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The effects of bone on proton NMR relaxation times of surrounding liquids

Preliminary attempts by our group at UCSF to assess fat content of vertebral marrow in the lumbar spine using relaxation time information demonstrated that the presence of trabecular bone affects relaxation times. The objective of this work was a thorough study of the effects of bone on NMR relaxation characteristics of surrounding liquids. Trabecular bone from autopsy specimens was ground up and sifted into a series of powders with graded densities ranging from 0.3 gm/cc to 0.8 gm/cc. Each powder was placed first in n-saline and then in cottonseed oil. With spectroscopy, spin-lattice relaxation times (T1) and effective spin-spin relaxation times (T2*) were measured for each liquid in each bone powder. As bone density and surface to volume ratio increased, T1 decreased faster for saline than for oil. T2* decreased significantly for both water and oil as the surface to volume ratio increased. It was concluded that effects of water on T1 could be explained by a surface interaction at the bone/liquid interface, which restricted rotational and translational motion of nearby molecules. The T1s of oil were not affected since oil molecules are nonpolar, do not participate in significant intermolecular hydrogen bonding, and therefore would not be expected to interact strongly with the bone surface. Effects on T2* could be explained by local magnetic field inhomogeneities created by discontinuous magnetic susceptibility near the bone surface. These preliminary results suggest that water in contact with trabecular bone in vivo will exhibit shortened relaxation times.

NASA Discipline Musculoskeletal↗

The Impact of the Sun on Passive Remote Sensing at L-band

The sun is a strong source of radiation at L-band behaving roughly like a thermal source with a temperature ranging between 10(exp 5) - 10(exp 7) K, depending on solar activity. This is an important consideration at 1.4 GHz (the window set aside for passive use only) where future satellite sensors will operate to monitor soil moisture and sea surface salinity (e.g. SMOS, Aquarius, and Hydros). Straight forward calculations show that such a source of radiation can be a significant issue for these remote sensing applications, especially in the case of remote sensing of sea surface salinity. Radiation from the sun impacts passive remote sensing systems in several ways. First, is the solar radiation that comes directly from the sun (line-of-sight from sun to spacecraft that enters the radiometer through antenna side lobes). This is a particular problem for sensors in sunsynchronous orbits near the terminator (e.g. orbits with equatorial crossing times near 6am/6pm) because the spacecraft is in the sun most of the time. Second, is solar radiation that is reflected (specularly) from the mean surface to the radiometer. This contribution can be nearly as large as the direct ray, especially when the reflection is from the ocean surface which has a high reflection coefficient. Finally, there is "incoherent" signal reflected from the surface structure (roughness) to the radiometer antenna. Examples illustrating the significance of these terms is presented for the case of a pushbroom radiometer such as Aquarius and a conically scanning radiometer such as proposed for Hydros. Calculations are made using a set of theoretical patterns for these beams together with data on solar radiation obtained from by a worldwide network of observing stations known as Radio Solar Telescope Network (RSTN). Near solar minimum, solar contamination is not a problem unless the sun enters near the main beam. But near solar maximum, account must be made for radiation from the sun even when the signal enters in sidelobes far from the main beam.

LeVine, David M.↗

Decision Support Tool Evaluation Report for Coral Reef Early Warning System (CREWS) Version 7.0

The Coral Reef Early Warning System (CREWS) is operated by NOAA's Office of Oceanic and Atmospheric Research as part of its Coral Reef Watch program in response to the deteriorating global state of coral reef and related benthic ecosystems. In addition to sea surface temperatures (SSTs), the two most important parameters used by the CREWS network in generating coral reef bleaching alerts are 1) wind speed and direction and 2) photosynthetically available radiation (PAR). NASA remote sensing products that can enhance CREWS in these areas include SST and PAR products from the Moderate Resolution Imaging Spectroradiometer (MODIS) and wind data from the Quick Scatterometer (QuikSCAT). CREWS researchers are also interested in chlorophyll, chromophoric dissolved organic matter (CDOM), and salinity. Chlorophyll and CDOM are directly available as NASA products, while rainfall (an available NASA product) can be used as a proxy for salinity. Other potential NASA inputs include surface reflectance products from MODIS, the Advanced Spaceborne Thermal Emission and Reflection Radiometer, and Landsat. This report also identifies NASA-supported ocean circulation models and products from future satellite missions that might enchance the CREWS DST.

