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At least 919 records · Page 51

E-cadherin junction formation involves an active kinetic nucleation process

Epithelial (E)-cadherin-mediated cell–cell junctions play important roles in the development and maintenance of tissue structure in multicellular organisms. E-cadherin adhesion is thus a key element of the cellular microenvironment that provides both mechanical and biochemical signaling inputs. Here, we report in vitro reconstitution of junction-like structures between native E-cadherin in living cells and the extracellular domain of E-cadherin in a supported membrane. Junction formation in this hybrid live cell-supported membrane configuration requires both active processes within the living cell and a supported membrane with low E-cad-ECD mobility. The hybrid junctions recruit α-catenin and exhibit remodeled cortical actin. Observations suggest that the initial stages of junction formation in this hybrid system depend on the trans but not the cis interactions between E-cadherin molecules, and proceed via a nucleation process in which protrusion and retraction of filopodia play a key role.

59 BASIC BIOLOGICAL SCIENCES↗

Sea spray aerosol as a unique source of ice nucleating particles

Ice nucleating particles (INPs) are vital for ice initiation in, and precipitation from, mixed-phase clouds. A source of INPs from oceans within sea spray aerosol (SSA) emissions has been suggested in previous studies but remained unconfirmed. Here, we show that INPs are emitted using real wave breaking in a laboratory flume to produce SSA. The number concentrations of INPs from laboratory-generated SSA, when normalized to typical total aerosol number concentrations in the marine boundary layer, agree well with measurements from diverse regions over the oceans. Data in the present study are also in accord with previously published INP measurements made over remote ocean regions. INP number concentrations active within liquid water droplets increase exponentially in number with a decrease in temperature below 0 °C, averaging an order of magnitude increase per 5 °C interval. The plausibility of a strong increase in SSA INP emissions in association with phytoplankton blooms is also shown in laboratory simulations. Nevertheless, INP number concentrations, or active site densities approximated using “dry” geometric SSA surface areas, are a few orders of magnitude lower than corresponding concentrations or site densities in the surface boundary layer over continental regions. These findings have important implications for cloud radiative forcing and precipitation within low-level and midlevel marine clouds unaffected by continental INP sources, such as may occur over the Southern Ocean.

54 ENVIRONMENTAL SCIENCES↗

Homochiral and racemic MicroED structures of a peptide repeat from the ice-nucleation protein InaZ

The ice-nucleation protein InaZ from Pseudomonas syringae contains a large number of degenerate repeats that span more than a quarter of its sequence and include the segment GSTSTA. Ab initio structures of this repeat segment, resolved to 1.1 Å by microfocus X-ray crystallography and to 0.9 Å by the cryo-EM method MicroED, were determined from both racemic and homochiral crystals. The benefits of racemic protein crystals for structure determination by MicroED were evaluated and it was confirmed that the phase restriction introduced by crystal centrosymmetry increases the number of successful trials during the ab initio phasing of the electron diffraction data. Both homochiral and racemic GSTSTA form amyloid-like protofibrils with labile, corrugated antiparallel β-sheets that mate face to back. The racemic GSTSTA protofibril represents a new class of amyloid assembly in which all-left-handed sheets mate with their all-right-handed counterparts. This determination of racemic amyloid assemblies by MicroED reveals complex amyloid architectures and illustrates the racemic advantage in macromolecular crystallography, now with submicrometre-sized crystals.

59 BASIC BIOLOGICAL SCIENCES↗

Identifying the microstructural features associated with void nucleation during elevated–temperature deformation of copper

The microstructural-scale mechanisms that produce cracks in metals during deformation at elevated temperatures are relevant to applications that involve thermal exposure. Prior studies of cavitation during high-temperature deformation, for example, creep, suffered from an inability to directly observe the microstructural evolution that occurs during deformation and leads to void nucleation. Here the current study takes advantage of modern high-speed electron backscatter diffraction (EBSD) detectors to observe cavitation in oxygen-free, high-conductivity copper in situ during deformation at 300°C. Most voids formed at the triple junction between a twin boundary and a high-angle grain boundary (HAGB). This finding does not contradict previous studies that suggested that twins are resistant to cracking—it reveals that cracks in HAGBs originate at twin/HAGB triple junctions and that cracks preferentially grow along HAGBs rather than the accompanying twins. Atomistic simulations explored the origins of this observation and suggest that twin/HAGB triple junctions are microstructural weak points.

