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At least 919 records · Page 51
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Zymomonas diversity and potential for biofuel production

Abstract Background Zymomonas mobilis is an aerotolerant α-proteobacterium, which has been genetically engineered for industrial purposes for decades. However, a comprehensive comparison of existing strains on the genomic level in conjunction with phenotype analysis has yet to be carried out. We here performed whole-genome comparison of 17 strains including nine that were sequenced in this study. We then compared 15 available Zymomonas strains for their natural abilities to perform under conditions relevant to biofuel synthesis. We tested their growth in anaerobic rich media, as well as growth, ethanol production and xylose utilization in lignocellulosic hydrolysate. We additionally compared their tolerance to isobutanol, flocculation characteristics, and ability to uptake foreign DNA by electroporation and conjugation. Results Using clustering based on 99% average nucleotide identity (ANI), we classified 12 strains into four clusters based on sequence similarity, while five strains did not cluster with any other strain. Strains belonging to the same 99% ANI cluster showed similar performance while significant variation was observed between the clusters. Overall, conjugation and electroporation efficiencies were poor across all strains, which was consistent with our finding of coding potential for several DNA defense mechanisms, such as CRISPR and restriction–modification systems, across all genomes. We found that strain ATCC31821 (ZM4) had a more diverse plasmid profile than other strains, possibly leading to the unique phenotypes observed for this strain. ZM4 also showed the highest growth of any strain in both laboratory media and lignocellulosic hydrolysate and was among the top 3 strains for isobutanol tolerance and electroporation and conjugation efficiency. Conclusions Our findings suggest that strain ZM4 has a unique combination of genetic and phenotypic traits that are beneficial for biofuel production and propose investing future efforts in further engineering of ZM4 for industrial purposes rather than exploring new Zymomonas isolates.

09 BIOMASS FUELS↗
DOE OSTI2023

Pegasus IV: Discovery and Spectroscopic Confirmation of an Ultra-faint Dwarf Galaxy in the Constellation Pegasus

We report the discovery of Pegasus IV, an ultra-faint dwarf galaxy found in archival data from the Dark Energy Camera processed by the DECam Local Volume Exploration Survey. Pegasus IV is a compact, ultra-faint stellar system ( pc; M $_{V}$ = −4.25 ± 0.2 mag) located at a heliocentric distance of . Based on spectra of seven nonvariable member stars observed with Magellan/IMACS, we confidently resolve Pegasus IV’s velocity dispersion, measuring km s$^{−1}$ (after excluding three velocity outliers); this implies a mass-to-light ratio of for the system. From the five stars with the highest signal-to-noise spectra, we also measure a systemic metallicity of [Fe/H] = dex, making Pegasus IV one of the most metal-poor ultra-faint dwarfs. We tentatively resolve a nonzero metallicity dispersion for the system. These measurements provide strong evidence that Pegasus IV is a dark-matter-dominated dwarf galaxy, rather than a star cluster. We measure Pegasus IV’s proper motion using data from Gaia Early Data Release 3, finding (μ $_{α*}$, μ $_{δ}$) = (0.33 ± 0.07, −0.21 ± 0.08) mas yr$^{−1}$. When combined with our measured systemic velocity, this proper motion suggests that Pegasus IV is on an elliptical, retrograde orbit, and is currently near its orbital apocenter. Lastly, we identify three potential RR Lyrae variable stars within Pegasus IV, including one candidate member located more than 10 half-light radii away from the system’s centroid. The discovery of yet another ultra-faint dwarf galaxy strongly suggests that the census of Milky Way satellites is still incomplete, even within 100 kpc.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Shallow cloud variability in Houston, Texas, during the ESCAPE and TRACER field experiments

