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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 919 records · Page 51
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Comparative analysis of SARS-CoV-2 neutralization titers reveals consistency between human and animal model serum and across assays

The evolution of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) requires ongoing monitoring to judge the ability of newly arising variants to escape the immune response. A surveillance system necessitates an understanding of differences in neutralization titers measured in different assays and using human and animal serum samples. We compared 18 datasets generated using human, hamster, and mouse serum and six different neutralization assays. Datasets using animal model serum samples showed higher titer magnitudes than datasets using human serum samples in this comparison. Fold change in neutralization of variants compared to ancestral SARS-CoV-2, immunodominance patterns, and antigenic maps were similar among serum samples and assays. Most assays yielded consistent results, except for differences in fold change in cytopathic effect assays. Hamster serum samples were a consistent surrogate for human first-infection serum samples. These results inform the transition of surveillance of SARS-CoV-2 antigenic variation from dependence on human first-infection serum samples to the utilization of serum samples from animal models.

Cell Biology↗
DOE OSTI2021

Highly Basic Clusters in the Herpes Simplex Virus 1 Nuclear Egress Complex Drive Membrane Budding by Inducing Lipid Ordering

During replication of herpesviruses, capsids escape from the nucleus into the cytoplasm by budding at the inner nuclear membrane. This unusual process is mediated by the viral nuclear egress complex (NEC) that deforms the membrane around the capsid by oligomerizing into a hexagonal, membrane-bound scaffold. Here, we found that highly basic membrane-proximal regions (MPRs) of the NEC alter lipid order by inserting into the lipid headgroups and promote negative Gaussian curvature. We also find that the electrostatic interactions between the MPRs and the membranes are essential for membrane deformation. One of the MPRs is phosphorylated by a viral kinase during infection, and the corresponding phosphomimicking mutations block capsid nuclear egress. We show that the same phosphomimicking mutations disrupt the NEC-membrane interactions and inhibit NEC-mediated budding in vitro, providing a biophysical explanation for the in vivo phenomenon. Our data suggest that the NEC generates negative membrane curvature by both lipid ordering and protein scaffolding and that phosphorylation acts as an off switch that inhibits the membrane-budding activity of the NEC to prevent capsid-less budding.

membrane curvature↗
DOE OSTI2021

Pulse-shape discrimination against low-energy Ar-39 beta decays in liquid argon with 4.5 tonne-years of DEAP-3600 data

The DEAP-3600 detector searches for the scintillation signal from dark matter particles scattering on a 3.3 tonne liquid argon target. The largest background comes from 39 Ar beta decays and is suppressed using pulse-shape discrimination (PSD). We use two types of PSD estimator: the prompt-fraction, which considers the fraction of the scintillation signal in a narrow and a wide time window around the event peak, and the log-likelihood-ratio, which compares the observed photon arrival times to a signal and a background model. We furthermore use two algorithms to determine the number of photons detected at a given time: (1) simply dividing the charge of each PMT pulse by the mean single-photoelectron charge, and (2) a likelihood analysis that considers the probability to detect a certain number of photons at a given time, based on a model for the scintillation pulse shape and for afterpulsing in the light detectors. The prompt-fraction performs approximately as well as the log-likelihood-ratio PSD algorithm if the photon detection times are not biased by detector effects. We explain this result using a model for the information carried by scintillation photons as a function of the time when they are detected.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2023

Search for low mass dark matter in DarkSide-50: the bayesian network approach

Abstract We present a novel approach for the search of dark matter in the DarkSide-50 experiment, relying on Bayesian Networks. This method incorporates the detector response model into the likelihood function, explicitly maintaining the connection with the quantity of interest. No assumptions about the linearity of the problem or the shape of the probability distribution functions are required, and there is no need to morph signal and background spectra as a function of nuisance parameters. By expressing the problem in terms of Bayesian Networks, we have developed an inference algorithm based on a Markov Chain Monte Carlo to calculate the posterior probability. A clever description of the detector response model in terms of parametric matrices allows us to study the impact of systematic variations of any parameter on the final results. Our approach not only provides the desired information on the parameter of interest, but also potential constraints on the response model. Our results are consistent with recent published analyses and further refine the parameters of the detector response model.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2020

