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At least 919 records · Page 51
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Declining carbohydrate content of Sitka-spruce treesdying from seawater exposure

Abstract Increasing sea levels associated with climate change threaten the survival of coastal forests, yet the mechanisms by which seawater exposure causes tree death remain poorly understood. Despite the potentially crucial role of nonstructural carbohydrate (NSC) reserves in tree survival, their dynamics in the process of death under seawater exposure are unknown. Here we monitored progressive tree mortality and associated NSC storage in Sitka-spruce (Picea sitchensis) trees dying under ecosystem-scale increases in seawater exposure in western Washington, USA. All trees exposed to seawater, because of monthly tidal intrusion, experienced declining crown foliage during the sampling period, and individuals with a lower percentage of live foliated crown (PLFC) died faster. Tree PLFC was strongly correlated with subsurface salinity and needle ion contents. Total NSC concentrations in trees declined remarkably with crown decline, and reached extremely low levels at tree death (2.4% and 1.6% in leaves and branches, respectively, and 0.4% in stems and roots). Starch in all tissues was almost completely consumed, while sugars remained at a homeostatic level in foliage. The decreasing NSC with closer proximity to death and near zero starch at death are evidences that carbon starvation occurred during Sitka-spruce mortality during seawater exposure. Our results highlight the importance of carbon storage as an indicator of tree mortality risks under seawater exposure.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Seawater exposure causes hydraulic damage in dying Sitka-spruce trees

Sea-level rise is one of the most critical challenges facing coastal ecosystems under climate change. Observations of elevated tree mortality in global coastal forests are increasing, but the mechanism of salinity-stress induced tree mortality is currently unknown. We monitored progressive mortality and associated gas exchange and hydraulic shifts in Sitka-spruce (Picea sitchensis) trees located within a salinity gradient under an ecosystem-scale change of seawater exposure in Washington State, USA. Percentage of live foliated crown (PLFC) decreased and tree mortality increased with increasing soil salinity during the study period. A strong reduction in gas exchange and xylem hydraulic conductivity (Ks) occurred during tree death, with an increase of the percentage loss of xylem conductivity (PLC) and turgor loss point (ptlp). Hydraulic and osmotic shifts reflected that hydraulic function declined from seawater exposure and dying trees were unable to support osmotic adjustment. Constrained gas exchange was strongly related to hydraulic damage at both stem and leaf levels. Significant correlations between foliar sodium (Na+) concentration and gas exchange and key hydraulic parameters (Ks, PLC and ptlp ) suggest that cellular injury related to the toxic effects of ion accumulation impacted the physiology of these dying trees. This study provides evidence of toxic effects on cellular function that become manifest in all aspects of plant functioning, leading to unfavourable osmotic and hydraulic conditions.

Zhang, Hongxia↗
DOE OSTI2025

Genomic insights into local adaptation and migration success in reintroduced Coho Salmon of the Wenatchee River basin

ABSTRACT Objective Reintroduction of salmonids into regions where they have been extirpated is a common conservation strategy that is often implemented through natural recolonization, translocation of natural populations, or hatchery-based programs. Locally adapting to specific environmental conditions is critical for long-term population viability, particularly for species like Coho Salmon Oncorhynchus kisutch, which face diverse selective pressures during their migration. This study focused on the mid-Columbia River Coho Salmon reintroduction program managed by Yakama Nation Fisheries, which has successfully reintroduced Coho Salmon into the Wenatchee and Methow River basins, Washington. Notably, these populations have adapted to the longer migration route than those in the founding stock, with selection favoring individuals with an earlier arrival time and that can navigate a 15-km, high-gradient canyon to reach optimal spawning grounds. The objectives of this study were to investigate whether specific genomic regions are under selection for traits associated with return location and timing in Coho Salmon. Methods Low-coverage whole-genome resequencing data were used to screen for genomic regions associated with the phenotypes of interest. Results A weak polygenic signal in female Coho Salmon was found to be associated with return group, with a subset of candidate adaptive regions occurring across eight chromosomes. Conclusions These findings provide insights into the genomic mechanisms underlying local adaptation in reintroduced salmon populations and inform broodstock selection strategies aimed at promoting natural production and long-term population sustainability.