Shallow convection plays an important role in Earth's climate system by regulating the vertical transport of heat, moisture, and momentum in the lower troposphere. Aerosols, large-scale meteorology, and low-level convergence influence the spatiotemporal variability in shallow convection, and the coastal urban area of Houston, Texas, is an ideal laboratory to investigate these complex interactions. Here, geostationary satellite and ground-based radar observations from June to September 2022 during the TRacking Aerosol Convection interactions ExpeRiment (TRACER) and Experiment of Sea Breeze Convection, Aerosols, Precipitation, and Environment (ESCAPE) field campaigns are used to characterize the spatial coverage, vertical extent, and precipitation fraction of shallow convective clouds. The fused operational remote sensing datasets over a 250 km × 250 km domain are evaluated against profiling observations. The domain-wide diurnal shallow cloud fractions are used to identify four distinct modes of shallow convection. In all clusters, the domain-wide cloud fractions are consistently higher than the domain-wide precipitation fractions, and shallow cloud fractions are higher over water than they are over land, while the shallow precipitation fractions show the opposite behavior. In the two modes with minimal deep cloud activity, shallow cloud frequency is highest over ocean in the early morning, and there is a transition to higher shallow cloud frequency over land by the afternoon in one cluster or to high shallow cloud frequencies everywhere by the afternoon in the other. Lastly, we find regions with higher shallow cloud top heights and a large region along the coastline where shallow clouds are more likely to precipitate.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1982

H0, q0 and the local velocity field

An attempt is made to find a systematic deviation from linearity for distances that are under the control of the Virgo cluster, and to determine the value of the mean random motion about the systematic flow, in order to improve the measurement of the Hubble and the deceleration constants. The velocity-distance relation for large and intermediate distances is studied, and type I supernovae are calibrated relatively as distance indicators and absolutely to obtain a new value for the Hubble constant. Methods of determining the deceleration constant are assessed, including determination from direct measurement, mean luminosity density, virgocentric motion, and the time scale test. The very local velocity field is investigated, and a solution is preferred with a random peculiar radial velocity of very nearby field galaxies of 90-100 km/s, and a Virgocentric motion of the local group of 220 km/s, leading to an underlying expansion rate of 55, in satisfactory agreement with the global value.

Sandage, A.↗
NASA NTRS1987

1.4 GHz continuum sources in the Cancer cluster

Results of 1.4-GHz continuum observations are presented for 11 VLA fields, using the D-configuration, which contain the A group of the Cnc cluster (CC). Sixteen Zwicky spiral galaxies in the CC were detected, but no ellipticals, confirming the finding that spiral galaxies with close companions tend to have enhanced radio emission. Over 200 continuum sources beyond the CC are tabulated. The spectral index (relative to 610 MHz) is given for many of the sources, including some of the Zwicky galaxies. There is a suggestion for a nonuniform number surface-density distribution of the sources, not correlated with the CC. Possible predictions of such nonuniformities, from assumptions on 'super-superclusters', are discussed.

Salpeter, E. E.↗
NASA NTRS2007

Scaling Relations from Sunyaev-Zel'dovich Effect and Chandra X-ray Measurements of High-Redshift Galaxy Clusters

We present Sunyaev-Zel'dovich Effect (SZE) scaling relations for 38 massive galaxy clusters at redshifts 0.14 less than or equal to z less than or equal to 0.89, observed with both the Chandra X-ray Observatory and the centimeter-wave SZE imaging system at the BIMA and OVRO interferometric arrays. An isothermal ,Beta-model with central 100 kpc excluded from the X-ray data is used to model the intracluster medium and to measure global cluster properties. For each Cluster, we measure the X-ray spectroscopic temperature, SZE gas mass, total mass. and integrated Compton-gamma parameters within r(sub 2500). Our measurements are in agreement with the expectations based on a simple self-similar model of cluster formation and evolution. We compare the cluster properties derived from our SZE observations with and without Chandra spatial and spectral information and find them to be in good agreement: We compare our results with cosmological numerical simulations, and find that simulations that include radiative cooling, star formation and feedback match well both the slope and normalization of our SZE scaling relations.

