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DOE OSTI2016

TH-E-209-01: Fluoroscopic Dose Monitoring and Patient Follow-Up Program at Massachusetts General Hospital

Radiation dose monitoring solutions have opened up new opportunities for medical physicists to be more involved in modern clinical radiology practices. In particular, with the help of comprehensive radiation dose data, data-driven protocol management and informed case follow up are now feasible. Significant challenges remain however and the problems faced by medical physicists are highly heterogeneous. Imaging systems from multiple vendors and a wide range of vintages co-exist in the same department and employ data communication protocols that are not fully standardized or implemented making harmonization complex. Many different solutions for radiation dose monitoring have been implemented by imaging facilities over the past few years. Such systems are based on commercial software, home-grown IT solutions, manual PACS data dumping, etc., and diverse pathways can be used to bring the data to impact clinical practice. The speakers will share their experiences with creating or tailoring radiation dose monitoring/management systems and procedures over the past few years, which vary significantly in design and scope. Topics to cover: (1) fluoroscopic dose monitoring and high radiation event handling from a large academic hospital; (2) dose monitoring and protocol optimization in pediatric radiology; and (3) development of a home-grown IT solution and dose data analysis framework. Learning Objectives: Describe the scope and range of radiation dose monitoring and protocol management in a modern radiology practice Review examples of data available from a variety of systems and how it managed and conveyed. Reflect on the role of the physicist in radiation dose awareness.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2016

TH-E-209-02: Dose Monitoring and Protocol Optimization: The Pediatric Perspective

60 APPLIED LIFE SCIENCES↗

DOE OSTI2023

hIPPYlib-MUQ: A Bayesian Inference Software Framework for Integration of Data with Complex Predictive Models under Uncertainty

Bayesian inference provides a systematic framework for integration of data with mathematical models to quantify the uncertainty in the solution of the inverse problem. However, the solution of Bayesian inverse problems governed by complex forward models described by partial differential equations (PDEs) remains prohibitive with black-box Markov chain Monte Carlo (MCMC) methods. We present hIPPYlib-MUQ, an extensible and scalable software framework that contains implementations of state-of-the art algorithms aimed to overcome the challenges of high-dimensional, PDE-constrained Bayesian inverse problems. These algorithms accelerate MCMC sampling by exploiting the geometry and intrinsic low-dimensionality of parameter space via derivative information and low rank approximation. The software integrates two complementary open-source software packages, hIPPYlib and MUQ. hIPPYlib solves PDE-constrained inverse problems using automatically-generated adjoint-based derivatives, but it lacks full Bayesian capabilities. MUQ provides a spectrum of powerful Bayesian inversion models and algorithms, but expects forward models to come equipped with gradients and Hessians to permit large-scale solution. By combining these two complementary libraries, we created a robust, scalable, and efficient software framework that realizes the benefits of each and allows us to tackle complex large-scale Bayesian inverse problems across a broad spectrum of scientific and engineering disciplines. To illustrate the capabilities of hIPPYlib-MUQ, we present a comparison of a number of MCMC methods available in the integrated software on several high-dimensional Bayesian inverse problems. These include problems characterized by both linear and nonlinear PDEs, various noise models, and different parameter dimensions. The results demonstrate that large (~ 50×) speedups over conventional black box and gradient-based MCMC algorithms can be obtained by exploiting Hessian information (from the log-posterior), underscoring the power of the integrated hIPPYlib-MUQ framework.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

A Reference Implementation for a Quantum Message Passing Interface

Practical applications of quantum computing are currently limited by the number of qubits that can be set with reasonable fidelities for each system. Therefore, a distributed quantum computing system with multiple quantum computers coherently connected is highly demanding. To realize the internode communication of quantum information, the software interface, Quantum Message Passing Interface (QMPI), leveraging the framework built for classical MPI but taking advantage of quantum teleportation to communicate between different quantum nodes was proposed. In this project, we develop the QMPI with point-to-point and collective operations in Qiskit and characterize its performance by demonstrating the application implementations. Moreover, we developed a new technique for optimizing collective communication of the distributed quantum programs with Multi-Controlled Toffoli gates. This technique beats the state-of-the-art in terms of fidelity and the number of remote EPR pairs consumed in both simulations and experiments.