D'Sa, Eurico↗

(abstract) A Polarimetric Model for Effects of Brine Infiltrated Snow Cover and Frost Flowers on Sea Ice Backscatter

A polarimetric scattering model is developed to study effects of snow cover and frost flowers with brine infiltration on thin sea ice. Leads containing thin sea ice in the Artic icepack are important to heat exchange with the atmosphere and salt flux into the upper ocean. Surface characteristics of thin sea ice in leads are dominated by the formation of frost flowers with high salinity. In many cases, the thin sea ice layer is covered by snow, which wicks up brine from sea ice due to capillary force. Snow and frost flowers have a significant impact on polarimetric signatures of thin ice, which needs to be studied for accessing the retrieval of geophysical parameters such as ice thickness. Frost flowers or snow layer is modeled with a heterogeneous mixture consisting of randomly oriented ellipsoids and brine infiltration in an air background. Ice crystals are characterized with three different axial lengths to depict the nonspherical shape. Under the covering multispecies medium, the columinar sea-ice layer is an inhomogeneous anisotropic medium composed of ellipsoidal brine inclusions preferentially oriented in the vertical direction in an ice background. The underlying medium is homogeneous sea water. This configuration is described with layered inhomogeneous media containing multiple species of scatterers. The species are allowed to have different size, shape, and permittivity. The strong permittivity fluctuation theory is extended to account for the multispecies in the derivation of effective permittivities with distributions of scatterer orientations characterized by Eulerian rotation angles. Polarimetric backscattering coefficients are obtained consistently with the same physical description used in the effective permittivity calculation. The mulitspecies model allows the inclusion of high-permittivity species to study effects of brine infiltrated snow cover and frost flowers on thin ice. The results suggest that the frost cover with a rough interface significantly increases the backscatter from thin saline ice and the polarimetric signature becomes closer to the isotropic characteristics. The snow cover also modifies polarimetric signatures of thin sea ice depending on the snow mixture and the interface condition.

thin sea ice radar backscatter frost flowers snow ↗

Aquarius Mission Technical Overview

Aquarius is an L-band microwave instrument being developed to map the surface salinity field of the oceans from space. It is part of the Aquarius/SAC-D mission, a partnership between the USA (NASA) and Argentina (CONAE) with launch scheduled for early in 2009. The primary science objective of this mission is to monitor the seasonal and interannual variation of the large scale features of the surface salinity field in the open ocean with a spatial resolution of 150 km and a retrieval accuracy of 0.2 psu globally on a monthly basis.

LeVine, D. M.↗

Lab-Scale Study of the Calcium Carbonate Dissolution and Deposition by Marine Cyanobacterium Phormidium subcapitatum