Bonamente, Massimiliano↗
NASA NTRS2008

Scaling Relations from Sunyaev-Zel'dovich Effect and Chandra X-Ray Measurements of High-Redshift Galaxy Clusters

We present Sunyaev-Zel'dovich Effect (SZE) scaling relations for 38 massive galaxy clusters at redshifts 0.14 less than or equal to z less than or equal to 0.89, observed with both the Chandra X-ray Observatory and the centimeter-wave SZE imaging system at the BIMA and OVRO interferometric arrays. An isothermal Beta-model with the central 100 kpc excluded from the X-ray data is used to model the intracluster medium and to measure global cluster properties. For each cluster, we measure the X-ray spectroscopic temperature, SZE gas mass, total mass, and integrated Compton gamma-parameters within r(sub 2500). Our measurements are in agreement with the expectations based on a simple self-similar model of cluster formation and evolution. We compare the cluster properties derived from our SZE observations with and without Chandra spatial and spectral information and find them to be in good agreement. We compare our results with cosmological numerical simulations and find that simulations that include radiative cooling, star formation, and feedback match well both the slope and normalization of our SZE scaling relations.

Bonamente, Massimiliano↗
NASA NTRS2019

Sub-Eddington Supermassive Black Hole Activity in Fornax Early-type Galaxies

We characterize the incidence and intensity of low-level supermassive black hole activity within the Fornax cluster, through X-ray observations of the nuclei of 29 quiescent early-type galaxies. Using the Chandra X-ray Telescope, we target 17 galaxies from the Hubble Space Telescope Fornax Cluster Survey, down to a uniform (3σ) limiting X-ray luminosity threshold of 5 x 10^(38) erg/s, which we combine with deeper, archival observations for an additional 12 galaxies. A nuclear X-ray point source is detected in 11 out of 29 targets. After accounting for the low-mass X-ray binary contamination to the nuclear X-ray signal, the X-ray active fraction is measured at 26.6% ± 9.6%. The results from this analysis are compared to similar investigations targeting quiescent early types in the Virgo cluster, as well as the field. After correcting for the different mass distributions, the measured Fornax active fraction is less than the field fraction, at more than 3σ, confirming that the funneling of gas to the nuclear regions of cluster members is inhibited compared to those galaxies in the field. At the same time, we find no statistically significant difference between Fornax and Virgo galaxies, with only marginal evidence for a lower active fraction in Fornax (1σ); if real, owing to Fornaxʼs higher galaxy number density, this could indicate that galaxy–galaxy interactions are more effective at gas removal than galaxy-gas effects.

Nathan Lee↗
DOE OSTI2026

X‑ray Coherent Diffractive Imaging of Large Helium Nanodroplets Doped with Small Molecules

We report the first X-ray coherent diffractive imaging experiment on molecule-doped helium nanodroplets. It complements previous work, where we reported single-shot X-ray coherent diffractive imaging studies of Xe dopant clusters formed in 4He and 3He droplets. These noble gas clusters were used to visualize the impact of rotational excitation of the droplets on the spatial distribution of atomic dopants within the droplets, and to study the differences and connections between quantum and classical droplet rotational motion. Here, we expand our studies to the molecular dopants CF4, CHF3, CH3CN, and SF6, imaged with 1.5 keV photons. We find multiple Bragg spots in the diffraction patterns of molecule-doped droplets with radii of approximately 600 nm, which provide evidence that molecules form elongated clusters with preferential alignment along the angular momentum axis of the 4He droplets, in agreement with our previous results on the aggregation of Xe clusters on quantum vortices. Real-space reconstructions of molecular dopant cluster density profiles are obtained for droplets with smaller radii of approximately 300 nm. The diffuse images suggest the formation of low-density, potentially porous, molecular clusters upon aggregation at T = 0.4 K in 4He droplets. In the normal fluid 3He droplets, molecules aggregate into loose clusters on the droplets' equator, similar to previous observations for Xe atoms. Time-of-flight mass spectra reveal that the doped helium nanodroplet moieties fragment extensively into constituent atomic ions, producing only a small fraction of molecular fragment ions. The findings are discussed in the context of previously proposed schemes to use He droplets as potential tamper materials for ultrafast X-ray imaging experiments.

