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DOE OSTI2025

TransPlatformer

We propose TransPlatformer for translating toxicogenomics from one platform to another. Transcriptomic profiling has evolved through multiple generations of technology, from microarrays (e.g., Affymetrix, CodeLink) to more recent high-throughput sequencing and targeted panels such as S1500+. Microarrays, which dominated gene expression studies in the early 2000s, provided affordable and high-throughput transcript quantification but suffered from cross-hybridization issues and limited dynamic range . RNA-Seq, introduced in the late 2000s, revolutionized transcriptomics by enabling unbiased and comprehensive gene expression analysis, albeit at higher costs and computational demands . Despite advances, many studies rely on historical microarray data, necessitating the translation of legacy data into modern platforms to ensure continuity and comparability. This translation is complicated by factors such as platform-specific probe design, differences in transcript coverage, and batch effects . Existing methods for cross-platform mapping include statistical normalization, machine learning models, and biological anchoring approaches. The ability to translate transcriptomic data between platforms has broad implications, including enhanced meta-analyses, improved toxicological modeling, and better integration of historical datasets with contemporary research. TransPlatformer seeks to contribute to this effort by evaluating translation methodologies and proposing novel strategies to improve cross-platform gene expression harmonization. In this repository there are code examples for TransPlatformer implementation

Cong, Guojing↗

DOE OSTI2022

Deep Neural Network Algorithm for CMC Microstructure Characterization and Variability Quantification

Microstructure characterization and variability quantification are crucial for understanding ceramic matrix composites (CMCs) mechanical behavior and deformation mechanisms across length scales. Traditionally, analyses of the micrographs obtained from microscopy are labor-intensive. However, with the vast improvement in computer vision (CV) and deep learning (DL), an automated algorithm can be designed to extract essential microstructure variability from micrographs which can then be used to construct a statistically representative volume element (SRVE). The DL-based algorithm spans the taxonomy of microstructure analyses, including semantic segmentation of microstructure constituents, secondary phases, matrix/fiber interface, and defects, and quantifying the microstructure variability in terms of probability distributions. In this work, C/SiNC and SiC/SiNC CMCs microstructures are semantically segmented through a deep convolutional neural network, followed by variability quantification through the implementation of a fully connected regression layer, hence forming a deep regression network. The deep regression network operates in a feedforward regime, in which the neuron output signal traverses through the network in a unidirectional manner. The weight tensor associated with each layer is updated through a backpropagation stochastic gradient descent approach. The input gray-scale image obtained through in-house scanning electron microscope and confocal microscope micrographs is augmented through affine transformations to increase the training set size, which is then processed through four strided convolutional layers. This compresses the image resolution by half at each layer while increasing the image depth by applying different filters (image encoding). The class activation maps (CAMs) corresponding to the applied filters highlight the key architectural features and assist with the semantic segmentation of the microstructure.

Hamza, Mohamed H.↗

NASA NTRS1974

Remote sensing techniques for mapping range sites and estimating range yield

Image interpretation procedures for determining range yield and for extrapolating range information were investigated for an area of the Pine Ridge Indian Reservation in southwestern South Dakota. Soil and vegetative data collected in the field utilizing a grid sampling design and digital film data from color infrared film and black and white films were analyzed statistically using correlation and regression techniques. The pattern recognition techniques used were K-class, mode seeking, and thresholding. The herbage yield equation derived for the detailed test site was used to predict yield for an adjacent similar field. The herbage yield estimate for the adjacent field was 1744 lbs. of dry matter per acre and was favorably compared to the mean yield of 1830 lbs. of dry matter per acre based upon ground observations. Also an inverse relationship was observed between vegetative cover and the ratio of MSS 5 to MSS 7 of ERTS-1 imagery.

Benson, L. A.↗

NASA NTRS1979

Assessment of economic factors affecting the satellite power system. Volume 2: The systems implications of rectenna siting issues

The feasibility was evaluated of finding potential sites for Solar Power Satellite (SPS) receiving antennas (rectennas) in the continental United States, in sufficient numbers to permit the SPS to make a major contribution to U.S. generating facilities, and to give statistical validity to an assessment of the characteristics of such sites and their implications for the design of the SPS system. It is found that the cost-optimum power output of the SPS does not depend on the particular value assigned to the cost per unit area of a rectenna and its site, as long as it is independent of rectenna area. Many characteristics of the sites chosen affect the optimum design of the rectenna itself.

