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DOE OSTI2023

A MeerKAT-meets-LOFAR study of Abell 1413: a moderately disturbed non-cool-core cluster hosting a ~500 kpc ‘mini’-halo

Many relaxed cool-core clusters host diffuse radio emission on scales of hundreds of kiloparsecs: mini-haloes. However, the mechanism responsible for generating them, as well as their connection with central active galactic nuclei, is elusive and many questions related to their physical properties and origins remain unanswered. This paper presents new radio observations of the galaxy cluster Abell 1413 performed with MeerKAT (L-band; 872 to 1712 MHz) and LOFAR HBA (120 to 168 MHz) as part of a statistical and homogeneous census of mini-haloes. Abell 1413 is unique among mini-halo clusters as it is a moderately disturbed non-cool-core cluster. Our study reveals an asymmetric mini-halo up to 584 kpc in size at 1283 MHz, twice as large as first reported at similar frequencies. The spectral index is flatter than previously reported, with an integrated value of α = −1.01 ± 0.06, shows significant spatial variation, and a tentative radial steepening. We studied the point-to-point X-ray/radio surface brightness correlation to investigate the thermal/non-thermal connection: our results show a strong connection between these components, with a superlinear slope of $b = 1.63^{+0.10}_{-0.10}$ at 1283 MHz and $b = 1.20^{+0.13}_{-0.11}$ at 145 MHz. We also explore the X-ray surface brightness/radio spectral index correlation, finding a slope of $b = 0.59^{+0.11}_{-0.11}$. Both investigations support the evidence of spectral steepening. Finally, in the context of understanding the particle acceleration mechanism, we present a simple theoretical model which demonstrates that hybrid scenarios – secondary electrons (re-)accelerated by turbulence – reproduce a superlinear correlation slope.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Numerical simulation of terahertz radiation by laser-driven plasma dipole oscillation

Laser-plasma interactions have many theoretical and technological applications. One is the use of coherently accelerated electrons to provide novel sources of THz radiation. Our research focuses on simulating the cross/self-interactions between two high intensity, ultra-short, counter propagating and detuned laser pulses and an initial neutral target for controlled ionization. Unlike our previous studies of laser-matter interaction over preformed plasma, we explore the injection and collision of laser pulses to induce background plasma driven by the self-guided laser wakefield mechanism, which is then used to perturb the plasma resulting in induced dipole oscillations leading to transverse radiation. Inducing a cylindrical spatial plasma column within the laser beam radius regime provides a stable, spatially localized plasma channel. The emitted radiation from the plasma dipole oscillation (PDO) will not be affected by surrounding plasma absorption, resulting in effective radiation distribution. Finally, results include 3D EM-PIC simulations and a comparison of the self- ionizing plasma against the preformed plasma to assess the efficiency of the mechanisms.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

NASA NTRS1992

Global electric field determination in the Earth's outer magnetosphere using charged particles

Although many properties of the Earth's magnetosphere have been measured and quantified in the past 30 years since it was discovered, one fundamental (for a zeroeth order magnetohydrodynamic (MHD) equilibrium) measurement was made infrequently and with poor spatial coverage: the global electric field. This oversight is in part due to the difficulty of measuring a plasma electric field, and in part due to the difficulty of measuring a plasma electric field, and in part due to the neglect of theorists. However, there is renewed interest in the convection electric field, since it has been realized that it is vital for understanding many aspects of the magnetosphere: the global MHD equilibrium, reconnection rates, Region 2 Birkeland currents, magnetosphere-ionosphere coupling, ring current and radiation belt transport, substorm injections, acceleration mechanisms, etc. Unfortunately the standard experimental methods have not been able to synthesize a global field (excepting the pioneering work of McIlwain's geostationary models), and we are left with an overly simplistic theoretical field, the Volland-Stern electric field mode. Again, single point measurements of the plasma pause were used to infer the appropriate amplitudes of the model, parameterized by Kp (Maynard & Chen, JGR 1975). Although this result was never intended to be the definitive electric field model, it has gone nearly unchanged for 15 years. However, the data sets being taken today require a great deal more accuracy than can be provided by the Volland-Stern model. Nor has the variability of the electric field shielding been properly addressed, although effects of penetrating magnetospheric electric fields has been seen in mid- and low-latitude ionospheric data sets. The growing interests in substorm dynamics also requires a much better assessment of the electric fields responsible for particle injections. Thus, we proposed and developed algorithms for extracting electric fields from particle data taken in the earth's magnetosphere. As a test of the effectiveness of these techniques, we analyzed data taken by the AMPTE/CCE spacecraft in equatorial orbit between 1984-1988. Some analytic tools had to be developed before construction of computer algorithms, and they are discussed.