36 MATERIALS SCIENCE↗

Thermally activated nucleation and growth of cobalt and nickel oxide nanoparticles on porous silica

Integrating mesoscale to the molecular level understanding of nanoparticle nucleation phenomena can drive the bottom-up synthesis approach for target applications. In this work, we studied the thermal evolution of cobalt and nickel oxide nanoparticle structural phases on porous silica host from over wide spatial scale using multi-modal analysis involving scanning transmission electron microscope (STEM), X-ray absorption (XANES) and nuclear magnetic resonance (NMR) spectroscopies along with density functional theory (DFT) based calculations. The TEM analysis reveals thermally activated nanoparticle clustering and subsequent interaction with the porous host material. The Co and Ni K-edge XANES spectra revealed the evolution from metal hydroxide to metal oxide and subsequently metal silicate composites with calcinination temperature. 29 Si NMR analysis revealed the role of surface functional groups of silica host for silicate composite formation which is corroborated by DFT studies.

36 MATERIALS SCIENCE↗

Heteroepitaxy of GaP Nucleation Layers on Si by Molecular Beam Epitaxy

The growth of single crystalline GaP nucleation and buffer layers on Si substrates by molecular-beam epitaxy is demonstrated. The use of two different regimes of migration-enhanced epitaxy was studied. It was found that p–n junctions can be created due to the interdiffusion during the growth of GaP layer on p-type Si substrate.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Pathways for Nucleation and Growth in Confined Spaces and at Interfaces

Mineral crystallization is central to myriad natural processes from the formation of snowflakes to stalagmites, but the molecular-scale mechanisms are often far more complex than models reflect. Feedbacks between the hydro-, bio-, and geo-spheres drive complex crystallization processes that challenge our ability to observe and quantify them, motivating an expansion of crystallization theories. Here, in this article, we discuss how the driving forces and timescales of nucleation are influenced by factors ranging from simple geometric confinement to distinct interfacial solution structures involving solvent organization, electrical double layers, and surface charging effects. Taken together, these ubiquitous natural phenomena can preserve metastable intermediates, drive precipitation of undersaturated phases, and modulate crystallization in time and space.

biosphere↗

Uranium Hydride Nucleation and Growth Model FY'16 ESC Annual Report

Uranium hydride corrosion is of great interest to the nuclear industry. Uranium reacts with water and/or hydrogen to form uranium hydride which adversely affects material performance. Hydride nucleation is influenced by thermal history, mechanical defects, oxide thickness, and chemical defects. Information has been gathered from past hydride experiments to formulate a uranium hydride model to be used in a Canned Subassembly (CSA) lifetime prediction model. This multi-scale computer modeling effort started in FY’13, and the fourth generation model is now complete. Additional high-resolution experiments will be run to further test the model.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Reference Computational Meshing Strategy for Computational Fluid Dynamics Simulation of Departure from Nucleate Boiling

