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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 919 records · Page 51
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Quantification of spatial and seasonal trends in the atmosphere and construction of statistical models for infrasonic propagation

SUMMARY Infrasonic waves are influenced by variations in the density, pressure and temperature as well as the ambient winds. Modelling infrasonic propagation can be challenging due to the dynamic nature of the atmosphere as well as the sparseness of measurements which result in variability and notable uncertainty. A framework is presented to quantify spatial and seasonal trends in atmospheric structure via analysis of the effective sound speed profile and identification of temporal trends in the middle atmospheric waveguide produced by the circumpolar vortex winds. Seasonal definitions identifying typical atmospheric structures during the summer, winter and spring/fall transition periods are identified using atmospheric data from 2010 through 2020. Seasonal trend analysis is conducted for a number of locations across the contiguous United States to quantify spatial variations in atmospheric structure that impact infrasonic propagation. For each season and location, empirical orthogonal function analysis is used to reduce the historical archive of atmospheric data into a smaller representative set that can be analysed using numerical tools more efficiently. Infrasonic ray tracing and finite-frequency modal propagation analyses are applied to construct propagation path geometry and transmission loss statistics which are useful in localization and yield estimation for infrasonic sources, respectively. An example application is detailed in which transmission loss statistics are combined with an explosive source model and noise statistics to quantify the capability of a network to detect nearby sources.

58 GEOSCIENCES↗
DOE OSTI2020

CoreCruncher : Fast and Robust Construction of Core Genomes in Large Prokaryotic Data Sets

The core genome represents the set of genes shared by all, or nearly all, strains of a given population or species of prokaryotes. Inferring the core genome is integral to many genomic analyses, however, most methods rely on the comparison of all the pairs of genomes; a step that is becoming increasingly difficult given the massive accumulation of genomic data. Here, we present CoreCruncher; a program that robustly and rapidly constructs core genomes across hundreds or thousands of genomes. CoreCruncher does not compute all pairwise genome comparisons and uses a heuristic based on the distributions of identity scores to classify sequences as orthologs or paralogs/xenologs. Although it is much faster than current methods, our results indicate that our approach is more conservative than other tools and less sensitive to the presence of paralogs and xenologs. CoreCruncher is freely available from: https://github.com/lbobay/CoreCruncher. CoreCruncher is written in Python 3.7 and can also run on Python 2.7 without modification. It requires the python library Numpy and either Usearch or Blast. Certain options require the programs muscle or mafft.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Construction, characterization and crystal structure of a fluorescent single-chain Fv chimera

In vitro display technologies based on phage and yeast have a successful history of selecting single-chain variable fragment (scFv) antibodies against various targets. However, single-chain antibodies are often unstable and poorly expressed in Escherichia coli. Here, we explore the feasibility of converting scFv antibodies to an intrinsically fluorescent format by inserting the monomeric, stable fluorescent protein named thermal green, between the light- and heavy-chain variable regions. Our results show that the scTGP format maintains the affinity and specificity of the antibodies, improves expression levels, allows one-step fluorescent assay for detection of binding and is a suitable reagent for epitope binning. We also report the crystal structure of an scTGP construct that recognizes phosphorylated tyrosine on FcεR1 receptor of the allergy pathway.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Framework for phase transitions between the Maxwell and Gibbs constructions at finite temperature

The characteristics of the hadron-to-quark first-order phase transition differ depending on whether charge neutrality is locally or globally fulfilled. In 𝛽-equilibrated matter, these two possibilities correspond to the Maxwell and Gibbs constructions. Recently, we presented a new framework in which a continuously varying parameter allows one to describe a first-order phase transition in intermediate scenarios to the two extremes of fully local and fully global charge neutrality. In this work, we extend the previous framework to finite temperatures and out-of-𝛽 equilibrium conditions, making it available for simulations of core-collapse supernovae and binary neutron star mergers. We investigate its impact on key thermodynamic quantities across a range of baryon densities, temperatures, and electron fractions. We find that when matter is not in 𝛽 equilibrium, the pressure in the mixed phase is not constant even for the case of fully local charge neutrality. Moreover, we compute the thermal index using three different approaches, demonstrating that the finite-temperature extension of an equation of state using a constant thermal index can be ill defined when applied to the mixed phase.