Eastman, T.↗

NASA NTRS1992

Multispectral observations of the Jovian aurora

The upper atmospheres of the Earth and the outer planets form a screen on which precipitating charged particles, like the electron beam in a television, trace fleeting, but revealing patterns of visible, ultraviolet, infrared, and x ray emissions that offer valuable clues to processes occurring within the planetary magnetospheres. At Earth, years of in situ measurements, as well as ground based observations, have yielded a picture (still fuzzy) where the interaction of the solar wind with the magnetosphere of the Earth provides a complex path for the storage and release of energy during magnetic substorms; the ultimate manifestation of terrestrial auroral processes. More recent global imaging of substorm events from high above the Earth (greater than 3.5 R(sub e)) by Dynamics Explorer have made a unique contribution towards understanding the global and temporal evolution of such auroral events by providing a morphological perspective and by providing the crucial observational link that allows the separation of spatial and temporal variations inherent in the interpretation of in situ data. A similar role was played by the Hubble Space Telescope (HST) during the recent encounter of Ulysses with Jupiter in helping to define a new paradigm in Jovian auroral physics. The old paradigm portrayed Jupiter's magnetosphere as totally dominated by internal processes (i.e. Io related tori, heavy ions, etc.) where energetic heavy ion precipitation in the inner magnetosphere was solely responsible for the observed auroral phenomena. Ulysses and HST portray a more Earth-like paradigm where electron acceleration in the outer magnetosphere near the boundary with the solar wind plays a distinct role in the formation of auroral hot spots, yet energetic heavy ions also enter into the picture (similar to the role of the energetic ions from the terrestrial ring current during magnetic substorms). These heavy ions as a result of excitation during their transit through the atmosphere produce the x ray emissions observed in Roentgensatellit (ROSAT) x ray energy spectra.

Source record↗

NASA NTRS1997

Multistage Schemes with Multigrid for Euler and Navier-Strokes Equations: Components and Analysis

A class of explicit multistage time-stepping schemes with centered spatial differencing and multigrids are considered for the compressible Euler and Navier-Stokes equations. These schemes are the basis for a family of computer programs (flow codes with multigrid (FLOMG) series) currently used to solve a wide range of fluid dynamics problems, including internal and external flows. In this paper, the components of these multistage time-stepping schemes are defined, discussed, and in many cases analyzed to provide additional insight into their behavior. Special emphasis is given to numerical dissipation, stability of Runge-Kutta schemes, and the convergence acceleration techniques of multigrid and implicit residual smoothing. Both the Baldwin and Lomax algebraic equilibrium model and the Johnson and King one-half equation nonequilibrium model are used to establish turbulence closure. Implementation of these models is described.