The objective of this effort is to establish a strategy and process for generation of suitable computational mesh for computational fluid dynamics simulations of departure from nucleate boiling in a 5 by 5 fuel rod assembly held in place by PWR mixing vane spacer grids. This mesh generation process will support ongoing efforts to develop, demonstrate and validate advanced multi-phase computational fluid dynamics methods that enable more robust identification of dryout conditions and DNB occurrence.Building upon prior efforts and experience, multiple computational meshes were developed using the native mesh generation capabilities of the commercial CFD code STAR-CCM+. These meshes were used to simulate two test cases from the Westinghouse 5 by 5 rod bundle facility. The sensitivity of predicted quantities of interest to the mesh resolution was then established using two evaluation methods, the Grid Convergence Index method and the Least Squares method. This evaluation suggests that the Least Squares method can reliably establish the uncertainty associated with local parameters such as vector velocity components at a point in the domain or surface averaged quantities such as outlet velocity magnitude. However, neither method is suitable for characterization of uncertainty in global extrema such as peak fuel surface temperature, primarily because such parameters are not necessarily associated with a fixed point in space. This shortcoming is significant because the current generation algorithm for identification of DNB event conditions relies on identification of such global extrema. Ongoing efforts to identify DNB based on local surface conditions will address this challenge.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE Early Career Project Annual Report: Disentangling the factors controlling the emission of bioparticles that act as ice nucleating particles

This report describes the accomplishments, progress, and obstacles encountered during the first project year of the U.S. Department of Energy Biological and Environmental Research program Early Career project, “Disentangling the factors controlling the emission of bioparticles that act as ice nucleating particles.”

54 ENVIRONMENTAL SCIENCES↗

Use of Nucleating Agent NA11 in the Preparation of Polyvinylidene Fluoride Dual-Layer Hollow Fiber Membranes

Polyvinylidene fluoride (PVDF) dual-layer hollow fiber membranes were simultaneously fabricated by thermally induced phase separation (TIPS) and non-solvent induced phase separation (NIPS) methods using a triple orifice spinneret (TOS) for water treatment application. The support layer was prepared from a TIPS dope solution, which was composed of PVDF, gamma-butyrolactone (GBL), and N-methyl-2-pyrrolidone (NMP). The coating layer was prepared from a NIPS dope solution, which was composed of PVDF, N,N-dimethylacetamide (DMAc), and polyvinylpyrrolidone (PVP). In order to improve the mechanical strength of the dual-layer hollow fiber, a nucleating agent, sodium 2,2'-methylene bis-(4,6-di-tert-butylphenyl) phosphate (NA11), was added to the TIPS dope solution. The performance of the membrane was evaluated by surface and cross-sectional morphology, water flux, mechanical strength, and thermal property. Our results demonstrate that NA11 improved the mechanical strength of the PVDF dual-layer hollow fiber membranes by up to 42%. In addition, the thickness of the coating layer affected the porosity of the membrane and mechanical performance to have high durability in enduring harsh processing conditions.

36 MATERIALS SCIENCE↗

Ice nucleating particle concentrations at Macquarie Island, 2017/8

These data list ice nucleating particle (INP) number concentrations active in the immersion freezing mode. Aerosol filters were collected during late March 2017 to March 2018 as part of the Macquarie Island Cloud and Radiation Experiment (MICRE), located at the Australian Antarctic Division's Macquarie Island station. Collections were made over alternating periods of 48 and 72 hours using open-faced polycarbonate filters that were approximately 4 m MSL, sited near the main AAD station on the island, at -54.4997 deg latitude and 158.9344 deg longitude. The volume of air filtered ranged from 5000 to 60000 volumetric liters per filter sample. Filters were stored and returned frozen to Colorado State University (CSU), where immersion freezing measurements over a range from 0 to -28 C were made using the CSU Ice Spectrometer (IS). Collected particles from each filter were resuspended in filtered, deionized water, and then dispensed into the IS and cooled to obtain cumulative INP temperature spectra. Aliquots of suspensions from selected samples were also heat treated (95 C for 20 min) to denature and deactivate biological INPs, and digested in 10% H2O2 at 95 C under UV-B for 20 min to remove all organic carbon INPs, prior to measurement using the IS.