Microwave Microscopy and Its Applications

Understanding the nanoscale electrodynamic properties of a material at microwave frequencies is of great interest for materials science, condensed matter physics, device engineering, and biology. With specialized probes, sensitive detection electronics, and improved scanning platforms, microwave microscopy has become an important tool for cutting-edge materials research in the past decade. In this article, we review the basic components and data interpretation of microwave imaging and its broad range of applications. In addition to the general-purpose mapping of permittivity and conductivity, microwave microscopy is now exploited to perform quantitative measurements on semiconductor devices, photosensitive materials, ferroelectric domains and domain walls, and acoustic-wave systems. Implementation of the technique in low-temperature and high-magnetic-field chambers has also led to major discoveries in quantum materials with strong correlation and topological order. We conclude the review with an outlook of the ultimate resolution, operation frequency, and future industrial and academic applications of near-field microwave microscopy.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2025

Sorted-cell proteomics reveals an AT1-associated epithelial cornification phenotype and suggests endothelial redox imbalance in human bronchopulmonary dysplasia

Bronchopulmonary dysplasia (BPD) is a neonatal lung disease characterized by inflammation and scarring leading to long-term tissue damage. Previous whole tissue proteomics identified BPD-specific proteome changes and cell type shifts. Little is known about the proteome-level changes within specific cell populations in disease. Here, we sorted epithelial (EPI) and endothelial (ENDO) cell populations based on their differential surface markers from normal and BPD human lungs. Using a low-input compatible sample preparation method (MicroPOT), proteins were extracted and digested into peptides and subjected to liquid chromatography-tandem mass spectrometry (LC-MS/MS) proteome analysis. Of the 4,970 proteins detected, 293 were modulated in abundance or detection in the EPI population and 422 were modulated in ENDO cells. Modulation of proteins associated with actin-cytoskeletal function, such as SCEL, LMO7, and TBA1B was observed in the BPD EPIs. Using confocal imaging and analysis, we validated the presence of aberrant multilayer-like structures comprising SCEL and LMO7, known to be associated with epidermal cornification, in the human BPD lung. This is the first report of the accumulation of cornification-associated proteins in BPD. Their localization in the alveolar parenchyma, primarily associated with alveolar type 1 (AT1) cells, suggests a role in the BPD postinjury response. In the ENDOs, redox balance and mitochondrial function pathways were modulated. Alternative mRNA splicing and cell proliferative functions were elevated in both populations, suggesting potential dysregulation of cell progenitor fate. This study characterized the proteome of epithelial and endothelial cells from the BPD lung for the first time, identifying population-specific changes in BPD pathogenesis.

BPD↗
DOE OSTI2024

Lulabcodes/Coarse-grained_Sc_Model

This repository contains the source code for the coarse-grained, systemic, and dynamic model of Saccharomyces cerevisiae. Related publishments: Emergence of Orchestrated and Dynamic Metabolism of Saccharomyces cerevisiae. Coarse-Grained Modeling Elucidates Differential Metabolism of Saccharomyces cerevisiae under Varied Nutrient Limitations.

Lai, Yi-Hui (Cindy)↗
DOE OSTI2020

The ongoing need for high-resolution regional climate models: Process understanding and stakeholder information

Regional climate modeling addresses our need to understand and simulate climatic processes and phenomena unresolved in global models. High resolution models are generally more skillful in simulating extremes, such as heavy precipitation, strong winds, and severe storms. In addition, research has shown that fine-scale features such as mountains, coastlines, lakes, irrigation, land use, and urban heat islands can substantially influence a region’s climate and its response to changing forcings. Regional climate simulations explicitly simulating convection are now being performed, providing an opportunity to illuminate new physical behavior that previously was represented by parameterizations with large uncertainties. Regional and global models are both advancing toward higher resolution, as computational capacity increases. However, the resolution and ensemble size necessary to produce a sufficient statistical sample of these processes in global models has proven too costly for contemporary supercomputing systems. Regional climate models are thus indispensable tools that complement global models for understanding regional climate variability and change, and are critical for supporting societal responses to changing climate.