Swanson, R. C.↗

NASA NTRS2010

A Transportable Gravity Gradiometer Based on Atom Interferometry

A transportable atom interferometer-based gravity gradiometer has been developed at JPL to carry out measurements of Earth's gravity field at ever finer spatial resolutions, and to facilitate high-resolution monitoring of temporal variations in the gravity field from ground- and flight-based platforms. Existing satellite-based gravity missions such as CHAMP and GRACE measure the gravity field via precise monitoring of the motion of the satellites; i.e. the satellites themselves function as test masses. JPL's quantum gravity gradiometer employs a quantum phase measurement technique, similar to that employed in atomic clocks, made possible by recent advances in laser cooling and manipulation of atoms. This measurement technique is based on atomwave interferometry, and individual laser-cooled atoms are used as drag-free test masses. The quantum gravity gradiometer employs two identical atom interferometers as precision accelerometers to measure the difference in gravitational acceleration between two points (Figure 1). By using the same lasers for the manipulation of atoms in both interferometers, the accelerometers have a common reference frame and non-inertial accelerations are effectively rejected as common mode noise in the differential measurement of the gravity gradient. As a result, the dual atom interferometer-based gravity gradiometer allows gravity measurements on a moving platform, while achieving the same long-term stability of the best atomic clocks. In the laboratory-based prototype (Figure 2), the cesium atoms used in each atom interferometer are initially collected and cooled in two separate magneto-optic traps (MOTs). Each MOT, consisting of three orthogonal pairs of counter-propagating laser beams centered on a quadrupole magnetic field, collects up to 10(exp 9) atoms. These atoms are then launched vertically as in an atom fountain by switching off the magnetic field and introducing a slight frequency shift between pairs of lasers to create a moving rest frame for the trapped atoms. While still in this moving-frame molasses, the laser frequencies are further detuned from the atomic resonance (while maintaining this relative frequency shift) to cool the atom cloud's temperature to 2 K or below, corresponding to an rms velocity of less than 2 cm/s. After launch, the cold atoms undergo further state and velocity selection to prepare for atom interferometry. The atom interferometers are then realized using laser-induced stimulated Raman transitions to perform the necessary manipulations of each atom, and the resulting interferometer phase is measured using laser-induced fluorescence for state-normalized detection. More than 20 laser beams with independent controls of frequency, phase, and intensity are required for this measurement sequence. This instrument can facilitate the study of Earth's gravitational field from surface and air vehicles, as well as from space by allowing gravity mapping from a low-cost, single spacecraft mission. In addition, the operation of atom interferometer-based instruments in space offers greater sensitivity than is possible in terrestrial instruments due to the much longer interrogation times available in the microgravity environment. A space-based quantum gravity gradiometer has the potential to achieve sensitivities similar to the GRACE mission at long spatial wavelengths, and will also have resolution similar to GOCE for measurement at shorter length scales.

Yu, Nan↗

NASA NTRS1999

Soot Aerosol Properties in Laminar Soot-Emitting Microgravity Nonpremixed Flames

The spatial distributions and morphological properties of the soot aerosol are examined experimentally in a series of 0-g laminar gas-jet nonpremixed flames. The methodology deploys round jet diffusion flames of nitrogen-diluted acetylene fuel burning in quiescent air at atmospheric pressure. Full-field laser-light extinction is utilized to determine transient soot spatial distributions within the flames. Thermophoretic sampling is employed in conjunction with transmission electron microscopy to define soot microstructure within the soot-emitting 0-g flames. The microgravity tests indicate that the 0-g flames attain a quasi-steady state roughly 0.7 s after ignition, and sustain their annular structure even beyond their luminous flame tip. The measured peak soot volume fractions show a complex dependence on burner exit conditions, and decrease in a nonlinear fashion with decreasing characteristic flow residence times. Fuel preheat by approximately 140 K appears to accelerate the formation of soot near the flame axis via enhanced fuel pyrolysis rates. The increased soot presence caused by the elevated fuel injection temperatures triggers higher flame radiative losses, which may account for the premature suppression of soot growth observed along the annular region of preheated-fuel flames. Electron micrographs of soot aggregates collected in 0-g reveal the presence of soot precursor particles near the symmetry axis at midflame height, The observations also verify that soot primary particle sizes are nearly uniform among aggregates present at the same flame location, but vary considerably with radius at a fixed distance from the burner. The maximum primary size in 0-g is found to be by 40% larger than in 1-g, under the same burner exit conditions. Estimates of the number concentration of primary particles and surface area of soot particulate phase per unit volume of the combustion gases are also made for selected in-flame locations.