Suggestions that calcification in marine organisms changes in response to global variations in seawater chemistry continue to be advanced (Wilkinson, 1979; Degens et al. 1985; Kazmierczak et al. 1986; R. Riding 1992). However, the effect of [Na+] on calcification in marine cyanobacteria has not been discussed in detail although [Na+] fluctuations reflect both temperature and sea-level fluctuations. The goal of these lab-scale studies therefore was to study the effect of environmental pH and [Na+] on CaCO3 deposition and dissolution by marine cyanobacterium Phormidium subcapitatum. Marine cyanobacterium P. subcapitatum has been cultivated in ASN-III medium. [Ca2+] fluctuations were monitored with Ca(2+) probe. Na(+) concentrations were determined by the initial solution chemistry. It was found that the balance between CaCO3 dissolution and precipitation induced by P. subcapitatum grown in neutral ASN III medium is very close to zero. No CaCO3 precipitation induced by cyanobacterial growth occurred. Growth of P. subcapitatum in alkaline ASN III medium, however, was accompanied by significant oscillations in free Ca(2+) concentration within a Na(+) concentration range of 50-400 mM. Calcium carbonate precipitation occurred during the log phase of P. subcapitatum growth while carbonate dissolution was typical for the stationary phase of P. subcapitatum growth. The highest CaCO3 deposition was observed in the range of Na(+) concentrations between 200-400 mM. Alkaline pH also induced the clamping of P. subcapitatum filaments, which appeared to have a strong affinity to envelop particles of chemically deposited CaCO3 followed by enlargement of those particles size. EDS analysis revealed the presence of Mg-rich carbonate (or magnesium calcite) in the solution containing 10-100 mM Na(+); calcite in the solution containing 200 mM Na(+); and aragonite in the solution containing with 400 mM Na(+). Typical present-day seawater contains xxmM Na(+). Early (Archean) seawater was likely less saline. The division of marine cyanobacterium P. subcapitatum is associated with periodic deposition and dissolution of CaCO3, the rhythms and intensity of which are dependent on concentrations of both OH(-) and Na(+). Thus, the role of present-day marine cyanobacteria in the global carbonate cycle might be reduced to aggregation and recrystallization of available CaCO3 particles in marine water rather than long-term precipitation and accumulation of CaCO3 deposits. For lower Na(+) concentrations, precipitation of carbonates by cyanobacteria would be even less significant. These results suggest that the lack of calcified cyanobacteria in stromatalite-bearing Precambrian sequences can be explained not only by high dissolved inorganic carbon concentrations but also by lower salinity, as well as possible lower pH compared to present-day oceans.

Karakis, S. G.↗

On the Cause of Eastern Equatorial Pacific Ocean T-S Variations Associated with El Nino

The nature of observed variations in temperature-salinity (T-S) relationship between El Nino and non-El Nino years in the pycnocline of the eastern equatorial Pacific Ocean (NINO3 region, 5(deg)S-5(deg)N, 150(deg)W-90(deg)W) is investigated using an ocean general circulation model. The origin of the subject water mass is identified using the adjoint of a simulated passive tracer. The higher salinity during El Nino is attributed to larger convergence of saltier water from the Southern Hemisphere and smaller convergence of fresher water from the Northern Hemisphere.

interannual variability↗

Patent Foramen Ovale: Association between the Degree of Shunt by Contrast Transesophageal Echocardiography and the Risk of Future Ischemic Neurologic Events

This study investigated whether there is an association between the degree of interatrial shunting across a patent foramen ovale, as determined by saline contrast transesophageal echocardiography, and the risk of subsequent systemic embolic events, including stroke. Thirty-four patients found to have patent foramen ovale during transesophageal echocardiography were divided into two groups on the basis of the maximum number of microbubbles in the left heart in any single frame after intravenous saline contrast injection: group 1 (n = 16) with a "large" degree of shunt (220 microbubbles) and group 2 (n = 18) with a "small" degree of shunt (23 but <20 microbubbles). Patients were followed up over a mean period of 21 months for subsequent systemic embolic events, including transient ischemic attack and stroke. Five (31%) of the patients with large shunts had subsequent ischemic neurologic events, whereas none of the patients with small shunts had embolic events (p= 0.03). These events occurred in spite of antiplatelet or anticoagulant therapy. We conclude that patients with a large degree of shunt across a patent foramen ovale, as determined by contrast transesophageal echocardiography, are at a significantly higher risk for subsequent adverse neurologic events compared with patients with a small degree of shunt.