Shi, Yue↗

DOE OSTI2017

SIDSIM (Sub-Interval Distribution-function in Simulation) [SWR-17-22]

Time-series simulation is a technique used to estimate the energy delivery of a power generation system with output that changes under changing conditions. Such variable resources include photovoltaic energy systems that experience different levels of sunlight or wind farms with changing wind patterns. As distributed generation from these variable resources continues to flourish, having improved software tools to accurately measure, model, and estimate phenomena of interest to grid integration, in addition to energy output, will be crucial for safeguarding smooth integration and operation of these energy systems. Currently, time-series simulations assume conditions and power output are constant over the duration of a time-step (steady-state assumption). NREL researchers improve the accuracy with a new simulation software called SIDSIM (Sub-Interval Distribution Simulation) that replaces this steady value (solar or wind resource) with a distribution function that has a maximum value, a minimum value, and a shape to the curve within each time-step. The distribution function used for modeling varying values in the SIDSIM software is a novel equation and presents advantageous new benefits over the conventional methods. The first advantage comes in the ability to determine maximum instantaneous power within a time-step. This enables better protection of a system from overcurrent issues and it also allows for better forecasting and reservation of transmission capacity; such capabilities are essential for energy system integration. Second, a distribution function helps to determine the amount of energy loss due to “clipping” in cases where the photovoltaic direct current (DC) system capacity exceeds the inverter capacity, the AC interconnect capacity, or any other limiting component or threshold value. It improves estimates of battery throughput by allowing both charge and discharge of a battery within the duration of a time-step. Third, it provides a more refined estimate of utility-bill impacts by considering the delivered power may be higher than the site load or lower than the regular average power estimates that are made using a quasi-steady-state assumption. SEE ALSO OSTI ID 1,361,018

Walker, Andy↗

DOE OSTI2024

pnnl/LAP

A software framework to study, from the performance and energy perspective, the efficacy of GPU-resident parallel Conjugate Gradient (CG) linear solver with different preconditioner options, including Gauss-Seidel, Jacobi, and incomplete Cholesky. We also propose a novel GPU-based preconditioner, in which the triangular solves are approximated by an iterative process

Swirydowicz, Kasia↗

DOE OSTI2018

Mapping Soil Cation‐Exchange Capacity using Bayesian Modeling and Proximal Sensors at the Field Scale

Core Ideas A Bayesian inference approach (INLA‐SPDE) was used to map topsoil and subsoil CEC. DEM, gamma‐ray spectrometer and EM induction data were combined to map CEC. Posterior marginal distributions of the model parameters and responses were estimated. Gamma‐ray data performed best in the topsoil, followed by DUALEM421S and elevation. Elevation data performed best in the subsoil, followed by gamma‐ray and DUALEM421S. Cation exchange capacity (CEC) affects soil fertility, acidity, and structural resilience. This is particularly the case in sugarcane growing areas of Australia because the soil there is sandy (>60%), strongly acidic (pH < 5.5), and strongly sodic (exchangeable sodium percentage [ESP] > 15%). Unfortunately, obtaining information on CEC at the field extent is time‐consuming and expensive. Here, we used a digital soil mapping approach to add value to limited (40) topsoil (0–0.3 m) and subsoil (0.6–0.9 m) CEC information. We first collected proximally sensed ancillary data from three sources, including a digital elevation model (DEM), γ‐ray (γ‐ray) spectrometer (RS700) and electromagnetic (EM) induction instruments. We then use a Bayesian inference approach (Integrated Nested Laplace Approximation with Stochastic Partial Differential Equation, INLA‐SPDE) implemented in R software to model the CEC and ancillary data. Accuracy (RMSE), bias (ME), and concordance (Lin's) of models were also generated from the different sources of ancillary data, either in combination or alone. We concluded, overall, that the INLA–SPDE approach could provide estimations of the posterior marginal distributions of the model parameters as well as the model responses as reported by other researchers. We also concluded that using the ancillary data sources in combination was most accurate (e.g., RMSE = 0.72) to predict CEC, least biased (e.g., ME = 0.07) and had the highest concordance (e.g., Lin's = 0.69) in both the topsoil and subsoil than using the ancillary data alone. The best ancillary data, when used alone for mapping CEC in the topsoil, was γ‐ray spectrometry, followed by EM data and elevation. For subsoil CEC, it was elevation, followed by γ‐ray spectrometry and then soil electrical conductivity (EC a ) data. The maps of the credibility interval (CI) indicated that better predictions were achieved in the topsoil and indicated where improvements in prediction could be achieved in the subsoil.