Konsur, Bogdan↗

DOE OSTI2024

Subseasonal Variability of U.S. Coastal Sea Level from MJO and ENSO Teleconnection Interference

Abstract Climate variability affects sea levels as certain climate modes can accelerate or decelerate the rising sea level trend, but subseasonal variability of coastal sea levels is underexplored. This study is the first to investigate how remote tropical forcing from the MJO and ENSO impact subseasonal U.S. coastal sea level variability. Here, composite analyses using tide gauge data from six coastal regions along the U.S. East and West Coasts reveal influences on sea level anomalies from both the MJO and ENSO. Tropical MJO deep convection forces a signal that results in U.S. coastal sea level anomalies that vary based on MJO phase. Further, ENSO is shown to modulate both the MJO sea level response and background state of the teleconnections. The sea level anomalies can be significantly enhanced or weakened by the MJO-associated anomaly along the East Coast due to constructive or destructive interference with the ENSO-associated anomaly, respectively. The West Coast anomaly is found to be dominated by ENSO. We examine physical mechanisms by which MJO and ENSO teleconnections impact coastal sea levels and find consistent relationships between low-level winds and sea level pressure that are spatially varying drivers of the variability. Two case studies reveal how MJO and ENSO teleconnection interference played a role in notable coastal flooding events. Much of the focus on sea level rise concerns the long-term trend associated with anthropogenic warming, but on shorter time scales, we find subseasonal climate variability has the potential to exacerbate the regional coastal flooding impacts. Significance Statement Coastal flooding due to sea level rise is increasingly threatening communities, but natural fluctuations of coastal sea levels can exacerbate the human-caused sea level rise trend. This study assesses the role of tropical influences on coastal subseasonal (2 weeks–3 months) sea level heights. Further, we explore the mechanisms responsible, particularly for constructive interference of signals contributing to coastal flooding events. Subseasonal signals amplify or suppress the lower-frequency signals, resulting in higher or lower sea level heights than those expected from known climate modes (e.g., ENSO). Low-level onshore winds and reduced sea level pressure connected to the tropical phenomena are shown to be indicators of increased U.S. coastal sea levels, and vice versa. Two case studies reveal how MJO and ENSO teleconnection interference played a role in notable coastal flooding events. Much of the focus on sea level rise concerns the long-term trend associated with anthropogenic warming, but on shorter time scales, we find subseasonal climate variability has the potential to exacerbate the regional coastal flooding impacts.

Meteorology & Atmospheric Sciences↗

DOE OSTI2023

Accelerating Quantum Materials Development with Advances in Transmission Electron Microscopy

Quantum materials are driving a technology revolution in sensing, communication, and computing, while simultaneously testing many core theories of the past century. Materials such as topological insulators, complex oxides, superconductors, quantum dots, color center-hosting semiconductors, and other types of strongly correlated materials can exhibit exotic properties such as edge conductivity, multiferroicity, magnetoresistance, superconductivity, single photon emission, and optical-spin locking. These emergent properties arise and depend strongly on the material’s detailed atomic-scale structure, including atomic defects, dopants, and lattice stacking. In this review, we describe how progress in the field of electron microscopy (EM), including in situ and in operando EM, can accelerate advances in quantum materials and quantum excitations. We begin by describing fundamental EM principles and operation modes. We then discuss various EM methods such as (i) EM spectroscopies, including electron energy loss spectroscopy (EELS), cathodoluminescence (CL), and electron energy gain spectroscopy (EEGS); (ii) four-dimensional scanning transmission electron microscopy (4D-STEM); (iii) dynamic and ultrafast EM (UEM); (iv) complementary ultrafast spectroscopies (UED, XFEL); and (v) atomic electron tomography (AET). We describe how these methods could inform structure–function relations in quantum materials down to the picometer scale and femtosecond time resolution, and how they enable precision positioning of atomic defects and high-resolution manipulation of quantum materials. For each method, we also describe existing limitations to solve open quantum mechanical questions, and how they might be addressed to accelerate progress. Among numerous notable results, our review highlights how EM is enabling identification of the 3D structure of quantum defects; measuring reversible and metastable dynamics of quantum excitations; mapping exciton states and single photon emission; measuring nanoscale thermal transport and coupled excitation dynamics; and measuring the internal electric field and charge density distribution of quantum heterointerfaces- all at the quantum materials’ intrinsic atomic and near atomic-length scale. Finally, we conclude by describing open challenges for the future, including achieving stable sample holders for ultralow temperature (below 10K) atomic-scale spatial resolution, stable spectrometers that enable meV energy resolution, and high-resolution, dynamic mapping of magnetic and spin fields. With atomic manipulation and ultrafast characterization enabled by EM, quantum materials will be poised to integrate into many of the sustainable and energy-efficient technologies needed for the 21st century.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2024