Horn, Rebekah L.↗
DOE OSTI2020

Regional Differences in the Structure of Juglans nigra Phytobiome Reflect Geographical Differences in Thousand Cankers Disease Severity

Thousand cankers disease threatens Juglans nigra (Eastern Black Walnut) in urban and natural landscapes. Incidence and severity of thousand cankers disease is higher in the host’s introduced range in the western United States. We hypothesized that these differences are driven partly by geographical variation in the host phytobiome due to its roles in host stress tolerance, nutrient acquisition, and defense. To evaluate the role of the phytobiome in mediating thousand cankers disease, we characterized the J. nigra phytobiome of diseased and healthy trees in portions of its native (Indiana and Tennessee) and introduced (Washington) ranges. Grafted clones present in each state and open-pollinated populations were sampled. DNA was extracted from soil and branch (caulosphere) tissues and internal transcribed spacer and 16s regions were sequenced for characterization of fungal and bacterial communities. We found that microbial communities in the caulosphere and soil differ between native and introduced ranges of J. nigra and harbor different mutualistic and pathogenic microorganisms. Additionally, caulosphere microbial communities were more species rich and diverse in the native range of J. nigra, suggesting greater levels of functional redundancy and multifunctionality in the native-range phytobiome compared with the introduced range. We also found higher network complexity in the caulosphere of trees in the introduced range and evidence for two alternative stable community states associated with diseased and healthy trees. Our results provide support for the hypothesis that geographical variation in thousand cankers disease incidence and severity is partially driven by differences in the phytobiome of J. nigra in its introduced and native ranges.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

Comparative Genomics and Functional Analysis of Carbohydrate Utilization Networks in Unicyanobacterial Consortia Derived from Hypersaline Lake Microbial Mats

Hot Lake is a meromictic, hypersaline lake located in Washington state, USA. It harbors a phototrophic microbial mat community stable in dramatic seasonal environmental changes. The complexity of natural community hinders to analyze metabolic interactions between its members. To manage this obstacle, unicyanobacterial consortia (UCC) were sampled from the community and sequenced. UCC is a microbial community in which one cyanobacterium serves as the sole primary producer of carbon sources to several heterotrophic bacteria. Recently available metagenomes for two UCC revealed a shared set of 19 microbial operational taxonomic units (OTU), whose individual genomes were reconstructed by co‐assembly and abundance profile binning. We used this genomic data and a comparative genomics approach to infer carbohydrate utilization pathways and their transcription regulation. We scanned all UCC proteomes against the KEGG Orthology, Pfam, GO and SEED databases to reveal genes potentially involved in sugar utilization. Then we analyzed the genomic and functional contexts of gene loci encoding the obtained proteins and reconstructed the respective metabolic pathways and transcriptional regulons. As result, we observed catabolic pathways for 32 various carbohydrates and their derivatives. Distribution of the inferred catabolic pathways has highly mosaic structure across the UCC genomes. The largest number of pathways was observed in two representatives of the Halomonas genus (14–15 pathways) and one Rhodobacteriaceae sp. (15 pathways). In other UCC genomes, we found up to 10 carbohydrate utilization pathways per genome. However in 7 genomes we didn't observe any pathway. The most widely distributed pathways in UCC were the alpha‐glucosides and the DeLey‐Doudoroff galactose utilization pathways. Both were found in 7 genomes. Majority of pathways are distributed among 1–3 genomes. The reconstructed catabolic pathways were partially validated by phenotypic analyses of UCC community members that were isolated in a pure culture. In the Rhodobacteriaceae sp., we found a novel catabolic pathway that was proposed to be involved in mannoheptulose utilization. To our knowledge, the proposed mannoheptulose catabolic pathway is the first case of a pathway for heptose utilization and will require further experimental validation. The identified pathways are potentially regulated by local transcription factors (TFs) that are often co‐localized with the respective sugar catabolic gene loci. For 63 out of the 80 identified TFs we identified their cognate DNA binding motifs and reconstructed regulons using the bioinformatics approach. Support or Funding Information This research was supported by the Genomic Science Program (GSP), Office of Biological and Environmental Research (OBER), and U.S. Department of Energy (DOE) and is a contribution of the Pacific Northwest National Laboratory (PNNL) Foundational Scientific Focus Area.

