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At least 919 records · Page 51

CRISPRi functional genomics in bacteria and its application to medical and industrial research

SUMMARY Functional genomics is the use of systematic gene perturbation approaches to determine the contributions of genes under conditions of interest. Although functional genomic strategies have been used in bacteria for decades, recent studies have taken advantage of CRISPR (clustered regularly interspaced short palindromic repeats) technologies, such as CRISPRi (CRISPR interference), that are capable of precisely modulating expression of all genes in the genome. Here, we discuss and review the use of CRISPRi and related technologies for bacterial functional genomics. We discuss the strengths and weaknesses of CRISPRi as well as design considerations for CRISPRi genetic screens. We also review examples of how CRISPRi screens have defined relevant genetic targets for medical and industrial applications. Finally, we outline a few of the many possible directions that could be pursued using CRISPR-based functional genomics in bacteria. Our view is that the most exciting screens and discoveries are yet to come.

Microbiology↗

RF deflecting cavity for fast radioactive ion beams

Abstract The Facility for Rare Isotope Beams (FRIB) will be a new scientific user facility that produces rare-isotope beams for experiments from the fragmentation of heavy ions at energies of 100–200 MeV/u. During the projectile fragmentation, the rare isotope of interest is produced along with many contaminants that need to be removed before the beam reaches detectors. At FRIB, this is accomplished with a magnetic projectile fragment separator. However, to achieve higher beam purity, in particular for proton-rich rare isotopes, additional purification is necessary. RadiaBeam in collaboration with Michigan State University (MSU) has designed a 20.125 MHz radiofrequency (RF) fragment separator capable of producing a 4 MV kick with 18 cm aperture in order to remove contaminant isotopes based on their time of flight. In this paper, we will discuss the RF and engineering design considerations of this separator cavity.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Size and Charge Effects on Crossover of Flow Battery Reactants Evaluated by Quinone Permeabilities Through Nafion

Organic reactants are promising candidates for long-lifetime redox flow batteries, and synthetic chemistry unlocks a wide design space for new molecules. Minimizing crossover of these molecules through ion exchange membranes is one important design consideration, but the ways in which the crossover rate depends on the structure of the crossing species remain unclear. Here, we contribute a systematic evaluation of size- and charge-based effects on dilute-solution small molecule permeability through the Nafion NR212 cation exchange membrane. We found that increasing the magnitude of charge number z with the same sign as membrane fixed charges, achieved here by successive sulfonation of quinone redox cores, results in more than an order of magnitude permeability reduction per sulfonate. Size-based effects, understood by comparing the Stokes radii of the quinones studied, also reduces permeability with increasing effective molecule size, but doubling the effective size of the redox reactants resulted in a permeability decrease of less than a factor of three.

25 ENERGY STORAGE↗

The hidden value of large-rotor, tall-tower wind turbines in the United States

The significant upscaling of wind turbine size (nameplate capacity, rotor diameter, and tower height) has, to date, been driven primarily by a goal of minimizing the levelized cost of energy. But with wind’s levelized cost of energy now comparable with that of other generating resources, other design considerations besides cost-minimization have grown in importance—particularly as wind’s increasing market penetration begins to impose challenges on the electric grid. We find that taller towers and larger rotors (relative to nameplate capacity) can enhance the value of wind energy to the electricity system and provide other “hidden” benefits. Specifically, in regions where wind penetration has reached around 20%, we find a boost in wholesale market value of US$2–US$3/MWh. This is augmented by transmission, balancing, and financing benefits that sum to roughly US$2/MWh. The aggregate potential value enhancement of US$4–US$5/MWh is comparable with a 10%–15% reduction in levelized costs.