Chapman, P. K.↗

NASA NTRS1980

Analysis of SETI data collected in the parasitic mode

A system for performing SETI observations continuously as part of non-SETI observations at a radio observatory is presented, and the analysis of results obtained by the parasitic system is discussed. The system, designated SERENDIP, is a real-time microprocessor-controlled spectrum analyzer with algorithms for performing statistical operations and recording those spectra with characteristics presumed to be typical of intelligent rather than astrophysical origin. Programs also exist for the post-acquisition analysis of signal autocorrelation, power spectra, time behavior and positional coordinates, and for a generalized cluster analysis to detect clusters of signal detections. In a recent run of 35 days, the SERENDIP system detected 4000 narrowband spectra exceeding a preset threshold, of which 98% were determined to be of instrumental origin. The remaining class of detections is also believed to be instrumental, although not as well organized as the first signals, and means are currently being sought for eliminating them.

Bowyer, S.↗

NASA NTRS1982

Current NASA studies for a Far Ultraviolent Spectrographic Explorer (FUSE)

The NASA plans for FUSE, a satellite which obtains spectra with resolutions between 100,000 and 100 in the spectral regions from 912 to 1216A and 100 to 912A, are outlined. Scientific problems which can be tackled by FUSE, but not by IUE or the Space Telescope, are discussed. A grazing incidence echelle and a hybrid echelle design are presented. They have high throughput, large simultaneous spectral range, and low background photon counting statistics. The satellite operational organization is similar to that of IUE.

Linsky, J.↗

NASA NTRS1985

Bypass transition to turbulence and research Desiderata

Bypass transitions are seldom mentioned in texts or meetings on instability and transition to wall turbulence. The nature of a number of bypass transitions is illustrated by example. Until this characteristics is truly understood predicting transition on the basis of theory or statistically inadequate correlations (as they all are) entails risks that should be considered in justifying any design involving transition. A historical overview of bypass transition identified on blunt bodies is given.

Morkovin, M. V.↗

NASA NTRS1986

Five-Parameter Bivariate Probability Distribution

NASA technical memorandum presents four papers about five-parameter bivariate gamma class of probability distributions. With some overlap of subject matter, papers address different aspects of theories of these distributions and use in forming statistical models of such phenomena as wind gusts. Provides acceptable results for defining constraints in problems designing aircraft and spacecraft to withstand large wind-gust loads.

Tubbs, J.↗

NASA NTRS1991

Data simulation for the Lightning Imaging Sensor (LIS)

This project aims to build a data analysis system that will utilize existing video tape scenes of lightning as viewed from space. The resultant data will be used for the design and development of the Lightning Imaging Sensor (LIS) software and algorithm analysis. The desire for statistically significant metrics implies that a large data set needs to be analyzed. Before 1990 the quality and quantity of video was insufficient to build a usable data set. At this point in time, there is usable data from missions STS-34, STS-32, STS-31, STS-41, STS-37, and STS-39. During the summer of 1990, a manual analysis system was developed to demonstrate that the video analysis is feasible and to identify techniques to deduce information that was not directly available. Because the closed circuit television system used on the space shuttle was intended for documentary TV, the current value of the camera focal length and pointing orientation, which are needed for photoanalysis, are not included in the system data. A large effort was needed to discover ancillary data sources as well as develop indirect methods to estimate the necessary parameters. Any data system coping with full motion video faces an enormous bottleneck produced by the large data production rate and the need to move and store the digitized images. The manual system bypassed the video digitizing bottleneck by using a genlock to superimpose pixel coordinates on full motion video. Because the data set had to be obtained point by point by a human operating a computer mouse, the data output rate was small. The loan and subsequent acquisition of a Abekas digital frame store with a real time digitizer moved the bottleneck from data acquisition to a problem of data transfer and storage. The semi-automated analysis procedure was developed using existing equipment and is described. A fully automated system is described in the hope that the components may come on the market at reasonable prices in the next few years.

Boeck, William L.↗

NASA NTRS1992

Evaluating model accuracy for model-based reasoning

Described here is an approach to automatically assessing the accuracy of various components of a model. In this approach, actual data from the operation of a target system is used to drive statistical measures to evaluate the prediction accuracy of various portions of the model. We describe how these statistical measures of model accuracy can be used in model-based reasoning for monitoring and design. We then describe the application of these techniques to the monitoring and design of the water recovery system of the Environmental Control and Life Support System (ECLSS) of Space Station Freedom.