Gutowski, William↗
DOE OSTI2020

Pronounced Impact of Salinity on Rapidly Intensifying Tropical Cyclones

We show the importance of salinity for rapidly intensifying Atlantic tropical cyclones and demonstrate the potential for improved prediction of rapid intensification through the inclusion of salinity. Tropical Cyclone (TC) rapid intensification (RI) is difficult to predict and poses a formidable threat to coastal populations. A warm upper ocean is well-known to favor RI, but the role of ocean salinity is less clear. This study shows a strong inverse relationship between salinity and TC RI in the eastern Caribbean and western tropical Atlantic due to near-surface freshening from the Amazon-Orinoco River system. In this region, rapidly intensifying TCs induce a much stronger surface enthalpy flux compared to more weakly intensifying storms, in part due to a reduction in SST cooling caused by salinity stratification. This reduction has a noticeable positive impact on TCs undergoing RI, but the impact of salinity on more weakly intensifying storms is insignificant. These statistical results are confirmed through experiments with an ocean mixed layer model, which show that the salinity-induced reduction in SST cold wakes increases significantly as the storm’s intensification rate increases. Currently, operational statistical-dynamical RI models do not use salinity as a predictor. Through experiments with a statistical RI prediction scheme, it is found that the inclusion of surface salinity significantly improves the RI detection skill, offering promise for improved operational RI prediction. Satellite surface salinity may be valuable for this purpose, given its global coverage and availability in near real-time.

Balaguru, Karthik↗
DOE OSTI2023

The First 30 Years of GEWEX

The Global Energy and Water Cycle Exchanges (GEWEX) project was created more than 30 years ago within the framework of the World Climate Research Programme (WCRP). The aim of this initiative was to address major gaps in our understanding of Earth’s energy and water cycles given a lack of information about the basic fluxes and associated reservoirs of these cycles. GEWEX sought to acquire and set standards for climatological data on variables essential for quantifying water and energy fluxes and for closing budgets at the regional and global scales. In so doing, GEWEX activities led to a greatly improved understanding of processes and our ability to predict them. Such understanding was viewed then, as it remains today, essential for advancing weather and climate prediction from global to regional scales. GEWEX has also demonstrated over time the importance of a wider engagement of different communities and the necessity of international collaboration for making progress on understanding and on the monitoring of the changes in the energy and water cycles under ever increasing human pressures. Here, this paper reflects on the first 30 years of evolution and progress that has occurred within GEWEX. This evolution is presented in terms of three main phases of activity. Progress toward the main goals of GEWEX is highlighted by calling out a few achievements from each phase. A vision of the path forward for the coming decade, including the goals of GEWEX for the future, are also described.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Global Precipitation Experiment—A New World Climate Research Programme Lighthouse Activity

The future state of the global water cycle and the prediction of freshwater availability for humans around the world remain among the challenges of climate research and are relevant to several United Nations Sustainable Development Goals. The Global Precipitation Experiment (GPEX) takes on the challenge of improving the prediction of precipitation quantity, phase, timing, and intensity, characteristics that are products of a complex integrated system. It will achieve this by leveraging existing World Climate Research Programme (WCRP) activities and community capabilities in satellite, surface-based, and airborne observations, modeling, and experimental research and by conducting new and focused activities. It was launched in October 2023 as a WCRP Lighthouse Activity. Here, we present an overview of the GPEX Science Plan that articulates the primary science questions related to precipitation measurements, process understanding, model performance and improvements, and plans for capacity development. The central phase of GPEX is the WCRP Years of Precipitation for 2–3 years with coordinated global field campaigns focusing on different storm types (atmospheric rivers, mesoscale convective systems, monsoons, and tropical cyclones, among others) over different regions and seasons. Activities are planned over the three phases (before, during, and after the Years of Precipitation) spanning a decade. These include gridded data evaluation and development, advanced modeling, enhanced understanding of processes critical to precipitation, multiscale prediction of precipitation events across scales, and capacity development. These activities will be further developed as part of the GPEX Implementation Plan.

