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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 919 records · Page 51
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets

BigNeuron is an open community bench-testing platform with the goal of setting open standards for accurate and fast automatic neuron tracing. We gathered a diverse set of image volumes across several species that is representative of the data obtained in many neuroscience laboratories interested in neuron tracing. Here, we report generated gold standard manual annotations for a subset of the available imaging datasets and quantified tracing quality for 35 automatic tracing algorithms. The goal of generating such a hand-curated diverse dataset is to advance the development of tracing algorithms and enable generalizable benchmarking. Together with image quality features, we pooled the data in an interactive web application that enables users and developers to perform principal component analysis, t-distributed stochastic neighbor embedding, correlation and clustering, visualization of imaging and tracing data, and benchmarking of automatic tracing algorithms in user-defined data subsets. The image quality metrics explain most of the variance in the data, followed by neuromorphological features related to neuron size. Furthermore, we observed that diverse algorithms can provide complementary information to obtain accurate results and developed a method to iteratively combine methods and generate consensus reconstructions. The consensus trees obtained provide estimates of the neuron structure ground truth that typically outperform single algorithms in noisy datasets. However, specific algorithms may outperform the consensus tree strategy in specific imaging conditions. Finally, to aid users in predicting the most accurate automatic tracing results without manual annotations for comparison, we used support vector machine regression to predict reconstruction quality given an image volume and a set of automatic tracings.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2025

Distortions in charged-particle images of laser direct-drive inertial confinement fusion implosions

Energetic charged particles generated by inertial confinement fusion (ICF) implosions encode information about the spatial morphology of the hotspot and dense fuel during the time of peak fusion reactions. The knock-on deuteron imager (KoDI) was developed at the Omega Laser Facility to image these particles in order to diagnose low-mode asymmetries in the hotspot and dense fuel layer of cryogenic deuterium–tritium ICF implosions. However, the images collected are distorted in several ways that prevent reconstruction of the deuteron source. In this paper, we describe these distortions and a series of attempts to mitigate or compensate for them. We present several potential mechanisms for the distortions, including a new model for scattering of charged particles in filamentary electric or magnetic fields surrounding the implosion. Particle-tracing is used to create synthetic KoDI data based on the filamentary field model that reproduces the main experimentally observed image distortions. We conclude that the filamentary scattering model best matches the observed image distortions. Finally, we discuss potential impacts of filamentary fields on other charged-particle diagnostics.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2022

Ambient pressure X-ray photoelectron spectroscopy study of room-temperature oxygen adsorption on Cu(1 0 0) and Cu(1 1 1)

We investigated the room-temperature chemisorption of oxygen on Cu(1 0 0) and Cu(1 1 1) using ambient-pressure X-ray photoelectron spectroscopy (APXPS). A shoulder-to-shoulder comparison between the oxygen-gas titration on the two surfaces reveals that Cu(1 0 0) is the more active for oxygen dissociative chemisorption when the surfaces are clean. The (2 $\sqrt{2}$ × $\sqrt{2}$)R45o missing-row reconstruction appears in Cu(1 0 0)’s LEED image after about 10 4 Langmuir of oxygen exposure, whereas on Cu(1 1 1), no long-range ordering was observed throughout the whole experiment. An oxide layer consisting of cuprous and cupric oxide shows up on Cu(1 1 1) at an oxygen exposure that is significantly lower than for Cu(1 0 0). This observation suggests that the presence of (2 $\sqrt{2}$ × $\sqrt{2}$)R45o missing-row reconstruction layer slows down Cu(1 0 0) oxidation. Literature has widely reported that surface morphology influences the copper oxidation process. This study provides an XPS demonstration that copper surface oxide formation in O 2 at room temperature depends on the surface crystallographic orientation.