Chien, Steve↗

NASA NTRS1993

Analysis of the tropospheric water distribution during FIRE 2

The Penn State/NCAR mesoscale model, as adapted for use at ARC, was used as a testbed for the development and validation of cloud models for use in General Circulation Models (GCM's). This modeling approach also allows us to intercompare the predictions of the various cloud schemes within the same dynamical framework. The use of the PSU/NCAR mesoscale model also allows us to compare our results with FIRE-II (First International Satellite Cloud Climatology Project Regional Experiment) observations, instead of climate statistics. Though a promising approach, our work to date revealed several difficulties. First, the model by design is limited in spatial coverage and is only run for 12 to 48 hours at a time. Hence the quality of the simulation will depend heavily on the initial conditions. The poor quality of upper-tropospheric measurements of water vapor is well known and the situation is particularly bad for mid-latitude winter since the coupling with the surface is less direct than in summer so that relying on the model to spin-up a reasonable moisture field is not always successful. Though one of the most common atmospheric constituents, water vapor is relatively difficult to measure accurately, especially operationally over large areas. The standard NWS sondes have little sensitivity at the low temperatures where cirrus form and the data from the GOES 6.7 micron channel is difficult to quantify. For this reason, the goals of FIRE Cirrus II included characterizing the three-dimensional distribution of water vapor and clouds. In studying the data from FIRE Cirrus II, it was found that no single special observation technique provides accurate regional distributions of water vapor. The Raman lidar provides accurate measurements, but only at the Hub, for levels up to 10 km, and during nighttime hours. The CLASS sondes are more sensitive to moisture at low temperatures than are the NWS sondes, but the four stations only cover an area of two hundred kilometers on a side. The aircraft give the most accurate measurements of water vapor, but are limited in spatial and temporal coverage. This problem is partly alleviated by the use of the MAPS analyses, a four-dimensional data assimilation system that combines the previous 3-hour forecast with the available observations, but its upper-level moisture analyses are sometimes deficient because of the vapor measurement problem. An attempt was made to create a consistent four-dimensional description of the water vapor distribution during the second IFO by subjectively combining data from a variety of sources, including MAPS analyses, CLASS sondes, SPECTRE sondes, NWS sondes, GOES satellite analyses, radars, lidars, and microwave radiometers.

Westphal, Douglas L.↗

NASA NTRS1994

Assessment of the SFC database for analysis and modeling

SFC is one of the four clusters that make up the Integrated Work Control System (IWCS), which will integrate the shuttle processing databases at Kennedy Space Center (KSC). The IWCS framework will enable communication among the four clusters and add new data collection protocols. The Shop Floor Control (SFC) module has been operational for two and a half years; however, at this stage, automatic links to the other 3 modules have not been implemented yet, except for a partial link to IOS (CASPR). SFC revolves around a DB/2 database with PFORMS acting as the database management system (DBMS). PFORMS is an off-the-shelf DB/2 application that provides a set of data entry screens and query forms. The main dynamic entity in the SFC and IOS database is a task; thus, the physical storage location and update privileges are driven by the status of the WAD. As we explored the SFC values, we realized that there was much to do before actually engaging in continuous analysis of the SFC data. Half way into this effort, it was realized that full scale analysis would have to be a future third phase of this effort. So, we concentrated on getting to know the contents of the database, and in establishing an initial set of tools to start the continuous analysis process. Specifically, we set out to: (1) provide specific procedures for statistical models, so as to enhance the TP-OAO office analysis and modeling capabilities; (2) design a data exchange interface; (3) prototype the interface to provide inputs to SCRAM; and (4) design a modeling database. These objectives were set with the expectation that, if met, they would provide former TP-OAO engineers with tools that would help them demonstrate the importance of process-based analyses. The latter, in return, will help them obtain the cooperation of various organizations in charting out their individual processes.

Centeno, Martha A.↗

NASA NTRS1999

TRMM Field Campaigns: Objectives and Status Report

The Tropical Rainfall Measuring Mission (TRMM) satellite has been sending valuable data since launch in November 1997. Some of the key goals of the joint NASA (US) and NASDA (Japan) mission are: (1) to estimate the four-dimensional diabatic heating in the tropical and subtropical atmosphere, (2) understand the role of latent heating in driving tropical and extratropical circulations, (3) obtain monthly area-averaged estimates of rainfall over the data-sparse oceans, and (4) estimate the relative contribution of convective and stratiform precipitation over different regions during different seasons. The overarching scientific objective is to understand and improve estimates of rainfall and latent heating profiles throughout the global tropics. This requires observations for fundamental understanding of cloud dynamics and microphysics, as well as for validation, testing assumptions and error estimates of cloud-resolving models, forward radiative transfer models, algorithms used to estimate rainfall statistics and vertical structure of precipitation from surface-based radar, and from satellites. Field experiments designed to contribute to this understanding have been conducted in Texas and the South China Sea in spring of 1998, Florida in summer of 1998, and interior Brazil in (boreal) winter 1999. In summer 1999, a major oceanic campaign will be based at Kwajalein Atoll. Some early results will be highlighted, noting some significant contrasts between oceanic and continental convective systems.

Zipser, Edward I.↗

NASA NTRS2002

Can Tectonic and Fluvial Structures be Used to Date a Planetary Surface?

For the first part of our investigation, we will use a new artificial intelligent (AI) software code designed to: (1) recognize craters down to two pixel resolution in size and (2) calculate crater statistics on all available Viking imagery. Additional information is contained in the original extended abstract.

