling results at that time. In 2019, Brickner provided additional evaluations for pipe overpack containers (POCs), building on the conservative basis provided by Saylor and Scaglione. Brickner’s 2019 analysis made use of new geomechanical data for post-closure spacing that rely on advances in repository modeling as documented in the work by Reedlunn and Bean. This current CCO evaluation for generic waste materials expands on earlier work performed at ORNL and includes evaluation of CCOs across a much broader range of possible waste compositions and geometries. This evaluation is intended to provide input for the required feature, event and process (FEP) screening to determine if post-closure criticality must be included as an event in the 10,000-year regulatory evaluation. As such, the approach to modeling post-closure criticality presented in this report has been coordinated with the Sandia team responsible for FEP screening. The resulting analysis supports disposition of fissile materials in the CCO containing up to 380 FGE 239 Pu and expands conditions acceptable for disposal of fissile material in CCOs. This evaluation builds on the methodology of Saylor and Scaglione and Brickner, using the most recently available geomechanical data for CCO spacing under salt creep compaction scenarios provided by Reedlunn and Bean. The broad range of fissile material configurations analyzed in this report are intended to account for configurations that may occur during the post-closure disposal time period, and it also includes waste configurations that are not physically possible to support analysis of conditions that influence neutron fluence.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Problems and solutions for the analysis of somatic CAG repeat expansion and their relationship to Huntington's disease toxicity

Huntington’s Disease is caused by inheritance of a single disease-length allele harboring an expanded CAG repeat, which continues to expand in somatic tissues with age. Whether somatic expansion contributed to toxicity was unknown. From extensive work from multiple laboratories, it has been made clear that toxicity depended on length of the inherited allele, but whether preventing or delaying somatic repeat expansion in vivo would be beneficial was unknown, since the inherited disease allele was still expressed. In Budworth et al., we provided definitive evidence that suppressing the somatic expansion in mice substantially delays disease onset in littermates that inherit the same disease-length allele. This key discovery opens the door for therapeutic approaches targeted at stopping or shortening the CAG tract during life. The analysis was difficult and, at times, non-standard. Here, we take the opportunity to discuss the challenges, the analytical solutions, and to address some controversial issues with respect to expansion biology.

59 BASIC BIOLOGICAL SCIENCES↗

Thermomechanical postbuckling analysis of laminated composite shells

The nonlinear response of laminated composite structures subjected to thermal loads is investigated. Analysis is performed using a refined theory and an associated finite element model for geometrically nonlinear analysis of laminated composite shell structures. The model is based on a third-order displacement field which accounts for both transverse shear and transverse normal deformations. Numerical studies of simply-supported plates and cylindrical panels indicate that when the panels are free to expand or contract in the transverse direction, the predicted critical buckling temperatures do not depend significantly upon whether or not transverse normal deformations are explicitly accounted for in the analysis model. However, the critical buckling temperatures are strongly dependent upon whether or not the transverse normal deformations are restrained along the boundaries of the panels.

Averill, R. C.↗

Dynamic Characterization of NASA Armstrong Test Facility Mechanical Vibration Facility

In preparation for Sierra Nevada Corporation’s (SNC) Dream Chaser spacecraft vibration test campaign at NASA Armstrong Test Facility (ATF) in Sandusky, Ohio, a dynamic characterization of the Mechanical Vibration Facility (MVF) is currently ongoing. The Mechanical Vibration Facility is comprised of an 18 ft diameter annulus table that is driven with sixteen hydraulic vertical actuator assemblies and four hydraulic horizontal actuator assemblies. During a test campaign this allows for single axis vibration testing in the vertical axis and in each of the two orthogonal horizontal axes without the need for reconfiguring the test article. The dynamic characterization of the facility was defined to follow a building-block approach requiring three vibration test configurations: (1) MVF bare table (2) MVF table and head expander (3) MVF table, head expander, and a dummy test article. Following the completion of the facility dynamic characterization, a facility finite element model (FEM) will be test-verified allowing for more accurate pretest analysis used for determining response limits and abort levels. To date two of the three test configurations have been completed. Test results have been used to verify the facility FEM that includes both the 18 ft diameter annulus table and the aluminum head expander that fills in the center opening of the annulus to provide a continuous flat mounting surface. Both the MVF table and the head expander models were previously correlated using test results from free-free boundary condition modal tests so model updates to the facility FEM focused on the uncorrelated vertical actuator assemblies and horizontal actuator assemblies. The accuracy of the test-verified facility FEM will be further determined based on comparison of analytical and test results from the vibration test of the dummy test article. Efforts will also be made to determine fixed base modes of the test article attached to the flexible vibration table using fixed base correction techniques. This paper will discuss test and analytical results from the MVF dynamic characterization test sequence and corresponding model updating effort.