Feinberg, AlexandraJ↗
DOE OSTI2021

Is Deprotonation of the Oxygen-Evolving Complex of Photosystem II during the S 1 → S 2 Transition Suppressed by Proton Quantum Delocalization?

We address the protonation state of the water-derived ligands in the oxygen-evolving complex (OEC) of photosystem II (PSII), prepared in the S 2 state of the Kok cycle. We perform quantum mechanics/molecular mechanics calculations of isotropic proton hyperfine coupling constants, with direct comparisons to experimental data from two-dimensional hyperfine sublevel correlation (HYSCORE) spectroscopy and extended X-ray absorption fine structure (EXAFS). We find a low-barrier hydrogen bond with significant delocalization of the proton shared by the water-derived ligand, W1, and the aspartic acid residue D1–D61 of the D1 polypeptide. The lowering of the zero-point energy of a shared proton due to quantum delocalization precludes its release to the lumen during the S 1 → S 2 transition. Retention of the proton facilitates the shuttling of a proton during the isomerization of the tetranuclear manganese–calcium–oxo (Mn 4 Ca–oxo) cluster, from the “open” to “closed” conformation, a step suggested to be necessary for oxygen evolution from previous studies. Our findings suggest that quantum-delocalized protons, stabilized by low-barrier hydrogen bonds in model catalytic systems, can facilitate the accumulation of multiple oxidizing equivalents at low overpotentials.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Photoelectron Spectroscopy and Computational Study on Microsolvated [B 10 H 10 ] 2– Clusters and Comparisons to Their [B 12 H 12 ] 2– Analogues

Microhydrated closo-Boranes have attracted great interests due to their superchaotropic activity related to well-known Hofmeister effect and important applications in biomedical and battery fields. In this work, we report a combined negative ion photoelectron spectroscopy and quantum chemical investigation on hydrated closo-decaborate clusters [B 10 H 10 ] 2- ·nH 2 O (n = 1 – 7) with a direct comparison to their analogues [B 12 H 12 ] 2- ·nH 2 O and free water clusters. A single H 2 O molecule is found sufficient to stabilize the intrinsically unstable [B 10 H 10 ] 2- dianion. The first two water molecules strongly interact with the solute forming B-H···H-O dihydrogen bonds while additional water molecules show substantially reduced binding energies. Unlike [B 12 H 12 ] 2- ·nH 2 O possessing highly structured water network with the attached H 2 O molecules arranged in a unified pattern by maximizing B-H···H-O dihydrogen bonding, distinct structural arrangements of the water clusters within [B 10 H 10 ] 2– ·nH 2 O are achieved with the water cluster networks from trimer to heptamer resembling free water clusters. Such a distinct difference arises from the variations in size, symmetry, and charge distributions between these two dianions. Finally, the present finding again confirms the structural diversity of hydrogen-bonding networks in microhydrated closo-boranes and enrich our understanding of aqueous borate chemistry.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2025

Bayesian prior construction for uncertainty quantification in first-principles statistical mechanics

First-principles statistical mechanics enables the prediction of thermodynamic and kinetic properties of materials, but is computationally expensive. Many approaches require surrogate models to calculate energies within Monte Carlo or molecular dynamics simulations. Inexpensive surrogates such as cluster expansions enable otherwise intractable calculations by interpolating data from higher accuracy methods, such as Density Functional Theory (DFT). Surrogate models introduce uncertainty into downstream calculations, in addition to any uncertainty inherent to DFT calculations. Bayesian frameworks address this by quantifying uncertainty and incorporating expert knowledge through priors. However, constructing effective priors remains challenging. This work introduces and describes practical strategies for building Bayesian cluster expansions, focusing on basis truncation, hyperparameter selection, and ground state replication. We analyze multiple basis truncation schemes, compare cross-validation to the evidence-approximation for hyperparameter optimization, and provide methods to find and enforce ground-state-preserving models through priors. Additionally, we compare the uncertainties between different approximations to DFT (LDA, PBE, SCAN) against the uncertainty introduced with the use of cluster expansion surrogate models. These approaches are demonstrated on the BCC Li x Mg 1-x and Li x Al 1-x alloys, which are both of interest for solid-state Li batteries. Our results provide guidelines for constructing and utilizing Bayesian cluster expansions, thereby improving the transparency of materials modeling. Furthermore, the approaches and insights developed in this work can be transferred to a wide range of cluster expansion surrogate models, including the atomic cluster expansion and related machine-learned interatomic potential architectures.