QCD phase transitions↗
DOE OSTI2020

Odd fracton theories, proximate orders, and parton constructions

The Lieb-Schultz-Mattis (LSM) theorem implies that gapped phases of matter must satisfy nontrivial conditions on their low-energy properties when a combination of lattice translation and U(1) symmetry are imposed. We describe a framework to characterize the action of symmetry on fractons and other subdimensional fractional excitations, and use this together with the LSM theorem to establish that X-cube fracton order can occur only at integer or half-odd-integer filling. Using explicit parton constructions, we demonstrate that “odd” versions of X-cube fracton order can occur in systems at half-odd-integer filling, generalizing the notion of odd Z 2 gauge theory to the fracton setting. At half-odd-integer filling, exiting the X-cube phase by condensing fractional quasiparticles leads to symmetry breaking, thereby allowing us to identify a class of conventionally ordered phases proximate to phases with fracton order. We leverage a dual description of one of these ordered phases to show that its topological defects naturally have restricted mobility. In conclusion, condensing pairs of these defects then leads to a fracton phase, whose excitations inherit these mobility restrictions.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2021

Adiabatic construction of hierarchical quantum Hall states

We propose an exact model of anyon ground states including higher Landau levels, and use it to obtain fractionally quantized Hall states at filling fractions ν = p/(p(m - 1) + 1) with m odd, from integer Hall states at ν = p through adiabatic localization of magnetic flux. For appropriately chosen two-body potential interactions, the energy gap remains intact during the process. The construction hence establishes the existence of incompressible states at these fillings.

36 MATERIALS SCIENCE↗
DOE OSTI2022

An ℓ 0 ℓ 2 -norm regularized regression model for construction of robust cluster expansions in multicomponent systems

In this work we introduce ℓ 0 ℓ 2 -norm regularization and hierarchy constraints into linear regression for the construction of cluster expansions to describe configurational disorder in materials. The approach is implemented through mixed integer quadratic programming (MIQP). The ℓ 2 -norm regularization is used to suppress intrinsic data noise, while the ℓ 0 -norm is used to penalize the number of nonzero elements in the solution. The hierarchy relation between clusters imposes relevant physics and is naturally included by the MIQP paradigm. As such, sparseness and cluster hierarchy can be well optimized to obtain a robust, converged set of effective cluster interactions with improved physical meaning. We demonstrate the effectiveness of ℓ 0 ℓ 2 -norm regularization in two high-component disordered rocksalt cathode material systems, where we compare the cross-validation, convergence speed, and the reproduction of phase diagrams, voltage profiles, and Li-occupancy energies with those of the conventional ℓ 1 -norm regularized cluster expansion models.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2022

Variational approaches to constructing the many-body nuclear ground state for quantum computing

Here, we explore the preparation of specific nuclear states on gate-based quantum hardware using variational algorithms. Large-scale classical diagonalizations of the nuclear shell model have reached sizes of 10 9 –10 10 basis states but are still severely limited by computational resources. Quantum computing can, in principle, solve such systems exactly with exponentially fewer resources than classical computing. Exact solutions for large systems require many qubits and large gate depth, but variational approaches can effectively limit the required gate depth. We use the unitary coupled cluster approach to construct approximations of the ground-state vectors, later to be used in dynamics calculations. The testing ground is the phenomenological shell model space, which allows us to mimic the complexity of the internucleon interactions. We find that often one needs to minimize over a large number of parameters, using a large number of entanglements that makes the application on existing hardware challenging. Prospects for rapid improvements with more capable hardware are, however, very encouraging.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

Constructing angular distributions of neutrinos in core-collapse supernovae from zeroth and first moments calibrated by full Boltzmann neutrino transport

Two-moment neutrino transport methods have been widely used for developing theoretical models of core-collapse supernovae (CCSN), since they substantially reduce the computational burden inherent in the multidimensional neutrino-radiation hydrodynamical simulations. The approximation, however, comes at a price; the detailed structure of angular distribution of neutrinos is sacrificed, that is the main drawback of this approach. In this paper, we develop a novel method by which to construct angular distributions of neutrinos from the zeroth and first angular moments. In our method, the angular distribution is expressed with two quadratic functions of the neutrino angle in a piecewise fashion. We determine the best parameters in the fitting function by comparing to the neutrino data in a spherically symmetric CCSN model with full Boltzmann neutrino transport. We demonstrate the capability of our method by using our recent 2D CCSN model. In this work, we find that the essential features of the angular distributions can be well reconstructed, whereas the angular distributions of incoming neutrinos tend to have large errors that increase with flux factor ($\textit{κ}$). This issue originates from the insensitiveness of incoming neutrinos to $\textit{κ}$, that is an intrinsic limitation in moment methods. Based on the results of the demonstration, we assess the reliability of electron- neutrinos lepton number (ELN)-crossing searches with the two-moment neutrino transport. This analysis is complementary to our [L. Johns and H. Nagakura arXiv:2104.04106] that scrutinizes the limitation of crossing searches with a few moments. We find that the systematic errors of angular distributions for incoming neutrinos lead to misjudgements of the crossing at $\textit{κ}$ ≳ 0.5. This casts doubt on the results of ELN-crossing searches based on two-moment methods in some previous studies.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Momentum shift and on-shell constructible massive amplitudes