Li, Nan↗

DOE OSTI2018

Innovative Technologies for Optical Detection of Stress Corrosion Cracks

Stress corrosion cracks (SCC) represent a major concern for the structural integrity of engineered metal structures. In hazardous or restricted-access environments, remote detection of corrosion or SCC frequently relies on visual methods; however, with standard VT-1 visual inspection techniques, probabilities of SCC detection are low. Here, we develop and evaluate an improved optical sensor for SCC in restricted access-environments by combining a robotically controlled camera/fiber-optic based probe with software-based super-resolution imaging (SRI) techniques to increase image quality and detection of SCC. SRI techniques combine multiple images taken at different viewing angles, locations, or rotations, to produce a single higher- resolution composite image. We have created and tested an imaging system and algorithms for combining optimized, controlled camera movements and super- resolution imaging, improving SCC detection probabilities, and potentially revolutionizing techniques for remote visual inspections of any type.

36 MATERIALS SCIENCE↗

DOE OSTI2024

Using Likwid and Byfl to Benchmark Hardware Performance [Poster]

Benchmark Study conducted focusing on CPU and program performance analysis. Performance data gathered using 2 different programs and comparisons made based on performance. After comparisons are made, conclusions can be drawn and improvements are made upon hardware and software.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2017

Grid Stability Awareness System (GSAS) (Final Scientific/Technical Report)

The project team developed a software suite named Grid Stability Awareness System (GSAS) for power system near real-time stability monitoring and analysis based on synchrophasor measurement. The software suite consists of five analytical tools: an oscillation monitoring tool, a voltage stability monitoring tool, a transient instability monitoring tool, an angle difference monitoring tool, and an event detection tool. These tools have been integrated into one framework to provide power grid operators with both real-time or near real-time stability status of a power grid and historical information about system stability status. These tools are being considered for real-time use in the operation environment.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2020

Spectral Effects in Albedo and Rearside Irradiance Measurment for Bifacial Performance Estimation: Preprint

Albedo data are essential for accurate prediction of bifacial PV module performance. However, spectral response mismatch between PV modules and irradiance sensors used in albedometers can limit the accuracy of performance predictions. In order to provide quantitative assessment of this effect, we investigate via simulation the differences in spectrally responsive albedo measured with thermopile pyranometers and crystallinesilicon PV reference cells in comparison to a representative crystalline-silicon bifacial PV module for nine different representative ground surface materials. Calculations are performed using simulated solar spectra together with catalogued spectral reflectivity data distributed with the SMARTS simulation software. For the specific materials considered, the results show that albedo measurement using thermopile pyranometers could over or under-estimate the ground-reflected radiation usable by a bifacial PV module by up to 10%, versus only approximately 4% total range of variation for a PV reference cell.