54 ENVIRONMENTAL SCIENCES↗

MARCUS Ice Nucleating Particle Measurements (revised 7/2020)

These data list ice nucleating particle (INP) number concentrations active in the immersion freezing mode. Aerosol filters were collected during 4 voyages of the Aurora Australis vessel from 02 November 2017 to 22 March 2018, as part of the Measurements of Aerosols, Radiation and Clouds over the Southern Ocean (MARCUS) study. These voyages transected the Southern Ocean from Hobart, Tasmania to four Australian Antarctic Division stations, including three in Antarctica. Collections were made over alternating periods of 24 and 48 hours using open-faced polycarbonate filters that were approximately 18 m MSL, sited near the AOS trailer and other AMF measurements. The volume of air filtered ranged from 19000 to 38000 standard liters per filter sample. Filters were stored and returned frozen to Colorado State University (CSU), where immersion freezing measurements over a range from 0 to -28 degC were made using the CSU Ice Spectrometer (IS). Collected particles from each filter were resuspended in filtered, deionized water, and then dispensed into the IS and cooled to obtain cumulative INP temperature spectra. Aliquots of suspensions from selected samples were also heat treated (95 degC for 20 min) to denature and deactivate biological INPs, and digested in 10% H2O2 at 95 degC under UV-B for 20 min to remove all organic carbon INPs, prior to measurement using the IS.

54 ENVIRONMENTAL SCIENCES↗

COMBLE Ice Nucleating Particle Measurements

These data list ice nucleating particle (INP) number concentrations active in the immersion freezing mode per large volumes of air collected using filters, sampled atop the AOS trailer, part of AMF1, sited at Nordmela Harbor, Andøya Island, Norway, from 01 December 2019 to 26 May 2020, as part of the Cold-air Outbreaks in the Marine Boundary Layer Experiment (COMBLE). Collections were made over periods of 6 to 74 hours (average 34 h and 42 m3 filtered), with periods tailored to integrate cold-air outbreaks or flanking periods of non-cold-air outbreak air. We used open-faced polycarbonate filters that were sampled at a height of 4 m AGL on the AOS trailer (6 m below its inlet), 6-8 m ASL and 30 m inland from the harbor wall, and near the other AMF measurements. Filters were stored and returned frozen to Colorado State University (CSU), where immersion freezing measurements over a range from 0 to typically -28°C were made using the CSU Ice Spectrometer (IS). This first entailed the removal of particles (agitation of filter in 0.1 µm filtered ultrapure water) from filters to create aliquot suspensions that were subdivided (and frozen) for subsequent analyses. One portion was used to obtain a basic temperature spectrum of INP number concentrations on the basis of the freezing of an array of smaller liquid aliquots during cooling, and relation of the frozen fraction to the total air volume sampled. A subset of other portions of the original suspension aliquots were heat treated (95°C for 20 min) to denature biological INPs (a reduction in concentrations reveals the proportion of all INPs that were likely of biological origin, such as microbial or proteinaceous) and digested in 10% H2O2 at 95°C under UV-B illumination to remove all organic carbon INPs; the residual is presumed to be inorganic (likely mineral) INPs. Other samples have been archived frozen for future potential testing of INP source compositions and aerosol chemical and biological source attribution.

54 ENVIRONMENTAL SCIENCES↗

Ice-nucleating particles (INPs) concentrations from SAIL-Net

This data set contains ice-nucleating particle (INP) concentration spectra collected during the SAIL-Net sampling period, which complemented the Surface Atmosphere Integrated Field Laboratory (SAIL) campaign in the East River watershed near Crested Butte, Colorado. SAIL-Net was a distributed aerosol measurement network designed to investigate aerosol variability across complex mountainous terrain. The data set includes samples from multiple SAIL-Net sites, including AOS, Gothic, Snodgrass, Pumphouse, Irwin, and Top. INP concentrations are reported as a function of freezing temperature, together with confidence limits, sampling times, site location, elevation, sampled air volume, and treatment information. These data provide an analysis-ready record of the INPs across the SAIL-Net network.

activation temperature↗