Climate change↗
DOE OSTI2026

Object-Based Evaluation of Dynamical and Statistical Downscaled Precipitation Products over CONUS

High-resolution precipitation data, generated through dynamical downscaling (DD) or statistical downscaling (SD) of global climate model output, provide critical information for regional climate assessment and adaptation planning. Most downscaling development and validation have focused on accurate gridscale precipitation construction and ignored the spatial structure of precipitation across model grids and at the event scale. However, many applications, e.g., hydrologic modeling and the analysis using the downscaled precipitation, require a reasonable representation of the spatial structure of precipitation within watersheds. Therefore, a set of standard metrics to evaluate the representation of the spatial structure of individual storms across diverse downscaled precipitation products is desired. To address this need, we conducted an object-based evaluation of precipitation in decades-long DD and SD products over the contiguous United States (CONUS). Specifically, we evaluate their ability to reproduce various features of precipitation objects in the observations: total volume, precipitation area, peak intensity, and spatial structure. Multiple metrics (bias, Perkins score, and nonparametric statistical tests) are used to quantify model performance. Our evaluation reveals notable variations in performance among individual products across different climate zones and seasons, as well as between extreme and nonextreme events. In general, most DD products exhibit balanced performance across the four precipitation object features, while SD products vary more significantly in their performance across products. Based on this comprehensive evaluation, we provide guidance on choosing downscaled products for specific regions, seasons, and precipitation object features. These findings and recommendations can inform precipitation-relevant modeling and analysis over CONUS, guide future downscaling technique developments, and provide actionable information for climate impact assessment and adaptation.

Downscaling↗
DOE OSTI2023

Diurnal MCSs Precede the Genesis of Tropical Cyclone Mora (2017): The Role of Convectively Forced Gravity Waves

In this work, a novel high-resolution regional reanalysis is used to investigate the mesoscale processes that preceded the formation of Tropical Cyclone (TC) Mora (2017). Both satellite observations and the regional reanalysis show early morning mesoscale convective systems (MCSs) persistently initiated and organized in the downshear quadrant of the preexisting tropical disturbance a few days prior to the genesis of TC Mora. The diurnal MCSs gradually enhanced the meso-α-scale vortex near the center of the preexisting tropical disturbance through vortex stretching, providing a vorticity-rich and moist environment for the following burst of deep convection and enhancement of the meso-β-scale vortex. The regional reanalysis shows that the gravity waves that radiated from afternoon convection over the northern coast of the Bay of Bengal might play an important role in modulating the diurnal cycle of pregenesis MCSs. The diurnal convectively forced gravity waves increased the tropospheric stability, reduced the column saturation fraction, and suppressed deep convection within the preexisting tropical disturbance from noon to evening. A similar quasi-diurnal cycle of organized deep convection prior to TC genesis has also been observed over other basins. However, modeling studies are needed to conclusively demonstrate the relationships between the gravity waves and pregenesis diurnal MCSs. Also, whether diurnal gravity waves play a similar role in modulating the pregenesis deep convection in other TCs is worth future investigations.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

A Moist Potential Vorticity Model for Midlatitude Long-Lived Mesoscale Convective Systems over Land