Albedo↗

DOE OSTI2020

ISOCS-based Extended In Situ Gamma Spectrometry Services Tool SuperISOCS for Waste Measurements - 20275

Canberra's In Situ Object Counting System (ISOCS) is an established tool used for gamma spectrometry. It allows physical representation of complex geometries and mathematical calculation of the calibration function while avoiding the need for radioisotope standards. ISOCS provides a large range of templates to generate the geometry for most nuclear waste components in nuclear facilities. Nonetheless, there are some complex geometries where the accuracy attainable is limited by the conventional ISOCS templates. An ISOCS-based extended in-situ Gamma Spectrometry service tool has been developed, based on the so-called SuperISOCS (SISOCS) software. This tool was developed to generate the most complex geometries. The principle of geometry construction is based on the composition of 8 different primitive geometries. The primitive object is able to be cut and to change a part of an object. An object is able to overlap to another one to form a more complex object. These functions refine the modelled geometry compared to the real objects and decrease the measurement systematic error because they allow the mathematical model to represent the real-life geometry more faithfully through reducing the approximations and simplifications that need to be made The algorithm of SISOCS is the same as that of standard ISOCS. A set of calculations was done in comparison with MCNP efficiency calculation and SISOCS results. 80 different models were compared between SISOCS and MCNP, with added 30 cases compared between ISOCS and SISOCS. The average differences were less than 2%, for all energy's efficiency calculations. In this paper we illustrate the benefits that this new tool can provide, in terms of improved accuracy for complex realistic geometries, through simulation of some example scenarios. Furthermore, we demonstrate, through SISOCS modelling of the real object data test, the comparison between SISOCS to ISOCS calculations for the same geometry. This paper describes the added functions that are easily employed using SISOCS. Our results show the potential application and benefit of this technique for real waste assay projects and the way to integrate the tool into the waste assay systems. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2017

Comparison of Thermal Diffusivity Degradation of Irradiated Zirlo and SiC-SiC Composite

Zirlo (Zircaloy cladding material from Westinghouse) has been widely used as the fuel cladding material in Light Water Reactors because of its high melting point, low susceptibility to corrosion, good thermal and mechanical shock resistance, and low degradation of mechanical properties under irradiation. But as Zirlo reacts with water at high temperature, which can trigger serious accidents, efforts have been made to explore better candidates to replace Zirlo in the water-cooled reactors. SiC-SiC composite is considered as one of the most viable options due to its comparable mechanical performances and corrosion resistance. However, one of the most important properties, thermal diffusivities of both Zirlo and SiC-SiC composite, and their degradation after irradiation, are not well known yet. Ion-irradiated samples are used to study the thermal property degradation caused by irradiation instead of the neutron-irradiated ones due to the significantly lower radioactivity. The microstructural damage is estimated from the software simulation SRIM/TRIM based on the energy and fluence of the ion, and the target material, and represented by DPA (displacement by atom). Different from neutron-irradiated samples, the damaged layer of ion-irradiated samples is only a few to a few tens of micrometers thick, and the damage is depth dependent. It is impossible to directly measure the bulk property change, and a microscale measurement technique is necessary. Laser-based photothermal reflectance technique is one of the ideal methods to measure local thermal conductivity and diffusivity with high spatial resolution. The main principle of this technique is to heat the solid sample using an intensity-modulated laser, and scan the sample with a constant intensity continuous-wave (CW) laser to detect the thermal wave propagation. On bulk, isotropic material, if the heating laser intensity is modulated as a sine wave, thermal diffusivity of the sample can be derived from the phase lag of the thermal wave, scan distance and modulation frequency in a straight forward manner. By using more specific analytical models, thermal conductivity and diffusivity in complicated cases, such as layered structure materials, composite materials, and/or anisotropic materials, are measurable as well. In this work, thermal diffusivity of the light damage layer of the post-irradiation Zirlo and SiC-SiC composite are measured and compared. The Zirlo sample is irradiated by Ni{sup 9+} ion, and SiC-SiC composite material is irradiated by Si{sup 7+} ion. The peak DPA of both sample is similar as ∼10. For ion-irradiated materials, DPA is known to increase with depth before it reaches the peak, and then sharply drop to zero. In term of light damage layer in this manuscript, we mean by the layer with a DPA smaller than 5% maximum value. In this layer DPA increases slowly and smoothly with depth, and the structure and thus thermal properties are more spatially uniform. For the SiC-SiC composite, the measurements are separately conducted on fibers along radial or axial direction, and on the matrix. Our measurement results show that with similar microstructural damage, thermal diffusivity of matrix SiC reduces more significantly than that of Zirlo. For fiber SiC that has a much lower thermal diffusivity than the matrix SiC before irradiation, the post-irradiation effect on thermal diffusivity is not obvious.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2024