Leyn, Semen A.↗
DOE OSTI2016

Multi‐omics of the Soil Microbiome

TheArctic is characterized by vast amounts of carbon stored in permafrost and isan important focal point for the study of climate change as increasing temperature may accelerate microbially‐mediated release of carbon stored inpermafrost into the atmosphere as CO 2 and CH 4 . Yet surprisingly, very little is known about the vulnerability of permafrost andresponse of microorganisms in the permafrost to their changing environment. To address these knowledge gaps we used omics technologiesto explore permafrost microbial communities, to reveal hitherto unknown soilmicrobial populations and to link them to specific soil biogeochemical processes. For these projects we employed an omics pipeline that includes metagenomics, metatranscriptomics and metaproteomics to determine the phylogenetic and functional gene compositions and their expression in complex, non‐sterile soil samples collected from the field at several locations in Alaska. These studies have presented several challenges due to the unprecedented large size of the datasets and the insufficiency of available bioinformatic tools & databases to analyze, correlate and integrate thedata. To address these challenges we developed a novel functional gene databaseand used different assembly and analysis algorithms to determine key featuresin the datasets. The data reveal the microbial diversity, composition andfunctional potential in permafrost and how the microbial communities respond toclimate change impacts. Support or Funding Information Microbiomes in Transition, LDRD, Pacific Northwest National Laboratories, Richland, Washington

Jansson, Janet K.↗
DOE OSTI2018

Salinivirga fredricksonii gen. nov., sp. nov., a heterotrophic halophile isolated from a photosynthetic mat, a member of a novel lineage (Salinarimonadaceae fam. nov.) within the order Rhizobiales, and reclassification of the genus Salinarimonas Liu et al. 2010 into Salinarimonadaceae

A halophilic bacterial strain, HL-109T, was isolated from the unicyanobacterial consortium UCC-O, which was obtained from the photosynthetic mat of Hot Lake (Washington, USA). A polyphasic approach using phenotypic, genotypic, and chemotaxonomic data was used to classify the strain within the order “Rhizobiales”. The organism stains Gram negative and is a moderate thermophile with an optimum of 45 °C. It is an obligate aerobe, heterotrophic, and a halophile that grows in both NaCl and MgSO4 brines. The novel isolate has a polymorphic cellular morphology of short rods with occasional branching and cells were monotrichous. The major fatty acids detected were C18:1, C18:0, C16:0, and C18:cyc. Phylogenetic analysis of the 16S rRNA gene placed the strain in the order “Rhizobiales” and it shares 94% identity to its nearest relative, Salinarimonas ramus. Morphological, chemotaxonomic, and phylogenetic results did not affiliate the novel organism with any of the families in the “Rhizobiales”; therefore, HL-109T is representative of a new lineage, which we propose to be Salinivirga fredricksonii gen. nov, sp. nov., Salinivirgaceae fam. nov., with the type strain of Salinivirga fredricksonii gen. nov. sp. nov. as HL-109T (JCM TBDT and DSMZ TBDT). In addition, examination of the phylogenetics of the strain HL-109T and its nearest relatives, Salinarimonas ramus and S. rosea, demonstrate that these halophiles form a clade distinct from the families of the “Rhizobiales”. We thus recommend transferring the genus Salinarimonas to join the novel family Salinivirgaceae.

Cole, Jessica K.↗
DOE OSTI2017

Antineutrino Monitoring of Spent Nuclear Fuel

Military and civilian applications of nuclear energy have left a significant amount of spent nuclear fuel over the past 70 years. Currently, in many countries worldwide, the use of nuclear energy is on the rise. Therefore, the management of highly radioactive nuclear waste is a pressing issue. In this work, we explore antineutrino detectors as a tool for monitoring and safeguarding nuclear-waste material. We compute the flux and spectrum of antineutrinos emitted by spent nuclear fuel elements as a function of time, and we illustrate the usefulness of antineutrino detectors in several benchmark scenarios. In particular, we demonstrate how a measurement of the antineutrino flux can help to reverify the contents of a dry storage cask in case the monitoring chain by conventional means gets disrupted. We then comment on the usefulness of antineutrino detectors at long-term storage facilities such as Yucca mountain. Finally, we put forward antineutrino detection as a tool in locating underground “hot spots” in contaminated areas such as the Hanford site in Washington state.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2024