Alloy theory↗
DOE OSTI2024

CMB lensing and Ly⁢ α forest cross bispectrum from DESI’s first-year quasar sample

The squeezed cross-bispectrum B κ,Ly α between the gravitational lensing in the cosmic microwave background and the 1D Ly α forest power spectrum can constrain bias parameters and break degeneracies between σ8 and other cosmological parameters. We detect B κ,Ly ⁢α with 4.8⁢σ significance at an effective redshift z eff =2.4 using Planck PR3 lensing map and over 280,000 quasar spectra from the Dark Energy Spectroscopic Instrument’s first-year data. We test our measurement against metal contamination and foregrounds such as Galactic extinction and clusters of galaxies by deprojecting the thermal Sunyaev-Zeldovich effect. Finally, we compare our results to a tree-level perturbation theory calculation and find reasonable agreement between the model and measurement.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Forecasting cosmological constraints from the weak lensing magnification of type Ia supernovae measured by the Nancy Grace Roman Space Telescope

We report that the weak lensing magnification of type Ia supernovae (SNe Ia) is sensitive to the clustering of matter and provides an independent cosmological probe complementary to SN Ia distance measurements. The Nancy Grace Roman Space Telescope is uniquely sensitive to this measurement as it can discover high redshift SNe Ia and measure them with high precision. We present a methodology for reconstructing the probability distribution of the weak lensing magnification μ of SNe Ia, p(μ), from observational data, and using it to constrain cosmological parameters. We find that the reconstructed p(μ) can be fitted accurately by a stretched Gaussian distribution and used to measure the variance of μ, ξ μ , which can be compared to theoretical predictions in a likelihood analysis. Applying our methodology to a set of realistically simulated SNe Ia expected from the Roman Space Telescope, we find that using the weak lensing magnification of the SNe Ia constrains a combination of matter density Ω m and matter clustering amplitude σ 8 . SN Ia distances alone lead to a better than 1% measurement of Ωm. The combination of SN Ia weak lensing magnification and distance measurements result in a ~10 % measurement on σ 8 . The SNe Ia from Roman will be powerful in constraining the cosmological model.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2022

A Decentralized Approach for Modeling Organized Convection Based on Thermal Populations on Microgrids

Abstract In this study, a spectral model for convective transport is coupled to a thermal population model on a two‐dimensional horizontal “microgrid,” covering the typical gridbox size of general circulation models. The goal is to explore new ways of representing impacts of spatial organization in cumulus cloud fields. The thermals are considered the smallest building block of convection, with thermal life cycle and movement represented through binomial functions. Thermals interact through two simple rules, reflecting pulsating growth and environmental deformation. Long‐lived thermal clusters thus form on the microgrid, exhibiting scale growth and spacing that represent simple forms of spatial organization and memory. Size distributions of cluster number are diagnosed from the microgrid through an online clustering algorithm, and provided as input to a spectral multiplume eddy‐diffusivity mass flux scheme. This yields a decentralized transport system, in that the thermal clusters acting as independent but interacting nodes that carry information about spatial structure. The main objectives of this study are (a) to seek proof of concept of this approach, and (b) to gain insight into impacts of spatial organization on convective transport. Single‐column model experiments demonstrate satisfactory skill in reproducing two observed cases of continental shallow convection. Metrics expressing self‐organization and spatial organization match well with large‐eddy simulation results. We find that in this coupled system, spatial organization impacts convective transport primarily through the scale break in the size distribution of cluster number. The rooting of saturated plumes in the subcloud mixed layer plays a key role in this process.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