Stone, David A.↗

Advanced Systems for Monitoring Underwater Sounds

The term "Passive Acoustic Monitoring System" (PAMS) describes a developmental sensing-and-data-acquisition system for recording underwater sounds. The sounds (more precisely, digitized and preprocessed versions from acoustic transducers) are subsequently analyzed by a combination of data processing and interpretation to identify and/or, in some cases, to locate the sources of those sounds. PAMS was originally designed to locate the sources such as fish of species that one knows or seeks to identify. The PAMS unit could also be used to locate other sources, for example, marine life, human divers, and/or vessels. The underlying principles of passive acoustic sensing and analyzing acoustic-signal data in conjunction with temperature and salinity data are not new and not unique to PAMS. Part of the uniqueness of the PAMS design is that it is the first deep-sea instrumentation design to provide a capability for studying soniferous marine animals (especially fish) over the wide depth range described below. The uniqueness of PAMS also lies partly in a synergistic combination of advanced sensing, packaging, and data-processing design features with features adapted from proven marine instrumentation systems. This combination affords a versatility that enables adaptation to a variety of undersea missions using a variety of sensors. The interpretation of acoustic data can include visual inspection of power-spectrum plots for identification of spectral signatures of known biological species or artificial sources. Alternatively or in addition, data analysis could include determination of relative times of arrival of signals at different acoustic sensors arrayed at known locations. From these times of arrival, locations of acoustic sources (and errors in those locations) can be estimated. Estimates of relative locations of sources and sensors can be refined through analysis of the attenuation of sound in the intervening water in combination with water-temperature and salinity data acquired by instrumentation systems other than PAMS. A PAMS is packaged as a battery-powered unit, mated with external sensors, that can operate in the ocean at any depth from 2 m to 1 km. A PAMS includes a pressure housing, a deep-sea battery, a hydrophone (which is one of the mating external sensors), and an external monitor and keyboard box. In addition to acoustic transducers, external sensors can include temperature probes and, potentially, underwater cameras. The pressure housing contains a computer that includes a hard drive, DC-to- DC power converters, a post-amplifier board, a sound card, and a universal serial bus (USB) 4-port hub.

Lane, Michael↗

Two-Dimensional Synthetic-Aperture Radiometer

A two-dimensional synthetic-aperture radiometer, now undergoing development, serves as a test bed for demonstrating the potential of aperture synthesis for remote sensing of the Earth, particularly for measuring spatial distributions of soil moisture and ocean-surface salinity. The goal is to use the technology for remote sensing aboard a spacecraft in orbit, but the basic principles of design and operation are applicable to remote sensing from aboard an aircraft, and the prototype of the system under development is designed for operation aboard an aircraft. In aperture synthesis, one utilizes several small antennas in combination with a signal processing in order to obtain resolution that otherwise would require the use of an antenna with a larger aperture (and, hence, potentially more difficult to deploy in space). The principle upon which this system is based is similar to that of Earth-rotation aperture synthesis employed in radio astronomy. In this technology the coherent products (correlations) of signals from pairs of antennas are obtained at different antenna-pair spacings (baselines). The correlation for each baseline yields a sample point in a Fourier transform of the brightness-temperature map of the scene. An image of the scene itself is then reconstructed by inverting the sampled transform. The predecessor of the present two-dimensional synthetic-aperture radiometer is a one-dimensional one, named the Electrically Scanned Thinned Array Radiometer (ESTAR). Operating in the L band, the ESTAR employs aperture synthesis in the cross-track dimension only, while using a conventional antenna for resolution in the along-track dimension. The two-dimensional instrument also operates in the L band to be precise, at a frequency of 1.413 GHz in the frequency band restricted for passive use (no transmission) only. The L band was chosen because (1) the L band represents the long-wavelength end of the remote- sensing spectrum, where the problem of achieving adequate spatial resolution is most critical and (2) imaging airborne instruments that operate in this wavelength range and have adequate spatial resolution are difficult to build and will be needed in future experiments to validate approaches for remote sensing of soil moisture and ocean salinity. The two-dimensional instrument includes a rectangular array of patch antennas arranged in the form of a cross. The ESTAR uses analog correlation for one dimension, whereas the two-dimensional instrument uses digital correlation. In two dimensions, many more correlation pairs are needed and low-power digital correlators suitable for application in spaceborne remote sensing will help enable this technology. The two-dimensional instrument is dual-polarized and, with modification, capable of operating in a polarimetric mode. A flight test of the instrument took place in June 2003 and it participated in soil moisture experiments during the summers of 2003 and 2004.