Low frequency, 100–600 MHz, searches with axion cavity haloscopes

We investigate reentrant and dielectric loaded cavities for the purpose of extending the range of axion cavity haloscopes to lower masses, below the range where the Axion Dark Matter experiment (ADMX) has already searched. Reentrant and dielectric loaded cavities were simulated numerically to calculate and optimize their form factors and quality factors. A prototype reentrant cavity was built and its measured properties were compared with the simulations. We estimate the sensitivity of axion dark matter searches using reentrant and dielectric loaded cavities inserted in the existing ADMX magnet at the University of Washington and a large magnet being installed at Fermilab. Published by the American Physical Society 2024

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2022

Analysis of Energy Justice and Equity Impacts from Replacing Peaker Plants with Energy Storage

Transitions to low-carbon energy systems are essential to mitigating and adapting to climate change. Energy storage systems are a key component in achieving a viable decarbonized electric grid. However, decarbonization alone does not guarantee a fairer, more inclusive, or socially just energy system. Energy equity and justice should be integrated in energy system transitions to ensure benefits and burdens are shared equitably. In this paper, we discuss the relationship between energy storage and social equity by assessing the use of energy storage to replace natural gas-fired (NG) peaker plants. Peaker plants are disproportionately located near disadvantaged communities and tend to be older and high emitters of health-affecting fine particulate matter and other pollutants. This paper investigates the equity implications of NG peaker plant replacements with battery energy storage in the context of Washington State’s peaker plants to highlight the human-centered values of retiring the plants. The study performed production cost simulations using the latest Western Electric Coordinating Council Anchor Dataset 2030 case and found that total generation cost, locational marginal price, and total annual emissions were reduced with the replacements. These reductions will have equity benefits on local communities including access to clean air, enhanced health outcomes, and energy burden reductions.

Tarekegne, Bethel W.↗
DOE OSTI2023

Frequency Resilience Enhancement for Power Systems with High Penetration of Grid-Forming Inverters

Abstract—Grid following inverter-based renewable generation has replaced conventional generation in recent years, resulting in lower system inertia. The frequency resilience in such a lower inertia system is critical for emergency mitigation. In this paper, we propose a resilience metric based on frequency recovery to quantitatively represent system resilience in terms of the rate of change of frequency. Application of grid-forming converters provides a means to improve system resilience by providing virtual inertia. An under-frequency load shedding strategy is applied to further support frequency recovery in cases with high penetration of grid-forming inverters. Case studies are designed and performed in a modified IEEE 9-bus test system using the PSCAD/EMTDC platform. Simulation results demonstrate the validity of the proposed resilience metric and the effectiveness of the strategy for reducing frequency excursion in inverter-based power systems. citation: J. Gui, H. Lei, T. R. McJunkin and B. K. Johnson, "Frequency Resilience Enhancement for Power Systems with High Penetration of Grid-Forming Inverters," 2023 IEEE Power & Energy Society Innovative Smart Grid Technologies Conference (ISGT), Washington, DC, USA, 2023, pp. 1-5, doi: 10.1109/ISGT51731.2023.10066357.

14 SOLAR ENERGY↗
DOE OSTI2022

Optimal, centralized dynamic curbside parking space zoning

In this paper we formulate a dynamic mixed integer program for optimally zoning curbside parking spaces subject to transportation policy-inspired constraints and regularization terms. First, we illustrate how given some objective of curb zoning valuation as a function of zone type (paid parking, bus stop, etc.), dynamically rezoning involves unrolling this optimization program over a fixed time horizon. Second, we implement two different solution methods given an example curb zoning valuation. In the first method, we solve long horizon dynamic zoning problems via approximate dynamic programming. In the second method, we employ Dantzig-Wolfe decomposition to break-up the mixed-integer program into a master problem and several sub-problems that can be solved in parallel. This speeds up the computational solve-time of the MIP considerably. We present simulation results and comparisons of the different employed techniques on vehicle arrival-rate data obtained for a neighborhood in downtown Seattle, Washington, USA.