Emma L Pierson↗

Analysis of ignition and flame spreading in the Space Shuttle head-end star grain

A model to analyze the unsteady, multidimensional, turbulent flow in the head-end, star slot section of a solid rocket motor (SRM) during ignition transients is presented. This paper examines the complex interactions between the expanding igniter plume, the flow field within the star slot, the heat transfer to the solid propellant, ignition of the propellant, and subsequent flame spreading across the surface of the grain in the slot. The analysis provides a description of the ignition transient sequence from the onset of igniter flow to complete ignition of the head-end star slot region of the SRM.

Ciucci, A.↗

Electromagnetic pulse from supernovae

Upper and lower limits to the radiated electromagnetic pulse from a supernova are calculated assuming that the mass fraction of the matter expanding inside the dipole magnetic field shares energy and maintains the pressure balance in the process. A supernova model is described in which the explosion occurs in old low-mass stars containing less than 10% hydrogen in their ejecta and a remnant neutron star is produced. The analysis indicates that although the surface layer of a star of 1 g/cu thickness may be shock-accelerated to an energy factor of about 100 and may expand into the vacuum with an energy factor approaching 10,000, the equatorial magnetic field will retard this expansion so that the inner, more massive ejecta layers will effectively accelerate the presumed canonical dipole magnetic field to greater velocities than would the surface layer alone. A pulse of 10 to the 46th power ergs in a width of about 150 cm will result which will not be affected by circumstellar matter or electron self-radiation effects. It is shown that interstellar matter will attenuate the pulse, but that charge separation may reduce the attenuation and allow a larger pulse to escape.

Colgate, S. A.↗

Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil

ABSTRACT Soil ecosystems harbor diverse microorganisms and yet remain only partially characterized as neither single-cell sequencing nor whole-community sequencing offers a complete picture of these complex communities. Thus, the genetic and metabolic potential of this “uncultivated majority” remains underexplored. To address these challenges, we applied a pooled-cell-sorting-based mini-metagenomics approach and compared the results to bulk metagenomics. Informatic binning of these data produced 200 mini-metagenome assembled genomes (sorted-MAGs) and 29 bulk metagenome assembled genomes (MAGs). The sorted and bulk MAGs increased the known phylogenetic diversity of soil taxa by 7.2% with respect to the Joint Genome Institute IMG/M database and showed clade-specific sequence recruitment patterns across diverse terrestrial soil metagenomes. Additionally, sorted-MAGs expanded the rare biosphere not captured through MAGs from bulk sequences, exemplified through phylogenetic and functional analyses of members of the phylum Bacteroidetes . Analysis of 67 Bacteroidetes sorted-MAGs showed conserved patterns of carbon metabolism across four clades. These results indicate that mini-metagenomics enables genome-resolved investigation of predicted metabolism and demonstrates the utility of combining metagenomics methods to tap into the diversity of heterogeneous microbial assemblages. IMPORTANCE Microbial ecologists have historically used cultivation-based approaches as well as amplicon sequencing and shotgun metagenomics to characterize microbial diversity in soil. However, challenges persist in the study of microbial diversity, including the recalcitrance of the majority of microorganisms to laboratory cultivation and limited sequence assembly from highly complex samples. The uncultivated majority thus remains a reservoir of untapped genetic diversity. To address some of the challenges associated with bulk metagenomics as well as low throughput of single-cell genomics, we applied flow cytometry-enabled mini-metagenomics to capture expanded microbial diversity from forest soil and compare it to soil bulk metagenomics. Our resulting data from this pooled-cell sorting approach combined with bulk metagenomics revealed increased phylogenetic diversity through novel soil taxa and rare biosphere members. In-depth analysis of genomes within the highly represented Bacteroidetes phylum provided insights into conserved and clade-specific patterns of carbon metabolism.

59 BASIC BIOLOGICAL SCIENCES↗