17 WIND ENERGY↗

Holo-omics for deciphering plant-microbiome interactions

Host-microbiome interactions are recognized for their importance to host health. An improved understanding of the molecular underpinnings of host-microbiome relationships will advance our capacity to accurately predict host fitness and manipulate interaction outcomes. Within the plant microbiome research field, unlocking the functional relationships between plants and their microbial partners is the next step to effectively using the microbiome to improve plant fitness. We propose that strategies that pair host and microbial datasets—referred to here as holo-omics—provide a powerful approach for hypothesis development and advancement in this area. We discuss several experimental design considerations and present a case study to highlight the potential for holo-omics to generate a more holistic perspective of molecular networks within the plant microbiome system. In addition, we discuss the biggest challenges for conducting holo-omics studies; specifically, the lack of vetted analytical frameworks, publicly available tools, and required technical expertise to process and integrate heterogeneous data. Finally, we conclude with a perspective on appropriate use-cases for holo-omics studies, the need for downstream validation, and new experimental techniques that hold promise for the plant microbiome research field. We argue that utilizing a holo-omics approach to characterize host-microbiome interactions can provide important opportunities for broadening system-level understandings and significantly inform microbial approaches to improving host health and fitness.

59 BASIC BIOLOGICAL SCIENCES↗

Design of high-deflection foils MHK applications - CFD models - RivGen turbine

The Ocean Renewable Power Company's (ORPC's) goal is to design, develop, and test hydrofoils with large deflections. The effects of the deflections on cross-flow turbine performance would be evaluated in order to inform design considerations for full-scale water turbines and other marine hydrokinetic devices. CFD Models OpenFOAM V1912 RivGen turbine

16 TIDAL AND WAVE POWER↗

On the progress of 3D-printed hydrogels for tissue engineering

Additive manufacturing or more commonly known as 3D printing, is currently driving innovations and applications in diverse fields such as prototyping, manufacturing, aerospace, education, and medicine. Recent technological and materials research breakthroughs have enabled 3D bioprinting, where biomaterials and cells are used to create scaffolds and functional living tissues (e.g. skin, cartilage, etc.). This prospective focuses on the classification and applications of hydrogels, and design considerations in their production (i.e. physical and biological parameters). Herein, the materials for 3D printing of hydrogels, such as biopolymers, synthetic polymers, and nanocomposites, are mainly discussed. More importantly, future perspectives on 3D printing hydrogels including new materials, 4D printing, emerging printing technologies, etc. and their importance in biomedical and bioengineering applications are discussed.

36 MATERIALS SCIENCE↗

Enlightened Education: Solar Engineering Design to Energize School Facilities

Here, this paper explores the potential for universities, colleges, and K-12 schools to implement solar electric infrastructure projects on their campuses that not only provide financial savings but also provide learning environments and instructional opportunities for students. A recent case study at Madison College is presented for a 1.85 MW photovoltaic system that is the largest solar rooftop installation in the State of Wisconsin. The system was designed with several unique features to facilitate public access, provide students with hands-on interaction, and compare and contrast several different types of solar equipment. Special engineering design considerations should be made when installing solar on schools, and recommended practices from the Madison College experience are detailed. Madison College completed a Solar Roadmap in order to prioritize and sequence investment in solar across the multiple buildings and campus locations operated by the college. The featured installation was the first project within that plan. A ten-step guide on how to create a solar roadmap is shared, so that other schools can learn from Madison College’s experience and replicate the process for their own institutions.

14 SOLAR ENERGY↗

ULTRAFAST HIGH-VOLTAGE KICKER SYSTEM HARDWARE FOR ION CLEARING GAPS

Ionization scattering of electron beams with residual gas molecules causes ion trapping in electron rings, both in a collider and electron cooling system. These trapped ions may cause emittance growth, tune shift, halo formation, and coherent coupled bunch instabilities. To clear the ions and prevent them from accumulating turn after turn, the gaps in a temporal structure of the beam are used. Typi- cally, the gap in the bunch train has a length of a few per- cent of the ring circumference. In those regions, the extrac- tion electrodes with high pulsed voltages are introduced. In this paper, we present the design consideration and initial test results of the high-voltage pulsed kicker hardware that includes vacuum device and pulsed voltage driver, capable of achieving over 3 kV of deflecting voltage amplitude, rise and fall times of less than 10 ns, 100 ns flat-top duration at 1.4 MHz repetition rate.