LeVine, David M.↗

Application of Reflected Global Navigation Satellite System (GNSS-R) Signals in the Estimation of Sea Roughness Effects in Microwave Radiometry

In February-March 2009 NASA JPL conducted an airborne field campaign using the Passive Active L-band System (PALS) and the Ku-band Polarimetric Scatterometer (PolSCAT) collecting measurements of brightness temperature and near surface wind speeds. Flights were conducted over a region of expected high-speed winds in the Atlantic Ocean, for the purposes of algorithm development for salinity retrievals. Wind speeds encountered were in the range of 5 to 25 m/s during the two weeks deployment. The NASA-Langley GPS delay-mapping receiver (DMR) was also flown to collect GPS signals reflected from the ocean surface and generate post-correlation power vs. delay measurements. This data was used to estimate ocean surface roughness and a strong correlation with brightness temperature was found. Initial results suggest that reflected GPS signals, using small low-power instruments, will provide an additional source of data for correcting brightness temperature measurements for the purpose of sea surface salinity retrievals.

Voo, Justin K.↗

Compact Radiometers Expand Climate Knowledge

To gain a better understanding of Earth's water, energy, and carbon cycles, NASA plans to embark on the Soil Moisture Active and Passive mission in 2015. To prepare, Goddard Space Flight Center provided Small Business Innovation Research (SBIR) funding to ProSensing Inc., of Amherst, Massachusetts, to develop a compact ultrastable radiometer for sea surface salinity and soil moisture mapping. ProSensing incorporated small, low-cost, high-performance elements into just a few circuit boards and now offers two lightweight radiometers commercially. Government research agencies, university research groups, and large corporations around the world are using the devices for mapping soil moisture, ocean salinity, and wind speed.

Source record↗

Lessons Learned from Assimilating Altimeter Data into a Coupled General Circulation Model with the GMAO Augmented Ensemble Kalman Filter

Satellite altimetry measurements have provided global, evenly distributed observations of the ocean surface since 1993. However, the difficulties introduced by the presence of model biases and the requirement that data assimilation systems extrapolate the sea surface height (SSH) information to the subsurface in order to estimate the temperature, salinity and currents make it difficult to optimally exploit these measurements. This talk investigates the potential of the altimetry data assimilation once the biases are accounted for with an ad hoc bias estimation scheme. Either steady-state or state-dependent multivariate background-error covariances from an ensemble of model integrations are used to address the problem of extrapolating the information to the sub-surface. The GMAO ocean data assimilation system applied to an ensemble of coupled model instances using the GEOS-5 AGCM coupled to MOM4 is used in the investigation. To model the background error covariances, the system relies on a hybrid ensemble approach in which a small number of dynamically evolved model trajectories is augmented on the one hand with past instances of the state vector along each trajectory and, on the other, with a steady state ensemble of error estimates from a time series of short-term model forecasts. A state-dependent adaptive error-covariance localization and inflation algorithm controls how the SSH information is extrapolated to the sub-surface. A two-step predictor corrector approach is used to assimilate future information. Independent (not-assimilated) temperature and salinity observations from Argo floats are used to validate the assimilation. A two-step projection method in which the system first calculates a SSH increment and then projects this increment vertically onto the temperature, salt and current fields is found to be most effective in reconstructing the sub-surface information. The performance of the system in reconstructing the sub-surface fields is particularly impressive for temperature, but not as satisfactory for salt.

Keppenne, Christian↗

Final Report for Intravenous Fluid Generation (IVGEN) Spaceflight Experiment

NASA designed and operated the Intravenous Fluid Generation (IVGEN) experiment onboard the International Space Station (ISS), Increment 23/24, during May 2010. This hardware was a demonstration experiment to generate intravenous (IV) fluid from ISS Water Processing Assembly (WPA) potable water using a water purification technique and pharmaceutical mixing system. The IVGEN experiment utilizes a deionizing resin bed to remove contaminants from feedstock water to a purity level that meets the standards of the United States Pharmacopeia (USP), the governing body for pharmaceuticals in the United States. The water was then introduced into an IV bag where the fluid was mixed with USP-grade crystalline salt to produce USP normal saline (NS). Inline conductivity sensors quantified the feedstock water quality, output water purity, and NS mixing uniformity. Six 1.5-L bags of purified water were produced. Two of these bags were mixed with sodium chloride to make 0.9 percent NS solution. These two bags were returned to Earth to test for compliance with USP requirements. On-orbit results indicated that all of the experimental success criteria were met with the exception of the salt concentration. Problems with a large air bubble in the first bag of purified water resulted in a slightly concentrated saline solution of 117 percent of the target value of 0.9 g/L. The second bag had an inadequate amount of salt premeasured into the mixing bag resulting in a slightly deficient salt concentration of 93.8 percent of the target value. The USP permits a range from 95 to 105 percent of the target value. The testing plans for improvements for an operational system are also presented.