36 MATERIALS SCIENCE↗
DOE OSTI2022

Real-time 3D analysis during electron tomography using tomviz

The demand for high-throughput electron tomography is rapidly increasing in biological and material sciences. However, this 3D imaging technique is computationally bottlenecked by alignment and reconstruction which runs from hours to days. We demonstrate real-time tomography with dynamic 3D tomographic visualization to enable rapid interpretation of specimen structure immediately as data is collected on an electron microscope. Using geometrically complex chiral nanoparticles, we show volumetric interpretation can begin in less than 10 minutes and a high-quality tomogram is available within 30 minutes. Real-time tomography is integrated into tomviz, an open-source and cross-platform 3D data analysis tool that contains intuitive graphical user interfaces (GUI), to enable any scientist to characterize biological and material structure in 3D.

36 MATERIALS SCIENCE↗
DOE OSTI2020

A biomimetic eye with a hemispherical perovskite nanowire array retina

Human eyes possess exceptional image-sensing characteristics such as an extremely wide field of view, high resolution and sensitivity with low aberration1. Biomimetic eyes with such characteristics are highly desirable, especially in robotics and visual prostheses. However, the spherical shape and the retina of the biological eye pose an enormous fabrication challenge for biomimetic devices2,3. In this paper, we present an electrochemical eye with a hemispherical retina made of a high-density array of nanowires mimicking the photoreceptors on a human retina. The device design has a high degree of structural similarity to a human eye with the potential to achieve high imaging resolution when individual nanowires are electrically addressed. Additionally, we demonstrate the image-sensing function of our biomimetic device by reconstructing the optical patterns projected onto the device. This work may lead to biomimetic photosensing devices that could find use in a wide spectrum of technological applications.

42 ENGINEERING↗
DOE OSTI2020

Analyzer-free linear dichroic ptychography

Linear dichroism is an important tool to characterize the transmission matrix and determine the crystal or orbital orientation in a material. To achieve high-resolution mapping of transmission properties, we introduce the linear-dichroism scattering model in ptychographic imaging and develop an efficient two-stage reconstruction algorithm. Using the proposed algorithm on a uniaxial material, the dichroic transmission matrix can be recovered without an analyzer by using ptychography measurements with as few as three different polarization angles, with the help of an empty region to remove phase ambiguities.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

A Systems Approach to Estimating the Uncertainty Limits of X-Ray Radiographic Metrology

Micro- and nanomanufacturing capabilities have rapidly expanded over the past decade to include complex three-dimensional (3D) structure fabrication; however, the metrology required to accurately assess these processes via part inspection and characterization has struggled to keep pace. X-ray computed tomography (CT) is considered an ideal candidate for providing the critically needed metrology on the smallest scales, especially internal features, or inaccessible regions. X-ray CT supporting micro- and nanomanufacturing often push against the poorly understood resolution and variation limits inherent to the machines, which can distort or hide fine structures. In this study, we have developed and experimentally verify a comprehensive analytical uncertainty propagation signal variation flow graph (SVFG) model for X-ray radiography in this work to better understand resolution and image variability limits on the small scale. The SVFG approach captures, quantifies, and predicts variations occurring in the system that limit metrology capabilities, particularly in the micro/nanodomain. This work is the first step to achieving full uncertainty modeling of CT reconstructions and provides insight into improving X-ray attenuation imaging systems. The SVFG methodology framework is applied to generate a complete basis set of functions describing the major sources of variation in radiographs. Five models are identified, covering variation in energy, intensity, length, blur, and position. Radiographic system experiments are defined to measure the parameters required by the SVFGs. Best practices are identified for these measurements. The SVFG models are confirmed via direct measurement of variation to predict variation within 30% on average.