Smirnov, A.↗

Advanced sorbents for modular oxygen production for REMS gasifiers

Under a DOE funded effort, Thermosolv LLC has been developing a sorbent-based oxygen production technology for gasification and oxy-combustion applications. The sorbents utilize oxygen-storage properties of certain perovskites to (1) selectively adsorb oxygen at moderate temperature from compressed air and (2) release the adsorbed oxygen into a vacuum or a sweep gas such as CO2 and/or steam. Through cyclic operations of multiple sorbent beds such a process can be made continuous. Pressure drop across the sorbent bed and other similar design considerations dictate that the sorbent be in the form of a high surface-area-to-volume pellet and yet still possess sufficient crush strength and integrity. Process efficiency is determined by the sorption and desorption kinetics and sorbent capacity. Typical process involves cycle times in the order of 100 seconds, a time too short to fully utilize the full volume of the sorbent and the sorption capacity of the sorbent pellets. As a part of this project, Thermosolv LLC undertook the development of oxygen sorbents as a high-surface area supported sorbent on a light-weight inert support to (1) reduce the cost, (2) increase the productivity, and (3) reduce the overall weight of the reactor. Using a previously developed perovskite (LSCF 1991) with its well-characterized performance, composite sorbent pellets each consisting of an inert core coated by a thin layer of the functional perovskite material were produced. Several low-density, inexpensive inert solids supports in the 1/8”-1/4” size were selected to keep the pressure drop across the sorbent bed in the acceptable range. A number of commercial technologies including spray coating, dip coating, incipient impregnation of porous substrate followed by thermal annealing at various temperatures and duration were employed and tested to produce robust composite supported sorbent pellets. A sense of optimum coating thickness was developed by testing sorbent pellets of various increasing diameter pellets. LSCF-1991extrudates ranging in size from 1/32” to 3/16” were tested in a TGA and in a fixed-bed pressure swing test set-up for sorption/desorption cycles of interest. The data show that for the operational conditions of interest the coating thickness for a supported sorbent pellet needs to be approximately 1/32” (about 0.8 mm). Subsequent work thereby concentrated on developing composite pellets of various substrates, shapes and sizes with coating layer of about this size range. Candidate support materials were chosen based on cost, inertness, mechanical strength, thermal expansion and chemical stability with sorbent material, and in a size range to give an acceptable pressure drop in fixed-bad reactor configurations. Coating application methods used for application of the sorbent onto the support included precipitation, spray coating and dip coating from sorbent slurries and sol gels. For all coated supports where we could successfully apply a uniform coating of desired thickness with an acceptable handling performance in terms of exfoliation, TGA-based cyclic sorption/desorption testing was performed to determine cycling capacity of oxygen. Among nearly twenty different support materials tested, best adhesion performance was obtained from stainless saddle supports. In the bench-scale fixed-bad tests stainless steel saddle support composite pellets with a coating thickness in the 0.6 mm or so range, the composite sorbent pellet performance approached up to 95% of that of the 2 mm parent material pellets. In a parallel approach to reducing the cost of the sorbent, alternate sorbent formulations replacing/reducing the amount of cobalt in the LSCF family were also investigated. Successful formulations that could match the performance of LSCF 1991 were identified based on TGA cyclic tests as LSCF 1919 and LSF 1910. In the range of operational envelop of cycle times and other relevant process operating conditions, the reduced Co formulations showed comparable performance in the bench-scale fixed-bad cyclic operations. As a part of this project, we also attempted substitution of La and Sr with Ca and Ba, and Co with Mn, Ni and Cu with little success, but the overall project goal of reducing sorbent cost in terms of raw material and manufacturing expenses was successful.

01 COAL, LIGNITE, AND PEAT↗

Computational analysis of deployable wind turbine systems in defense operational energy applications.