Vinogradova, T.↗

NASA NTRS1987

Pile Driving

Machine-oriented structural engineering firm TERA, Inc. is engaged in a project to evaluate the reliability of offshore pile driving prediction methods to eventually predict the best pile driving technique for each new offshore oil platform. Phase I Pile driving records of 48 offshore platforms including such information as blow counts, soil composition and pertinent construction details were digitized. In Phase II, pile driving records were statistically compared with current methods of prediction. Result was development of modular software, the CRIPS80 Software Design Analyzer System, that companies can use to evaluate other prediction procedures or other data bases.

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NASA NTRS2007

Stress Rupture Life Reliability Measures for Composite Overwrapped Pressure Vessels

Composite Overwrapped Pressure Vessels (COPVs) are often used for storing pressurant gases onboard spacecraft. Kevlar (DuPont), glass, carbon and other more recent fibers have all been used as overwraps. Due to the fact that overwraps are subjected to sustained loads for an extended period during a mission, stress rupture failure is a major concern. It is therefore important to ascertain the reliability of these vessels by analysis, since the testing of each flight design cannot be completed on a practical time scale. The present paper examines specifically a Weibull statistics based stress rupture model and considers the various uncertainties associated with the model parameters. The paper also examines several reliability estimate measures that would be of use for the purpose of recertification and for qualifying flight worthiness of these vessels. Specifically, deterministic values for a point estimate, mean estimate and 90/95 percent confidence estimates of the reliability are all examined for a typical flight quality vessel under constant stress. The mean and the 90/95 percent confidence estimates are computed using Monte-Carlo simulation techniques by assuming distribution statistics of model parameters based also on simulation and on the available data, especially the sample sizes represented in the data. The data for the stress rupture model are obtained from the Lawrence Livermore National Laboratories (LLNL) stress rupture testing program, carried out for the past 35 years. Deterministic as well as probabilistic sensitivities are examined.

Murthy, Pappu L. N.↗

NASA NTRS2007

Analog Radio-Frequency Interferences (RFI) Detectors for Microwave Radiometers

Microwave radiometers use radio spectrum dedicated to sensing the environment. As wireless communications and other active services proliferate, this allocated spectrum is nearly being crowded out. The potential result is corrupted satellite measurements of the weather, the climate, and the environment. We present an analog RFI detector for microwave radiometers intended to mitigate the above risks. The double detector (DD) for RFI detection includes a square-law diode detector with short integration time for measuring the total power out of the radiometer, followed by a second diode detector which acts as a higher-order statistical fourth-moment detector. See Figure 1 for block diagram of the system. This novel design which uses purely analog components at radio andlor intermediate frequencies allows the system to easily augment conventional radiometer architectures used in both airborne and space borne instruments. An equivalent high-speed digital design would add an impractical level of cost and complexity to radiometer designs using today's technology.

Knuble, Joseph J.↗

NASA NTRS2006

NASA Tech Briefs, July 2006

Topics covered include: Airport Remote Tower Sensor Systems; Implantable Wireless MEMS Sensors for Medical Uses; Embedded Sensors for Measuring Surface Regression; Coordinating an Autonomous Earth-Observing Sensorweb; Range-Measuring Video Sensors; Stability Enhancement of Polymeric Sensing Films Using Fillers; Sensors for Using Times of Flight to Measure Flow Velocities; Receiver Would Control Phasing of a Phased-Array Antenna; Modern Design of Resonant Edge-Slot Array Antennas; Carbon-Nanotube Schottky Diodes; Simplified Optics and Controls for Laser Communications; Coherent Detection of High-Rate Optical PPM Signals; Multichannel Phase and Power Detector; Using Satellite Data in Weather Forecasting: I; Using Dissimilarity Metrics to Identify Interesting Designs; X-Windows PVT Widget Class; Shuttle Data Center File-Processing Tool in Java; Statistical Evaluation of Utilization of the ISS; Nanotube Dispersions Made With Charged Surfactant; Aerogels for Thermal Insulation of Thermoelectric Devices; Low-Density, Creep-Resistant Single-Crystal Superalloys; Excitations for Rapidly Estimating Flight-Control Parameters; Estimation of Stability and Control Derivatives of an F-15; Tool for Coupling a Torque Wrench to a Round Cable Connector; Ultrasonically Actuated Tools for Abrading Rock Surfaces; Active Struts With Variable Spring Stiffness and Damping; Multiaxis, Lightweight, Computer-Controlled Exercise System; Dehydrating and Sterilizing Wastes Using Supercritical CO2; Alpha-Voltaic Sources Using Liquid Ga as Conversion Medium; Ice-Borehole Probe; Alpha-Voltaic Sources Using Diamond as Conversion Medium; White-Light Whispering-Gallery-Mode Optical Resonators; Controlling Attitude of a Solar-Sail Spacecraft Using Vanes; and Wire-Mesh-Based Sorber for Removing Contaminants from Air.

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