McQuillen, John B.↗

Digital Receiver for Microwave Radiometry

A receiver proposed for use in L-band microwave radiometry (for measuring soil moisture and sea salinity) would utilize digital signal processing to suppress interfering signals. Heretofore, radio frequency interference has made it necessary to limit such radiometry to a frequency band about 20 MHz wide, centered at .1,413 MHz. The suppression of interference in the proposed receiver would make it possible to expand the frequency band to a width of 100 MHz, thereby making it possible to obtain greater sensitivity and accuracy in measuring moisture and salinity

Ellingson, Steven W.↗

Aquarius and the Aquarius/SAC-D Mission

Aquarius is a combination L-band radiometer and scatterometer designed to map the salinity field at the ocean surface from space. It will be flown on the Aquarius/SAC-D mission, a partnership between the USA space agency (NASA) and Argentine space agency (CONAE). The mission is composed of two parts: (a) The Aquarius instrument being developed as part of NASA.s Earth System Science Pathfinder (ESSP) program; and (b) SAC-D the fourth spacecraft service platform in the CONAE Satellite de Aplicaciones Cientificas (SAC) program. The primary focus of the mission is to monitor the seasonal and interannual variations of the salinity field in the open ocean. The mission also meets the needs of the Argentine space program for monitoring the environment and for hazard detection and includes several instruments related to these goals.

LeVine, D. M.↗

Irrigation Requirement Estimation Using Vegetation Indices and Inverse Biophysical Modeling

We explore an inverse biophysical modeling process forced by satellite and climatological data to quantify irrigation requirements in semi-arid agricultural areas. We constrain the carbon and water cycles modeled under both equilibrium, balance between vegetation and climate, and non-equilibrium, water added through irrigation. We postulate that the degree to which irrigated dry lands vary from equilibrium climate conditions is related to the amount of irrigation. The amount of water required over and above precipitation is considered as an irrigation requirement. For July, results show that spray irrigation resulted in an additional amount of water of 1.3 mm per occurrence with a frequency of 24.6 hours. In contrast, the drip irrigation required only 0.6 mm every 45.6 hours or 46% of that simulated by the spray irrigation. The modeled estimates account for 87% of the total reported irrigation water use, when soil salinity is not important and 66% in saline lands.

Bounoua, Lahouari↗

An Evaluation of Antarctica as a Calibration Target for Passive Microwave Satellite Missions with Climate Data Record Applications

Passive microwave remote sensing at L-band (1.4 GHz) is sensitive to soil moisture and sea surface salinity, both important climate variables. Science studies involving these variables can now take advantage of new satellite L-band observations. The first mission with regular global passive microwave observations at L-band is the European Space Agency's Soil Moisture and Ocean Salinity (SMOS), launched November, 2009. A second mission, NASA's Aquarius, was launched June, 201 I. A third mission, NASA's Soil Moisture Active Passive (SMAP) is scheduled to launch in 2014. Together, these three missions may provide a decade-long data record-provided that they are intercalibrated. The intercalibration is best performed at the radiance (brightness temperature) level, and Antarctica is proving to be a key calibration target. However, Antarctica has thus far not been fully characterized as a potential target. This paper will present evaluations of Antarctica as a microwave calibration target for the above satellite missions. Preliminary analyses have identified likely target areas, such as the vicinity of Dome-C and larger areas within East Antarctica. Physical sources of temporal and spatial variability of polar firn are key to assessing calibration uncertainty. These sources include spatial variability of accumulation rate, compaction, surface characteristics (dunes, micro-topography), wind patterns, and vertical profiles of density and temperature. Using primarily SMOS data, variability is being empirically characterized and attempts are being made to attribute observed variability to physical sources. One expected outcome of these studies is the potential discovery of techniques for remotely sensing--over all of Antarctica-parameters such as surface temperature.

Kim, Edward↗