47 OTHER INSTRUMENTATION↗
DOE OSTI2021

LoTToR: An Algorithm for Missing-Wedge Correction of the Low-Tilt Tomographic 3D Reconstruction of a Single-Molecule Structure (LoTToR) v1.0

The low-tilt tomographic reconstruction (LoTToR) method is a post-processing method to correct the missing-wedge artifact, which contains a model-free iteration process under a set of constraints in real and reciprocal spaces. A proof of concept is conducted by using the LoTToR on a phantom, i.e., a simulated 3D reconstruction from a low-tilt series of images, including that within a tilt range of ±15°. The method is validated by using both negative-staining (NS) and cryo-electron tomography (cryo-ET) experimental data. A significantly reduced missing-wedge artifact verifies the capability of LoTToR, suggesting a new tool to support the future study of macromolecular dynamics, fluctuation and chemical activity from the viewpoint of single-molecule 3D structure determination. Moreover, the software can be used for hospital computer tomography (CT) to reduce the radiation damage to patients without reducing the CT image quality.

Ren, Gang↗
DOE OSTI2024

recon3d

SAND2025-00533O recon3d is a software tool that provides automated 3D reconstruction and meshing capabilities. It processes labeled 3D image data from various sources, starting from image stacks, and calculates 3D feature distributions like size, shape, and location. The software also has tools for downscaling rectilinear grid data and creating tetrahedral meshes directly from image data. recon3d can be used by novice users via the command line with a properly formatted configuration file. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Emery, John↗
DOE OSTI2022

Randomized probe imaging through deep k-learning

Randomized probe imaging (RPI) is a single-frame diffractive imaging method that uses highly randomized light to reconstruct the spatial features of a scattering object. The reconstruction process, known as phase retrieval, aims to recover a unique solution for the object without measuring the far-field phase information. Typically, reconstruction is done via time-consuming iterative algorithms. In this work, we propose a fast and efficient deep learning based method to reconstruct phase objects from RPI data. The method, which we call deep k-learning, applies the physical propagation operator to generate an approximation of the object as an input to the neural network. This way, the network no longer needs to parametrize the far-field diffraction physics, dramatically improving the results. Deep k-learning is shown to be computationally efficient and robust to Poisson noise. The advantages provided by our method may enable the analysis of far larger datasets in photon starved conditions, with important applications to the study of dynamic phenomena in physical science and biological engineering.

Guo, Zhen (ORCID:0000000213473451)↗
DOE OSTI2021

SU(n) and Quantum SU(n) Symmetries in Physical Systems [Slides]

Presence of SU(n) or other Lie group symmetry in a physical system is its powerful, usually underutilized property. In many cases it allows for finding analytical solutions to nonlinear differential equations describing this system. Power of the method is presented on diversified examples from mathematical physics: Lie-group symmetries in finding solutions of generalized, multidimensional theory of gravity; analytical Dirac–equation solutions for description of conducting polymers; stability of qubit states in quantum computers; spatial defects in condensed matter; reconstruction of 3D object from its 2D tomographic image; significant improvement of numerical solutions stability for Euler equations. The next question after obtaining such Lie group symmetric solution is: does a generalized solution with appropriate quantum group symmetry exists for the given physical system, and if yes what is the physical meaning of the deformation parameter q introduced by such solution. In many cases it can be identified. Any SU(n) solution is by its nature singular, assuming a perfect symmetry of the physical system discussed. Such solution gives a powerful insight to theoretical physics, yet the assumption may be too demanding for experimental applications. Deformation parameter q from a quantum group symmetry allows for a continuum of solutions, more applicable to experiments.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2021

Initial Measurements with the Prototype Parallel-Slit Ring Collimator Fast Neutron Emission Tomography System

Since 2017, Oak Ridge National Laboratory (ORNL) has been developing a passive fast-neutron emission tomography capability. The goal of this development is the ability to quantify the neutron source strength of individual fuel pins (rods) in spent nuclear fuel assemblies. Such a system could be used to measure the burnup of each fuel pin in a spent fuel assembly to take burnup credit when loading dry storage casks or to count individual fuel pins in spent fuel assemblies for safeguards purposes. At present, a laboratory prototype imager has been built and initial imaging measurements performed. The purpose of this prototype is to demonstrate imaging capability sufficient to resolve individual fuel pins in spent fuel assemblies, and in initial measurements, neutron sources separated by a spacing of 1.27 cm (similar to the spacing between fuel pins in commercial pressurized water reactor 17×17 nuclear fuel assemblies) have been resolved. This report documents the as-built imager, first measurements performed with it, and tomographic reconstructions performed using the measured data.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2022