The U.S. military has been exploring pathways to reduce the logistical burden of fuel on virtually all their missions globally. Energy harvesting of local resources such as wind and solar can help increase the resilience and operational effectiveness of military units, especially at the most forward operating bases where the fuel logistics are most challenging. This report considers the potential benefits of wind energy provided by deployable wind turbines as measured by a reduction in fuel consumption and supply convoys to a hypothetical network of Army Infantry Brigade Combat Team bases. Two modeling and simulation tools are used to represent the bases and their operations and quantify the impacts of system design variables that include wind turbine technologies, battery storage, number of turbines, and wind resource quality. The System of Systems Analysis Toolkit Joint Operational Energy Model serves as a baseline scenario for comparison. The Hybrid Optimization of Multiple Energy Resources simulation tool is used to optimize a single base within the larger Joint Operational Energy Model. The results of both tools show that wind turbines can provide significant benefits to contingency bases in terms of reduced fuel use and number of convoy trips to resupply the base. The match between the turbine design and wind resource, which is statistically low across most of the global land area, is a critical design consideration. The addition of battery storage can enhance the benefits of wind turbines, especially in systems with more wind turbines and higher wind resources. Wind turbines may also provide additional benefits to other metrics such as resilience that may be important but not fully considered in the current analysis. ACKNOWLEDGEMENTS The authors would like to thank the following individuals for their helpful support, feedback and review to improve this report: U.S. Department of Energy Wind Energy Technologies Office, Patrick Gilman and Bret Barker; Idaho National Laboratory, Jake Gentle and Bradley Whipple; The National Renewable Energy Laboratory, Robert Preus and Tony Jimenez; Sandia National Laboratories, Alan Nanco, Dennis Anderson, and Hai Le. In addition, numerous discussions with military and industry stakeholders over the year were invaluable in focusing the efforts represented in this report.

17 WIND ENERGY↗

Beam Losses for the PIP-III Linac to Recycler/Main Injector

The PIP-III linac produces 8 GeV H - beam for injection into the Recycler or Main Injector (MI). Beam losses throughout the system must remain low to ensure high intensity in the MI cycle and to manage radiation effects to acceptable levels, including enabling practical maintenance of the facility. Beam loss mechanisms in the system mageable maintStripping to H+ is needed, in a system that is vulnerable to magnetic stripping of H- in magnetic fields. The High power beam will heat stripping foils, perhaps unacceptably. The injection pulse is much longer than the MI circumference, so multiturn pulses with resulting heating and beam diffusion are required. We discuss beam loss related design considerations for the Linac-based scenario.

43 PARTICLE ACCELERATORS↗

Characterizing Shielded Special Nuclear Material by Neutron Capture Gamma-Ray Multiplicity Counting

We present a new neutron multiplicity counting analysis and measurement method for neutron-shielded fissile material using neutron-capture gamma rays. Neutrons absorbed in shielding produce characteristic gamma rays that preserve the otherwise lost neutron multiplicity signature. Neutron multiplicity counting provides estimates of fission parameters, such as neutron leakage multiplication, spontaneous fissioner (e.g. Pu-240) mass, and (α,n) ratio. Standard neutron multiplicity counting can incorporate the new neutron-capture gamma-ray multiplicity counting technique to characterize previously degenerate or intractable source configurations by maximizing the multiplicity signature. The new method decouples neutron source-detector interferences, such as reflection and thermalization time in the detector, that could improve measurements of the mean neutron lifetime. We also develop a detector prototype for the multiplicity counting of neutron-capture gamma rays and present detector design considerations, such as detection material and shielding, to optimize the detection of the 2.2 MeV hydrogen capture gamma ray. We simulate the prototype neutron- capture gamma-ray multiplicity counter against the BeRP ball in polyethylene shells to inform future measurements.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Electrochemical CO 2 Utilization: Scalable System Operation for Formic Acid Production

