Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “quantification”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 901 records · Page 50
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Isotope ratio-based quantification of carbon assimilation highlights the role of plastidial isoprenoid precursor availability in photosynthesis

Abstract Background We report a method to estimate carbon assimilation based on isotope ratio-mass spectrometry (IRMS) of 13 CO 2 labeled plant tissue. Photosynthetic carbon assimilation is the principal experimental observable which integrates important aspects of primary plant metabolism. It is traditionally measured through gas exchange. Despite its centrality in plant research, gas exchange performs poorly with rosette growth habits typical of Arabidopsis thaliana , mutant lines with limited biomass, and accounts poorly for leaf shading. Results IRMS-based carbon assimilation values from plants labeled at different light intensities were compared to those obtained by gas exchange, and the two methods yielded similar values. Using this method, we observed a strong correlation between 13 C content and labeling time (R 2 = 0.999) for 158 wild-type plants labeled for 6 to 42 min. Plants cultivated under different light regimes showed a linear response with respect to carbon assimilation, varying from 7.38 nmol 13 C mg −1 leaf tissue min −1 at 80 PAR to 19.27 nmol 13 C mg −1 leaf tissue min −1 at 500 PAR. We applied this method to examine the link between inhibition of the 2 C -methyl- d -erythritol-4-phosphate (MEP) pathway and suppression of photosynthesis. A significant decrease in carbon assimilation was observed when metabolic activity in the MEP pathway was compromised by mutation or herbicides targeting the MEP pathway. Mutants affected in MEP pathway genes 1-DEOXY- d -XYLULOSE 5-PHOSPHATE SYNTHASE (DXS) or 1-HYDROXY-2-METHYL-2-(E)-BUTENYL 4-DIPHOSPHATE SYNTHASE (HDS) showed assimilation rates 36% and 61% lower than wild type. Similarly, wild type plants treated with the MEP pathway inhibitors clomazone or fosmidomycin showed reductions of 52% and 43%, respectively, while inhibition of the analogous mevalonic acid pathway, which supplies the same isoprenoid intermediates in the cytosol, did not, suggesting inhibition of photosynthesis was specific to disruption of the MEP pathway. Conclusions This method provides an alternative to gas exchange that offers several advantages: resilience to differences in leaf overlap, measurements based on tissue mass rather than leaf surface area, and compatibility with mutant Arabidopsis lines which are not amenable to gas exchange measurements due to low biomass and limited leaf surface area. It is suitable for screening large numbers of replicates simultaneously as well as post-hoc analysis of previously labeled plant tissue and is complementary to downstream detection of isotopic label in targeted metabolite pools.

2C‑methyl‑d‑erythritol 4‑phosphate pathway↗
DOE OSTI2023

Uncertain of uncertainties? A comparison of uncertainty quantification metrics for chemical data sets

Abstract With the increasingly more important role of machine learning (ML) models in chemical research, the need for putting a level of confidence to the model predictions naturally arises. Several methods for obtaining uncertainty estimates have been proposed in recent years but consensus on the evaluation of these have yet to be established and different studies on uncertainties generally uses different metrics to evaluate them. We compare three of the most popular validation metrics (Spearman’s rank correlation coefficient, the negative log likelihood (NLL) and the miscalibration area) to the error-based calibration introduced by Levi et al. ( Sensors 2022 , 22 , 5540). Importantly, metrics such as the negative log likelihood (NLL) and Spearman’s rank correlation coefficient bear little information in themselves. We therefore introduce reference values obtained through errors simulated directly from the uncertainty distribution. The different metrics target different properties and we show how to interpret them, but we generally find the best overall validation to be done based on the error-based calibration plot introduced by Levi et al. Finally, we illustrate the sensitivity of ranking-based methods (e.g. Spearman’s rank correlation coefficient) towards test set design by using the same toy model ferent test sets and obtaining vastly different metrics (0.05 vs. 0.65).

Rasmussen, Maria H.↗
DOE OSTI2021

Integrating deep neural networks with full-waveform inversion: Reparameterization, regularization, and uncertainty quantification

Full-waveform inversion (FWI) is an accurate imaging approach for modeling the velocity structure by minimizing the misfit between recorded and predicted seismic waveforms. However, the strong nonlinearity of FWI resulting from fitting oscillatory waveforms can trap the optimization in local minima. We have adopted a neural-network-based full-waveform inversion (NNFWI) method that integrates deep neural networks with FWI by representing the velocity model with a generative neural network. Neural networks can naturally introduce spatial correlations as regularization to the generated velocity model, which suppresses noise in the gradients and mitigates local minima. Furthermore, the velocity model generated by neural networks is input to the same partial differential equation (PDE) solvers used in conventional FWI. The gradients of the neural networks and PDEs are calculated using automatic differentiation, which back propagates gradients through the acoustic PDEs and neural network layers to update the weights of the generative neural network. Experiments on 1D velocity models, the Marmousi model, and the 2004 BP model determine that NNFWI can mitigate local minima, especially for imaging high-contrast features such as salt bodies, and it significantly improves the inversion in the presence of noise. Adding dropout layers to the neural network model also allows analyzing the uncertainty of the inversion results through Monte Carlo dropout. NNFWI opens a new pathway to combine deep learning and FWI for exploiting the characteristics of deep neural networks and the high accuracy of PDE solvers. Because NNFWI does not require extra training data and optimization loops, it provides an attractive and straightforward alternative to conventional FWI.