Radiographic Imaging and Tomography

Radiographic imaging and tomography (RadIT) come in many flavors such as X-ray imaging and tomography (IT), proton IT, neutron IT, muon IT, neutrino IT, etc. We identify five RadIT themes: Physics, Sources, Detectors, Methods, and Data Science, which are integral parts of image interpretation and three-dimensional (3D) tomographic reconstruction. Traditionally, RadIT have been driven by medicine, non-destructive testing, material sciences, and security applications. The latest thrusts of growth come from automation, machine vision, additive manufacturing and virtual reality (‘metaverse’). The five RadIT themes parallel their counterparts in optical IT. Synergies among different forms of RadIT and with optical IT motivate further advances towards multi-modal IT and quantum IT.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2020

Reconstructing 3D Charge Depositions in the MicroBooNE Liquid Argon Time Projection Chamber using Convolutional Neural Networks

We have developed a convolutional neural network (CNN) that reconstructs the three dimensional location of ionization produced by charge particles traversing a wire-readout liquid argon time projection chamber (LArTPC) at MicroBooNE. This method is the first CNN application to reconstruct 3D space points directly from two dimensional images of the different wire plane views. I.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2022

A Weighted Analysis to Improve the X-Ray Polarization Sensitivity of the Imaging X-ray Polarimetry Explorer

Imaging X-ray Polarimetry Explorer (IXPE) is a Small Explorer mission that was launched at the end of 2021 to measure the polarization of X-ray emission from tens of astronomical sources. Its focal-plane detectors are based on the Gas Pixel Detector, which measures the polarization by imaging photoelectron tracks in a gas mixture and reconstructing their initial directions. The quality of the single track, and then the capability of correctly determining the original direction of the photoelectron, depends on many factors, e.g., whether the photoelectron is emitted at low or high inclination with respect to the collection plane or the occurrence of a large Coulomb scattering close to the generation point. The reconstruction algorithm used by IXPE to obtain the photoelectron emission direction also calculates several properties of the shape of the tracks that characterize the process. In this paper we compare several such properties and identify the best one to weight each track on the basis of the reconstruction accuracy. We demonstrate that significant improvement in sensitivity can be achieved with this approach and for this reason it will be the baseline for IXPE data analysis.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS1985

Parallel VLSI Architecture

Fermat number transformation convolutes two digital data sequences. Very-large-scale integration (VLSI) applications, such as image and radar signal processing, X-ray reconstruction, and spectrum shaping, linear convolution of two digital data sequences of arbitrary lenghts accomplished using Fermat number transform (ENT).

Truong, T. K.↗
NASA NTRS1990

Spectral Analysis Of Linear, Shift-Invariant Interpolants

Method of analysis provides quantitative measure of reconstruction and interpolation performances of linear, shift-invariant interpolants. Criterion of performance based upon mean-square error of difference between sampled and reconstructed functions. Applicable to reconstruction algorithms used in processing of signals and images and to types of interpolants used in numerical analysis, computer-aided design, and computer graphics.

Lansing, Donald L.↗
NASA NTRS1992

A study of TRIGLYCINE SULFATE (TGS) crystals from the International Microgravity Laboratory Mission (IML-1)

Preliminary evaluation of the data was made during the hologram processing procedure. A few representative holograms were selected and reconstructed in the HGS; photographs of sample particle images were made to illustrate the resolution of all three particle sizes. Based on these evaluations slight modifications were requested in the hologram processing procedure to optimize the hologram exposure in the vicinity of the crystal. Preliminary looks at the data showed that we are able to see and track all three sizes of particles throughout the chamber. Because of the vast amount of data available in the holograms, it was recommended that we produce a detailed data reduction plan with prioritization on the different types of data which can be extracted from the holograms.

Lal, R. B.↗