Modeling Electric Vehicle Charging Load Using Origin-Destination Data

The accelerating adoption of electric vehicles (EVs) poses challenges to the power grid, necessitating precise representation of mobility patterns for effective infrastructure upgrades. Traditional simulation-based charging demand estimation faces limitations in generating trip chains reflective of actual travel patterns without complex network modeling. Hence, an innovative agent-based trip chain generation model is introduced to overcome these challenges. Drawing from the National Household Travel Survey (NHTS) and the NextGen NHTS origin-destination add-on data for Clarke County, Georgia, this study proposes a simulation method capturing both temporal and spatial mobility patterns without relying on extensive network topology data. The resulting trip chains predict EV charging load at the Census Block Group level, validated with a 1.03 correlation to actual trip counts, affirming their reflective accuracy. Two charging scenarios, residential-only and charging-everywhere, reveal distinct demand profiles. The charging-everywhere scenario aligns closely with the trip profile, while the residential-only scenario exhibits an afternoon peak slightly surpassing the former. This study contributes a data-driven charging demand estimation methodology, offering critical insights for grid resiliency planning amid the evolving landscape of EV adoption.

Pan, Melrose↗

DOE OSTI2026

Single-cell and spatial omics in plants: from cellular atlases to regulatory mechanisms

Single-cell RNA sequencing (scRNA-seq) has transformed transcriptomic studies by enabling gene expression profiling at the resolution of individual cells within and across a broad range of tissue types, revealing cellular heterogeneity that is obscured in bulk tissue transcriptomes. Over the past decade, improvements in microfluidics and library preparation have drastically increased throughput, allowing tens of thousands of cells to be assayed in a single experiment. Although initially developed in animal systems, scRNA-seq has rapidly emerged as a powerful and widely adopted approach in plant biology. Beyond transcriptomics, the integration of single-cell data with chromatin accessibility, proteomics, metabolomics, and spatial omics is enabling a system-level understanding of plant gene regulation and cellular organization. Network-based analytical frameworks further support the reconstruction of gene regulatory networks and the interpretation of complex single-cell data. In this review, we summarize the current technological landscape of plant single-cell studies, discuss key experimental and analytical challenges, and review emerging strategies for validating single-cell discoveries. We also discuss future directions in applying single-cell technologies to woody perennials plants and bioenergy-relevant crops, emphasizing their potential to accelerate the discovery of cell type-specific regulatory mechanisms underlying growth, stress resilience, and biomass production.

Li, Miaomiao [ORNL] (ORCID:0000000321326168)↗

NASA NTRS1982

Spatial and temporal evolution of soft and hard X-ray emission in a solar flare

Hard X-ray burst spectrometer and imaging spectrometer data are used to study the spatial and temporal characteristics of the 3.5-30.0 keV emission in an Apr. 10, 1980 solar flare. It is found that: (1) continuous energy release is needed to sustain the increase of the emission through the flare's rising phase, before and after the impulsive phase in hard X-rays, and the release is characterized by the production of 50 million-150 million K thermal regions within the flare loop structures; (2) the observational parameters which characterize the impulsive burst indicate that it is probably associated with nonthermal processes, such as particle acceleration; and (3) the continuous energy release is associated with strong chromospheric evaporation, in view of spectral line behavior. Both particle acceleration and chromospheric evaporation stop just before flare maximum, and the subsequent evolution is probably governed by the radiative cooling of the flare plasma.

Machado, M. E.↗

NASA NTRS1989

Dayside observations of thermal-ion upwellings at 800-km altitude - An ionospheric signature of the cleft ion fountain

There is a growing body of evidence that energetic heavy ions observed at one or more earth radii over the polar cap originate from the dayside ionosphere in the vicinity of the dayside cleft. The ions, consisting mostly of O(+), are often characterized by conic pitch-angle distributions, suggesting that they have undergone acceleration transverse to geomagnetic field lines. This process of ion injection from a latitudinally localized source region in the dayside auroral oval followed by dispersal throughout the entire polar cap has been called the 'cleft ion fountain'. Here, results are presented of upward thermal-ion flows measured at 800-km altitude in the dayside polar ionosphere by the Hilat satellite. The characteristics of these thermal-ion upwellings (TIU) are described and shown to be closely associated with the cleft ion fountain. It is shown that TIU events are latitudinally confined and spatially collocated with cleft electron precipitation, upward field-aligned currents, and velocity gradients in magnetospheric convection.