Nazir, Mohammad Nawaf↗
DOE OSTI2025

Spokane Eco-District Campus Performance Under Alternative Electricity Rates: Benefits for virtual power plant participants and suppliers

Here, the respective benefits for virtual power plant participants and suppliers are revealed and compared under alternative electricity rate structures, including conventional large commercial electricity rates, large commercial electricity rates with special rates for demand-side generation, and dynamic hourly transactive prices. These three scenarios were explored using the capabilities of the Eco-District campus, a virtual power plant in Spokane, Washington, that is supplied electricity by Avista Utilities. The Eco-District Campus was modeled to host solar power generation, battery energy storage, and thermal energy resources that must be coordinated with building heating and cooling needs. First, the electricity supplier’s costs for energy, infrastructure, and energy losses were modeled. Then, the virtual power plant’s performance was modeled while presuming that its manager would minimize its costs under its electricity rate structure. The demand charges of conventional commercial electricity rates managed monthly peak, as would be expected, but hourly dynamic transactive pricing resulted in a striking alignment between the costs incurred by the supplier and the virtual power plant’s energy costs.

Electricity rates↗
DOE OSTI2020

Implementing Online Oscillation Monitoring and Forced Oscillation Source Locating at Peak Reliability

This paper introduces a framework of online oscillation monitoring systems and forced oscillation detection & source location tools that Peak Reliability ('PEAK') has implemented for the Reliability Coordinator (RC) function of the Western Interconnection. The framework consists of four main components: (1) Montana Tech's Modal Analysis Software (MAS) engine; (2) Washington State University's Oscillation Monitor System (OMS) software; (3) Forced Oscillation Detection and Source Location Algorithms (FODSL); and (4) PEAK in-house visualization tool and alarming logic built in PI Processbook. The framework has been validated and applied for real system oscillation studies successfully. Implementation experience and lessons learned will be discussed in the paper.

14 SOLAR ENERGY↗
DOE OSTI2024

On the Use of Tidal Power for Enhancing Power System Resilience with Networked Microgrids

The resilience of a power system to withstand a high-impact low-frequency event is a growing concern, especially in coastal communities that tend to be densely populated and very prone to extreme events such as storms and flooding. In such areas, marine renewable energy can be integrated with the existing renewable energy sources to improve generation diversity and power system resiliency. Using networked microgrids as an example, this paper proposes an empirical study to investigate the impact of marine resources, in particular, tidal energy on the power system resiliency. A set of quantitative metrics with intuitive physical interpretations is used to evaluate the resiliency of a power system that is enhanced with distributed generation in the form of rooftop photovoltaic systems and tidal generators. The effectiveness of resource diversification on the power system resiliency is demonstrated through simulations on a model of a real-world coastal distribution feeder located in Sequim, Washington.

Peerzada, Aaqib A.↗
DOE OSTI2023

Reliable Devices Yield Stable Quantum Computations

Stable quantum computation requires noisy results to remain bounded even in the presence of noise fluctuations. Yet non-stationary noise processes lead to drift in the varying characteristics of a quantum device that can greatly influence the circuit outcomes. Here we address how temporal and spatial variations in noise relate device reliability to quantum computing stability. First, our approach quantifies the differences in statistical distributions of characterization metrics collected at different times and locations using Hellinger distance. We then validate an analytical bound that relates this distance directly to the stability of a computed expectation value. Our demonstration uses numerical simulations with models informed by the washington superconducting transmon device. We find that the stability metric is consistently bounded from above by the corresponding Hellinger distance, which can be cast as a specified tolerance level. These results underscore the significance of reliable quantum computing devices and the impact for stable quantum computation.

Dasgupta, Samudra↗
DOE OSTI2023

Algebraic Compression of Free Fermionic Quantum Circuits: Particle Creation, Arbitrary Lattices and Controlled Evolution

In this work [1], we extend our recently introduced algebraic circuit compression algorithms [2], [3] that can compress time evolution circuits of free fermionic Hamiltonians on an n-site 1D chain, equation H(t)=∑i=1n-1 (hi(t)cici+1+pi(t)cici+1)+h.c., 1 equation in three significant ways: (1) we allow for compression of free fermionic Hamiltonians on arbitrary lattices, (2) we incorporate particle creation/annihilation operators into the compression schemes, and (3) we extend the compression scheme to controlled time-evolution operators. We illustrate the effectiveness of our approach by simulating the dynamics of a fermion on a 4× 4 2D square lattice on ibmq_washington, both in the presence and absence of disorder. Our quantum simulations show a remarkably high fidelity which is enabled through the compressed circuits.

Kökcü, Efekan↗