Mesoscale convective systems (MCSs) bring large amounts of rainfall and strong wind gusts to the midlatitude land regions, with significant impacts on local weather and hydrologic cycle. However, weather and climate models face a huge challenge in accurately modeling the MCS life cycle and the associated precipitation, highlighting an urgent need for a better understanding of the underlying mechanisms of MCS initiation and propagation. From a theoretical perspective, a suitable model to capture the realistic properties of MCSs and isolate the bare-bones mechanisms for their initiation, intensification, and eastward propagation is still lacking. To simulate midlatitude MCSs over land, we develop a simple moist potential vorticity (PV) model that readily describes the interactions among PV perturbations, air moisture, and soil moisture. Multiple experiments with or without various environmental factors and external forcing are used to investigate their impacts on MCS dynamics and mesoscale circulation vertical structures. The result shows that mechanical forcing can induce lower-level updraft and cooling, providing favorable conditions for MCS initiation. A positive feedback among surface winds, evaporation rate, and air moisture similar to the wind-induced surface heat exchange over tropical ocean is found to support MCS intensification. Both background surface westerlies and vertical westerly wind shear are shown to provide favorable conditions for the eastward propagation of MCSs. Last, our result highlights the crucial role of stratiform heating in shaping mesoscale circulation response. In conclusion, the model should serve as a useful tool for understanding the fundamental mechanisms of MCS dynamics.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Sensitivity of surface temperature to oceanic forcing via q-Flux Green’s function experiments. Part III: asymmetric response to warming and cooling

Climate response is often assumed to be linear in climate sensitivity studies. However, by examining the surface temperature (TS) response to pairs of oceanic forcings of equal amplitude but opposite sign in a large set of local q-flux perturbation experiments with CAM5 coupled to a slab, we find strong asymmetry in TS responses to the heating and cooling forcings, indicating a strong nonlinearity intrinsic to the climate system examined. Regardless of where the symmetric forcing is placed, the cooling response to the negative forcing always exceeds the warming to the positive forcing, implying an intrinsic inclination towards cooling of our current climate. Thus, the ongoing global warming induced by increasing greenhouse gases may have already been alleviated by the asymmetric component of the response. The common asymmetry in TS response peaks in high latitudes, especially along sea ice edges, with notable seasonal dependence. Decomposition into different radiative feedbacks through a radiative kernel indicates that the asymmetry in the TS response is realized largely through lapse rate and albedo feedbacks. Further process interference experiments disabling the seasonal cycle and/or sea ice reveal that the asymmetry originates ultimately from the presence of the sea ice component and is further amplified by the seasonal cycle. The fact that a pair of opposite tropical q-flux forcings can excite very similar asymmetric response as a pair placed at 55°S strongly suggests the asymmetric response is a manifestation of an internal mode of the climate model system.

Liu, Fukai↗
DOE OSTI2021

The Relationship between Precipitation and Precipitable Water in CMIP6 Simulations and Implications for Tropical Climatology and Change

It is well documented that over the tropical oceans, column-integrated precipitable water (pw) and precipitation (P) have a nonlinear relationship. In this study moisture budget analysis is used to examine this P–pw relationship in a normalized precipitable water framework. It is shown that the parameters of the nonlinear relationship depend on the vertical structure of moisture convergence. Specifically, the precipitable water values at which precipitation is balanced independently by evaporation versus by moisture convergence define a critical normalized precipitable water, pw nc . This is a measure of convective inhibition that separates tropical precipitation into two regimes: a local evaporation-controlled regime with widespread drizzle and a precipitable water–controlled regime. Most of the 17 CMIP6 historical simulations examined here have higher pw nc compared to ERA5, and more frequently they operate in the drizzle regime. When compared to observations, they overestimate precipitation over the high-evaporation oceanic regions off the equator, thereby producing a ‘‘double ITCZ’’ feature, while underestimating precipitation over the large tropical landmasses and over the climatologically moist oceanic regions near the equator. The responses to warming under the SSP585 scenario are also examined using the normalized precipitable water framework. It is shown that the critical normalized precipitable water value at which evaporation versus moisture convergence balance precipitation decreases as a result of the competing dynamic and thermodynamic responses to warming, resulting in an increase in drizzle and total precipitation. Statistically significant historical trends corresponding to the thermodynamic and dynamic changes are detected in ERA5 and in lowintensity drizzle precipitation in the PERSIANN precipitation dataset.

54 ENVIRONMENTAL SCIENCES↗