Tsunoda, R. T.↗

NASA NTRS1999

Particle Segregation in Collisional Shearing Flows

The size segregation of flowing or shaken grains is a commonly observed phenomenon in industrial processes and in nature. In systems that do not involve much agitation of the grains, several mechanisms that involve gravity have been identified as leading to such segregation. In highly agitated flows, there is a mechanism independent of gravity that is available to drive separation of different grains. This is associated with spatial gradients in the energy of their velocity fluctuations. Because collisions between grains inevitably dissipate energy, collisional granular shear flows are usually of limited extent in the direction transverse to the flow. One consequence of this is that shear flows are strongly influenced by their boundaries. Because grains, on average, slip relative to boundaries, a bumpy or frictional boundary can convert slip energy into fluctuation energy. However, because each collision between a grain and the boundary dissipates fluctuation energy, there is a competition between production and dissipation. In principle, it is possible to design the geometry of the boundary - for example, the size and spacing of the bumps - so that the boundary either produces or dissipates fluctuation energy. This permits the control of the component of the spatial gradient of the fluctuation energy that is normal to the boundary. The gradients in fluctuation energy established by such boundaries may be exploited to drive the separation by size or other properties in a binary mixture of spherical grains. Microgravity makes the visual observations possible by permitting us to employ moderate rates of shear. On earth, the effects of gravity can be minimized by shearing so rapidly that the particle pressure overwhelms gravity. However, in this event, separation takes place too rapidly for visual observation, buoyancy and/or condensation associated with the centripetal acceleration must be accounted for, and the particles can be severely damaged. Because, in the absence of gravity, the only available time scale is proportional to the speed of the moving boundary, this speed can be made arbitrarily slow to permit observations and to avoid particle damage, without altering the phenomenon under study. The primary goal of this research is to carry out a physical experiment in which particle segregation is induced and maintained in a collisional flow of a binary mixture of two different types of spheres.

Jenkins, J. T.↗

DOE OSTI2024

ThermoPore: Predicting part porosity based on thermal images using deep learning

Part qualification is often a critical and labor-intensive process in additive manufacturing, particularly in the detection of defects such as porosity, which stands to benefit significantly from advancements in machine learning. We present a deep learning approach for quantifying and localizing ex-situ porosity within Laser Powder Bed Fusion fabricated samples utilizing in-situ thermal image monitoring data. Our goal is to build the real time porosity map of parts based on thermal images acquired during the build. The quantification task builds upon the established Convolutional Neural Network model architecture to predict pore count and the localization task leverages the spatial and temporal attention mechanisms of the novel Video Vision Transformer model to indicate areas of expected porosity. Our model for porosity quantification achieved a R 2 score of 0.57 and our model for porosity localization produced an average Intersection over Union (IoU) score of 0.32 and a maximum of 1.0. This work is setting the foundations of part porosity “Digital Twins” based on additive manufacturing monitoring data and can be applied downstream to reduce time-intensive post-inspection and testing activities during part qualification and certification. In addition, we seek to accelerate the acquisition of crucial insights normally only available through ex-situ part evaluation by means of machine learning analysis of in-situ process monitoring data.

Deep learning↗

NASA NTRS1978

The kinetic effects of Alfven wave pressure in the solar wind

The results of a kinetic model for the radial evolution of the proton component of the solar wind in the presence of Alfven waves are presented. The calculation is based on general quasi-linear equations developed to describe the temporal and spatial evolution of the ion distribution functions of a multispecies plasma in presence of waves, using a short wavelength expansion. These equations include new wave-particle interaction terms arising from temporal and spatial inhomogeneities in the plasma. Numerical solutions are obtained of these equations specialized to the case of Alfven waves in a spherically symmetric solar wind. The Alfven wave effects on the proton distribution function vary strongly in velocity space. Protons with small transverse velocities are primarily decelerated with respect to the wave rest frame. This deceleration becomes less important with increasing transverse velocity, as wave induced diffusion to larger transverse velocity becomes the dominant effect. The competition of these effects results in interesting distortions of evolving proton distribution functions which give rise the wave acceleration well known from fluid theory.