We construct tree-level amplitude for massive particles using on-shell recursion relations based on two classes of momentum shifts: an all-line transverse shift that deforms momentum by its transverse polarization vector, and a massive Britto-Cachazo-Feng-Witten-type shift. We illustrate that these shifts allow us to correctly calculate four-point and five-point amplitudes in massive QED, without an ambiguity associated with the contact terms that may arise from a simple “gluing” of lower-point on-shell amplitudes. We discuss various aspects and applicability of the two shifts, including the large-z behavior and complexity scaling. We show that there exists a “good” all-line transverse shift for all possible little group configurations of the external particles, which can be extended to a broader class of theories with massive particles such as massive QCD and theories with massive spin-1 particles. The massive Britto-Cachazo-Feng-Witten-type shift enjoys more simplicity, but a “good” shift does not exist for all the spin states due to the specific choice of spin axis.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

Fractonic coset construction for spontaneously broken translations

We study the homogeneous breaking of spatial translation symmetry concomitantly with the spontaneous breaking of other internal and spacetime symmetries, including dilations. We use the symmetry-breaking pattern as the only input to derive, via the coset construction, general effective field theories for the symmetry-originated modes associated with Goldstone’s theorem, namely the Nambu-Goldstone candidates. Through explicit computations, we show that integrating out the explicit massive Nambu-Goldstone candidates or imposing symmetric constraints, namely the inverse Higgs constraints, to express massive modes in terms of the massless ones leads to physically distinct effective field theories. This sensitivity to the chosen method can be traced back to the homogeneous breaking of translations, the homogeneous aspect of the breaking induces a mixing between internal and spacetime symmetries at the level of the Lie algebra. This, in turn, leads to subtle discussions about the inverse Higgs constraints, in particular that they lead to a loss of generality in our specific examples. The derived general effective field theories also give rise to a broad class of theories exhibiting emergent enhanced shift symmetries, which constrain the mobility of the modes. The latter are referred to as fractonic modes. Published by the American Physical Society 2025

Chavda, Ameya (ORCID:0000000211731605)↗
DOE OSTI2017

Worldline construction of a covariant chiral kinetic theory

Here, we discuss a novel worldline framework for computations of the chiral magnetic effect (CME) in ultrarelativistic heavy-ion collisions. Starting from the fermion determinant in the QCD effective action, we show explicitly how its real part can be expressed as a supersymmetric worldline action of spinning, colored, Grassmannian particles in background fields. Restricting ourselves for simplicity to spinning particles, we demonstrate how their constrained Hamiltonian dynamics arises for both massless and massive particles. In a semiclassical limit, this gives rise to the covariant generalization of the Bargmann-Michel-Telegdi equation; the derivation of the corresponding Wong equations for colored particles is straightforward. In a previous paper [N. Mueller and R. Venugopalan, arXiv:1701.03331.], we outlined how Berry’s phase arises in a nonrelativistic adiabatic limit for massive particles. We extend the discussion here to systems with a finite chemical potential. We discuss a path integral formulation of the relative phase in the fermion determinant that places it on the same footing as the real part. We construct the corresponding anomalous worldline axial-vector current and show in detail how the chiral anomaly appears. Our work provides a systematic framework for a relativistic kinetic theory of chiral fermions in the fluctuating topological backgrounds that generate the CME in a deconfined quark-gluon plasma. Finally, we outline some further applications of this framework in many-body systems.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2022

Construction of Fractal Order and Phase Transition with Rydberg Atoms

We propose the construction of a many-body phase of matter with fractal structure using arrays of Rydberg atoms. The degenerate low energy excited states of this phase form a self-similar fractal structure. This phase is analogous to the so-called “type-II fracton topological states.” The main challenge in realizing fractonlike models in standard condensed matter platforms is the creation of multispin interactions, since realistic systems are typically dominated by two-body interactions. In this work, we demonstrate that the van der Waals interaction and experimental tunability of Rydberg-based platforms enable the simulation of exotic phases of matter with fractal structures, and the study of a quantum phase transition involving a fractal ordered phase.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2025

Metriplectic four-bracket algorithm for constructing thermodynamically consistent dynamical systems

A unified thermodynamic algorithm is presented for constructing thermodynamically consistent dynamical systems, i.e., systems that have Hamiltonian and dissipative parts that conserve energy while producing entropy. The algorithm is based on the metriplectic 4-bracket given in Morrison and Updike [Phys. Rev. E 109, 045202 (2024)]. A feature of the unified thermodynamic algorithm is the force-flux relation 𝐉 𝛼 =−𝐿 𝛼⁢𝛽 𝛁(𝛿⁢𝐻⁡/𝛿⁢𝜉 𝛽 ) for phenomenological coefficients 𝐿 𝛼⁢𝛽 , Hamiltonian 𝐻, and dynamical variables 𝜉 𝛽 . The algorithm is applied to the Navier-Stokes-Fourier, the Cahn-Hilliard-Navier-Stokes, and Brenner-Navier-Stokes-Fourier systems, and significant generalizations of these systems are obtained.