Evolution of the SLATE linear algebra library

SLATE (Software for Linear Algebra Targeting Exascale) is a distributed, dense linear algebra library targeting both CPU-only and GPU-accelerated systems, developed over the course of the Exascale Computing Project (ECP). While it began with several documents setting out its initial design, significant design changes occurred throughout its development. In some cases, these were anticipated: an early version used a simple consistency flag that was later replaced with a full-featured consistency protocol. In other cases, performance limitations and software and hardware changes prompted a redesign. Sequential communication tasks were parallelized; host-to-host MPI calls were replaced with GPU device-to-device MPI calls; more advanced algorithms such as Communication Avoiding LU and the Random Butterfly Transform (RBT) were introduced. Early choices that turned out to be cumbersome, error prone, or inflexible have been replaced with simpler, more intuitive, or more flexible designs. Applications have been a driving force, prompting a lighter weight queue class, nonuniform tile sizes, and more flexible MPI process grids. Of paramount importance has been building a portable library that works across several different GPU architectures – AMD, Intel, and NVIDIA – while keeping a clean and maintainable codebase. Here we explore the evolving design choices and their effects, both in terms of performance and software sustainability.

Gates, Mark↗

DOE OSTI2018

Computational Modeling of Hydraulic Properties of a Sheared Single Rock Fracture

Flow through a single mechanically sheared Marcellus shale fracture was investigated computationally and experimentally. To provide a better understanding of the variation of hydraulic and geometrical characteristics of a fracture subjected to shearing, coupled shear flow tests on the fracture for four shearing displacement steps under constant normal stress were performed. At the end of each shearing step, computed tomography (CT) scans with resolution 26.8 μm were obtained and the corresponding fracture geometries were evaluated. The CT images were used to generate full aperture maps of the fracture configuration. In addition, average aperture maps were also created by averaging the full-resolution data over 10 × 10 pixels, smoothing out fine structural details. Computational modeling of water flow through the fractures at different shearing steps was performed using a modified local cubic law approach and the 3D full Navier–Stokes equations with the use of the ANSYS-Fluent software. Both the average aperture maps and full maps were used in these simulations. The experimental pressure drops of the fracture at shearing step 1, which has very small apertures, poorly matched the numerical results, quite likely because the fracture structure was inadequately captured by the scanning resolution. Shearing typically increased the aperture height of the fracture, whose features were then better captured by the CT scan. Good agreement between the experimental data and the numerical results of the full map for shearing step 2 was observed. The simulations were performed for both full and average aperture maps, and the effects of scan resolution and surface roughness on the accuracy of the results were studied. The modified local cubic law and full Navier–Stokes simulations of the averaged map fracture were found to be in good agreement. It was conjectured that this was because the nonlinear losses were insignificant for the smoothed out averaged map fracture. Similar comparisons with those of the full map showed agreement in trends, but there were some quantitative differences. The averaged fracture map simulations also predicted lower pressure drops compared to the full map, particularly for high flow rates. These differences were due to the fine-scale geometrical complexity (surface roughness) of fracture geometry that affects the fluid flow in the fracture. In conclusion, an improved cubic law model was also proposed, and its accuracy was verified by comparing its predictions with those of the Navier–Stokes simulations.