Goodrich, C. C.↗

NASA NTRS1996

Results of Detailed Modeling of the Narrow-Line Region of Seyfert Galaxies

We present model line profiles of [O II] lambda3727, [Ne III] lambda3869, [O I] lambda5007, [Fe VII] lambda6087, [Fe X] lambda6374, [O I] lambda6300, H(alpha) lambda6563, and [S 2] lambda6731. The profiles presented here illustrate explicitly the pronounced effects that collisional de-excitation, and that spatial variations in both the ionization parameter and cloud column density, have on Narrow-Line Region (NLR) model profiles. The above effects were included only qualitatively in a previous analytical treatment by Moore and Cohen. By making a direct correspondence between these model profiles and the analytical model profiles of Moore and Cohen, and by comparing with the observed profiles presented in a companion paper and also with those presented elsewhere in the literature, we strengthen some of the conclusions of Moore and Cohen. Most notably, we argue for constant ionization parameter, uniformly accelerated outflow of clouds that are individually stratified in ionization, and the interpretation of emission-line width correlations with ionization potential as a column density effect. For comparison with previous observational studies, such as our own in a companion paper, we also calculate profile parameters for some of the models, and we present and discuss the resulting line width correlations with critical density (n(sub cr)) and Ionization Potential (IP). Because the models we favor are those that produce extended profile wings as observed in high spectral resolution studies, the line width correlations of our favoured models are of particular interest. Line width correlations with n(sub cr) and/or IP result only if the width parameter is more sensitive to extended profile wings than is the Full Width at Half-Maximum (FWHM). Correlations between FWHM and n(sub cr) and/or IP result only after convolving the model profiles with a broad instrumental profile that simulates the lower spectral resolution used in early observational studies. The model in agreement with the greatest number of observational considerations has electron density decreasing outward from n(sub e) approx. equals 10(exp 6)/cu cm to n(sub e) approx. equals 10(exp 2)/cu cm and, due to collisional de-excitation effects in the lowest velocity clouds, it generates broad flat-topped profile peaks in the lines of lowest critical density (e.g., [O II] lambda3727 and [S II] lambda(lambda)6716, 6731). Because the observed profile peaks of both low and high critical density lines are often very similar, our favored model requires a contribution to NLR emission-line spectra from low-velocity, low-density, and low-ionization gas not included in the model NLR.

Moore, David↗

DOE OSTI2025

Integrated structural model of the palladin–actin complex using XL ‐ MS , docking, NMR , and SAXS

Abstract Palladin is an actin‐binding protein that accelerates actin polymerization and is linked to the metastasis of several types of cancer. Previously, three lysine residues in an immunoglobulin‐like domain of palladin have been identified as essential for actin binding. However, it is still unknown where palladin binds to F‐actin. Evidence that palladin binds to the sides of actin filaments to facilitate branching is supported by our previous study showing that palladin was able to compensate for Arp2/3 in the formation of Listeria actin comet tails. Here, we used chemical crosslinking to covalently link palladin and F‐actin residues based on spatial proximity. Samples were then enzymatically digested, separated by liquid chromatography, and analyzed by tandem mass spectrometry. Peptides containing the crosslinks and specific residues involved were then identified for input to the HADDOCK docking server to model the most likely binding conformation. Small‐angle x‐ray scattering was used to provide further insight into palladin flexibility and the binding interface, and NMR spectra identified potential interactions between palladin's Ig domains. Our final structural model of the F‐actin:palladin complex revealed how palladin interacts with and stabilizes F‐actin at the interface between two actin monomers. Three actin residues that were identified in this study also appear commonly in the actin‐binding interface with other proteins such as myotilin, myosin, and tropomodulin. An accurate structural representation of the complex between palladin and actin extends our understanding of palladin's role in promoting cancer metastasis through the regulation of actin dynamics.

Sargent, Rachel [Department of Chemistry and Bioch↗