The Galaxy–Halo Connection of DESI Luminous Red Galaxies with Subhalo Abundance Matching

Abstract We use subhalo abundance and age distribution matching to create magnitude-limited mock galaxy catalogs at z ∼ 0.43, 0.52, and 0.63 with z -band and 3.4 μ m W 1-band absolute magnitudes and r − z and r − W 1 colors. From these magnitude-limited mocks, we select mock luminous red galaxy (LRG) samples according to the ( r − z )-based (optical) and ( r − W 1)-based (infrared) selection criteria for the LRG sample of the Dark Energy Spectroscopic Instrument (DESI) survey. Our models reproduce the number densities, luminosity functions, color distributions, and projected clustering of the DESI Legacy Surveys that are the basis for DESI LRG target selection. We predict the halo occupation statistics of both optical and IR DESI LRGs at fixed cosmology and assess the differences between the two LRG samples. We find that IR-based SHAM modeling represents the differences between the optical and IR LRG populations better than using the z band and that age distribution matching overpredicts the clustering of LRGs, implying that galaxy color is uncorrelated with halo age in the LRG regime. Both the optical and IR DESI LRG target selections exclude some of the most luminous galaxies that would appear to be LRGs based on their position on the red sequence in optical color–magnitude space. Both selections also yield populations with a nontrivial LRG–halo connection that does not reach unity for the most massive halos. We find that the IR selection achieves greater completeness (≳90%) than the optical selection across all redshift bins studied.

Berti, Angela M. (ORCID:0000000335826649)↗
NASA NTRS1988

A new convergent point and distance modulus for the Hyades from radial velocities

The dynamics of the Hyades open star cluster is investigated analytically on the basis of the photoelectric radial velocities reported by Griffin et al. (1988). The methods used to determine the radial-velocity gradient, convergent point, and distance modulus are described, and the results are presented in tables and graphs and characterized in detail. Findings reported include convergent-point alpha = 98.2 + or - 1.1 deg and delta = 6.1 + or - 1.0 deg, space motion 48.0 + or - 0.27 km/s, distance to cluster center 45.4 + or - 2.1 pc, distance modulus 3.28 + or - 0.10, and cluster velocity dispersion 230 m/s.

Gunn, James E.↗
DOE OSTI2021

Homotypic aggregates contribute to heterogeneity in B cell fates due to an intrinsic gradient of stimulant exposure

Highlights: • CD40-signaled B cells in cultures form three-dimensional homotypic aggregates. • These tight aggregates hinder the free diffusion of large molecule stimulants. • The resulting concentration gradient of stimulants leads to heterogeneous cell fates. • We describe a flow cytometric approach to quantify this positional information. Monocultures of several cell types result in the formation of robust clusters called homotypic aggregates (HAs). How this physical aggregation affects cell fates in immune cell cultures, is poorly understood. We studied anti-CD40-stimulated primary B cell cultures, where cells assembled into large three-dimensional LFA1-driven HAs by 72 h. The dense packing in these aggregates restricts the infiltration of stimulants, such as antibodies, to cells inside the clusters. This creates a concentration gradient of stimulant availability across the cross-section of HAs. We describe a method to retain this positional information even after the disruption of HAs, for analysis by flow cytometry. Comparison of stage-specific cell-surface markers showed that the extent of stimulant-binding affected multiple fates non-uniformly. While germinal center and lineage markers were moderately upregulated, immunoglobulins and markers associated with memory were more than doubled in the peripheral cells binding more anti-CD40. These cells also experienced a strong repression of the plasma cell regulator Prdm1 and an upregulation of the oncogene Myc. Thus, cells at different locations in HAs are subjected to unequal doses of stimulants, leading to a hitherto unreported source of heterogeneity in cell fates. These findings can be extrapolated to understand the dose-dependent effects of stimulants in other three-dimensional cell clusters.

60 APPLIED LIFE SCIENCES↗