Multiphase flows↗
DOE OSTI2015

Streamlined Construction of the Cyanobacterial CO 2 -Fixing Organelle via Protein Domain Fusions for Use in Plant Synthetic Biology

Bacterial microcompartments (BMCs) are self-assembling organelles that sequester segments of biochemical pathways within a protein shell. Given their functional diversity, BMCs constitute a rich source of metabolic modules for applications in synthetic biology. The carboxysome, the cyanobacterial BMC for CO 2 fixation, has attracted significant attention as a target for installation into chloroplasts and serves as the foundation for introducing other types of BMCs into plants. Carboxysome assembly involves a series of protein-protein interactions among at least six gene products to form a metabolic core, around which the shell assembles. This complexity creates significant challenges for the transfer, regulation, and assembly of carboxysomes, or any of the myriad of functionally distinct BMCs, into heterologous systems. To overcome this bottleneck, we constructed a chimeric protein in the cyanobacterium Synechococcus elongatus that structurally and functionally replaces four gene products required for carboxysome formation. In this work, the protein was designed based on protein domain interactions in the carboxysome core. The resulting streamlined carboxysomes support photosynthesis. This strategy obviates the need to regulate multiple genes and decreases the genetic load required for carboxysome assembly in heterologous systems. More broadly, the reengineered carboxysomes represent a proof of concept for a domain fusion approach to building multifunctional enzymatic cores that should be generally applicable to the engineering of BMCs for new functions and cellular contexts.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

eCC++ : A Compiler Construction Framework for Embedded Domain-Specific Languages

eCC++ is a new compiler construction framework for embedding domain-specific programming languages within C++. That is, the host language is C++, the guest language is the DSL to be embedded in C++, and eCC++ is the tool that enables the embedding. The eCC++ framework is composed of three main components: a front-end, an API for program verification based on a functional and declarative intermediate representation (IR), and a Multi-Level Intermediate Representation (MLIR) code generator. The eCC++ front-end consists of a library of C++ classes and operators that can be used to define the guest language. Guest sources are compiled with any standard C++ compiler, and when run, the resulting executable generates an eCC++ IR representation of the program, which can be verified within the eCC++ framework. Finally, eCC++ allows for high-level and domain-specific optimizations before generating MLIR. In summary, eCC++ aims to act as a generic front-end that enables embedding guest languages into C++, and provides necessary compiler technology for program verification, targeting the existing capabilities in the MLIR infrastructure. The paper evaluates the eCC++ expressiveness and usability describing the process of embedding GraphIt, a high-performance graph language in C++.

Gonzalez Tallada, Marc↗
DOE OSTI2018

Constructing Convex Inner Approximations of Steady-State Security Regions

Here, we propose a scalable optimization framework for estimating convex inner approximations of the steady-state security sets. The framework is based on Brouwer fixed point theorem applied to a fixed-point form of the power flow equations. It establishes a certificate for the self-mapping of a polytope region constructed around a given feasible operating point. This certificate is based on the explicit bounds on the nonlinear terms that hold within the self-mapped polytope. The shape of the polytope is adapted to find the largest approximation of the steady-state security region. While the corresponding optimization problem is nonlinear and non-convex, every feasible solution found by local search defines a valid inner approximation. The number of variables scales linearly with the system size, and the general framework can naturally be applied to other nonlinear equations with affine dependence on inputs. Test cases, with the system sizes up to 1354 buses, are used to illustrate the scalability of the approach. The results show that the approximated regions are not unreasonably conservative and that they cover substantial fractions of the true steady-state security regions for most medium-sized test cases.

42 ENGINEERING↗
DOE OSTI2024

Visual Analytics of Multivariate Networks With Representation Learning and Composite Variable Construction

Multivariate networks are commonly found in real-world data-driven applications. Uncovering and understanding the relations of interest in multivariate networks is not a trivial task. This article presents a visual analytics workflow for studying multivariate networks to extract associations between different structural and semantic characteristics of the networks (e.g., what are the combinations of attributes largely relating to the density of a social network?). The workflow consists of a neural-network-based learning phase to classify the data based on the chosen input and output attributes, a dimensionality reduction and optimization phase to produce a simplified set of results for examination, and finally an interpreting phase conducted by the user through an interactive visualization interface. A key part of our design is a composite variable construction step that remodels nonlinear features obtained by neural networks into linear features that are intuitive to interpret. We demonstrate the capabilities of this workflow with multiple case studies on networks derived from social media usage and also evaluate the workflow with qualitative feedback from experts.

97 MATHEMATICS AND COMPUTING↗