In recent years, research into the electrochemical reduction of CO 2 has grown exponentially. Formic acid (FA) has become a particular value product from CO 2 due to its versatility [1], optimal atom economy [2], and thermodynamic favorable [3]. FA can be produced electrochemically via a direct two-electron transfer process involving CO 2 with a proton source, requiring less energy input and fewer reaction steps than the conventional Kemira process. However, product selectivity, electrode stability, and low faradic efficiency due to increased resistance under constant current, remain key issues for CO 2 reduction to FA [4]. University of Kentucky’s Center for Applied Energy Research (UK CAER) is currently investigating reactor designs to address the challenges associated with electrochemical CO 2 conversion to FA [5]. The current reactor system employs: (1) an organic-based charge carrier which shuttles charge directly to the catalyst to enable CO 2 reduction to FA; (2) novel electrode materials to mitigate large voltages and improve conductivity; and (3) a flow system which not only allows for the volumetric scale-up of both charge carrier and catalyst, but also decouples the charger carrier re-energized and FA production processes to protect the catalyst’s stability due to overpotential. Through careful adjustment of electrode, charge carrier, and electrolyte selection, cell resistances have decreased by over 15%, facilitating conduction necessary for effective CO 2 reduction to FA. The system uses a highly specific engineered catalyst, which has produced over 100 mM FA at a rate of over 10 mM FA/hour following the aforementioned electrode/charge carrier changes. System design considerations (flow rate, bulk volume) and modeling of the system will also be discussed.

20 FOSSIL-FUELED POWER PLANTS↗

Carbon Utilization: Electrochemical Approach Using Novel Catalyst and System Integration

The environmental footprint from power generation can be mitigated by capturing emitted carbon dioxide (CO2) and converting it to value-added fuel sources. A multitude of different fuels can be produced from CO2 depending on the chemical reaction catalysts. Typically, these pathways can be developed electrochemically, or through hydrogenation. In recent years the electrochemical reduction of CO2 has grown exponentially, as it has shown potential to decrease atmospheric pollution and provide an additional means of on-demand electricity storage. Formic acid (FA) in particular has industrial applications such as in fuel cells or as a hydrogen storage medium, and requires a lower thermodynamic energy input than any other fuel produced for electrochemical CO2 reduction. However, product selectivity remains a challenge for conventional electrocatalysts, making FA production efficiencies above 50% difficult. To address the challenge of catalytic selectivity, UK CAER employs enzymatic catalysts to facilitate the FA production and minimize unwanted byproducts. Our process couples the catalyst with a charge mediator which is necessary to shuttle electrons, and an electrolyte pH buffer to prevent the catalyst from degrading. Presently, production efficiencies have approached 60% at a rate of over 10 mM FA/hour. System design considerations (flow rate, bulk volume) will also be discussed.

01 COAL, LIGNITE, AND PEAT↗

Imaging Station Multi-Foil Target

The Axis II Downstream Transport (DST) of the Dual Axis Radiographic Hydrodynamic Testing (DARHT) Facility is the final subassembly of the particle accelerator whose primary objective is to focus the 4-pulse beam as it enters the Target Region. Before the beam reaches the Target Region, it passes through two imaging stations located in the DST. At Imaging Station E (ISE) and Imaging Station C (ISC), diagnostics are conducted and experimenters study beam physics using specialized targets. Different targets are used depending on the objective of the study. The desire to conduct specific experiments has driven a need for a multi-foil target. This new design has been engineered to allow for new capabilities, and diagnostics to be studied at ISC. To accommodate new parameters, three different configurations have been conceived. Although each of the three designs differ from each other, their function and purpose remain consistent. Each target is engineered to secure a variable amount of target foils at variable spacing while Imaging Station experiments are conducted. Beam diagnostics and data from the targets are analyzed through various sized viewports on the imaging stations. The objective of this technical note is to document the purpose and functionality of the targets. Design considerations, assembly instructions, and maintenance recommendations are also discussed. Additionally, each target and its respective advantages and disadvantages are covered in detail.

43 PARTICLE ACCELERATORS↗

Decarbonizing HVAC and Water Heating in Commercial Buildings

This report is intended to provide building owners and facilities engineers with heating electrification options and design considerations, as well as additional resources on key topics. The document focuses on the electrification of space heating and water heating loads using electric heat pump systems.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Fast BLT Code

This note discusses numerical algorithmic software design considerations and performance estimates for a fast BLT coupling code [1] written in c++. The aim of this code is to conduct faster parameter studies over line orientations. The original matlab code was written by Mike Rivera. Art Barnes ported this code to julia. I rewrote portions of the code for speed improvement, mainly to eliminate some redundant computation when calculating many line orientations. But this code is still far from optimal.

97 MATHEMATICS AND COMPUTING↗