58 GEOSCIENCES↗

DOE OSTI2022

Evolution of HEP Processing Frameworks

HEP data-processing software must support the disparate physics needs of many experiments. For both collider and neutrino environments, HEP experiments typically use data-processing frameworks to manage the computational complexities of their large-scale data processing needs. Data-processing frameworks are being faced with new challenges this decade. The computing landscape has changed from the past three decades of homogeneous single-core x86 batch jobs running on grid sites. Frameworks must now work on a heterogeneous mixture of different platforms: multi-core machines, different CPU architectures, and computational accelerators; and different computing sites: grid, cloud, and high-performance computing. We describe these challenges in more detail and how frameworks may confront them. Given their historic success, frameworks will continue to be critical software systems that enable HEP experiments to meet their computing needs. Frameworks have weathered computing revolutions in the past; they will do so again with support from the HEP community

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2014

Comparing Server Energy Use and Efficiency Using Small Sample Sizes

This report documents a demonstration that compared the energy consumption and efficiency of a limited sample size of server-type IT equipment from different manufacturers by measuring power at the server power supply power cords. The results are specific to the equipment and methods used. However, it is hoped that those responsible for IT equipment selection can used the methods described to choose models that optimize energy use efficiency. The demonstration was conducted in a data center at Lawrence Berkeley National Laboratory in Berkeley, California. It was performed with five servers of similar mechanical and electronic specifications; three from Intel and one each from Dell and Supermicro. Server IT equipment is constructed using commodity components, server manufacturer-designed assemblies, and control systems. Server compute efficiency is constrained by the commodity component specifications and integration requirements. The design freedom, outside of the commodity component constraints, provides room for the manufacturer to offer a product with competitive efficiency that meets market needs at a compelling price. A goal of the demonstration was to compare and quantify the server efficiency for three different brands. The efficiency is defined as the average compute rate (computations per unit of time) divided by the average energy consumption rate. The research team used an industry standard benchmark software package to provide a repeatable software load to obtain the compute rate and provide a variety of power consumption levels. Energy use when the servers were in an idle state (not providing computing work) were also measured. At high server compute loads, all brands, using the same key components (processors and memory), had similar results; therefore, from these results, it could not be concluded that one brand is more efficient than the other brands. The test results show that the power consumption variability caused by the key components as a group is similar to all other components as a group. However, some differences were observed. The Supermicro server used 27 percent more power at idle compared to the other brands. The Intel server had a power supply control feature called cold redundancy, and the data suggest that cold redundancy can provide energy savings at low power levels. Test and evaluation methods that might be used by others having limited resources for IT equipment evaluation are explained in the report.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2015

MONTE CARLO ANALYSES OF THE YALINA THERMAL FACILITY WITH SERPENT STEREOLITHOGRAPHY GEOMETRY MODEL

This paper analyzes the YALINA Thermal subcritical assembly of Belarus using two different Monte Carlo transport programs, SERPENT and MCNP. The MCNP model is based on combinatorial geometry and universes hierarchy, while the SERPENT model is based on Stereolithography geometry. The latter consists of unstructured triangulated surfaces defined by the normal and vertices. This geometry format is used by 3D printers and it has been created by: the CUBIT software, MATLAB scripts, and C coding. All the Monte Carlo simulations have been performed using the ENDF/B-VII.0 nuclear data library. Both MCNP and SERPENT share the same geometry specifications, which describe the facility details without using any material homogenization. Three different configurations have been studied with different number of fuel rods. The three fuel configurations use 216, 245, or 280 fuel rods, respectively. The numerical simulations show that the agreement between SERPENT and MCNP results is within few tens of pcms.

CUBIT↗