58 GEOSCIENCES↗
DOE OSTI2020

Gas hydrate quantification in Walker Ridge block 313, Gulf of Mexico, from full-waveform inversion of ocean-bottom seismic data

The Gulf of Mexico (GOM) Joint Industry Project Leg 2 logging-while-drilling data in Walker Ridge lease block 313 (WR313) in the GOM detected gas hydrate in coarse- and fine-grained sediments at sites WR313-G and WR313-H. The coarse-grained units are thin ([Formula: see text]) and highly saturated, whereas the fine-grained unit is thick (approximately 200 m) with low saturation and fracture-filling gas hydrate. Unlike its coarse-grained counterpart, the seismic character of the fine-grained unit does not clearly indicate the presence of gas hydrate, which would likely have remained undiscovered in the absence of drilling. In this paper, through frequency-domain acoustic full-waveform inversion (FWI) of ocean-bottom seismometer data along a 2D multichannel seismic transect near sites WR313-G and WR313-H, we detect and quantify gas hydrate in the fine-grained unit. Key results are as follows: First, the base of the gas hydrate stability zone, which is not obvious in the reflection profile, can be discerned in the FWI results. Second, the gas hydrate in the fine-grained unit is mainly confined to the area between two sets of opposite-dipping normal faults implying that the fault architecture may be partially responsible for this gas hydrate accumulation and distribution.

Geochemistry & Geophysics↗
DOE OSTI2022

Reactivity initiated accident uncertainty quantification for fuel assembly with subchannel code

UNIST CORE lab has developed a multiphysics coupling framework (MPCORE) consisting of Neutronics, Thermal Hydraulics and Fuel Performance modules. It can accommodate one-dimensional as well as sub-channel code Thermal Hydraulics (TH) module. Generally, running a transient requires more computational power due to the convergence of modules with each other. The difference between one-dimensional and sub-channel TH modules is studied in this research for a Reactivity Initiated Accident (RIA). Both TH modules are compared for a RIA uncertainty propagation in a single VERA fuel assembly with 2.11% enrichment. MPCORE is capable of analyzing the transient at any burnup point but for current work, only fresh fuel has been considered. The results have been obtained using dynamic gap heat conductance in FRAPTRAN. Peak centerline temperature, fuel enthalpy and DNBR are compared for both the approaches. The results indicate that the use of sub-channel code lead to greater safety margin for critical parameters. Computation time comparison is also presented for both the cases. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2022

Quantification of neural networks uncertainties with applications to SAFARI-1 axial neutron flux profiles

Deep Neural Networks (DNNs) have been widely used as a data-driven modelling tool in nuclear engineering. However, as a Machine Learning model, Artificial Neural Network (ANN) predictions are subjected to uncertainties originating from the noise in training data, incomplete coverage of the domain, and imperfect neural network architectures. In this work, we target at quantifying the prediction/approximation uncertainties of ANNs using Monte Carlo Dropout (MCD), as well as Bayesian Neural Networks (BNNs) which are solved by variational inference. With a demonstration problem in which neural networks are used to predict the assembly axial neutron flux profiles, the results have shown that the three different neural network models (regular DNNs, DNNs solved with MCD and BNNs) can produce results that agree very well among each other and with the measurement data, on cycles that are not used in the training process. Besides the excellent generalization capability, the uncertainty bands produced by MCD and BNN agree very well, and in general, they can fully envelop the noisy measurement data points. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
DOE OSTI2021

Revisiting spontaneous Raman scattering for direct oxygen atom quantification

In this paper, the counterintuitive and largely unknown Raman activity of oxygen atoms is evaluated for its capacity to determine absolute densities in gases with significant O-density. The study involves C O 2 microwave plasma to generate a self-calibrating mixture and establish accurate cross sections for the 3 P 2 ↔<!-- ↔ --> 3 P 1 and 3 P 2 ↔<!-- ↔ --> 3 P 0 transitions. The approach requires conservation of stoichiometry, confirmed within experimental uncertainty by a 1D fluid model. The measurements yield σ<!-- σ --> J = 2 →<!-- → --> 1 = 5.27 ±<!-- ± --> s y s : 0.53 r a n d : 0.17 ×<!-- × --> 10 -<!-- - --> 31 c m 2 / s r and σ<!-- σ --> J = 2 →<!-- → --> 0 = 2.11 ±<!-- ± --> s y s : 0.21 r a n d : 0.06 ×<!-- × --> 10 -<!-- - --> 31 c m 2 / s r , and the detection limit is estimated to be 1 ×<!-- × --> 10 15 c m -<!-- - --> 3 for systems without other scattering species.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2020

Quantification of Ebola virus replication kinetics in vitro

Mathematical modelling has successfully been used to provide quantitative descriptions of many viral infections, but for the Ebola virus, which requires biosafety level 4 facilities for experimentation, modelling can play a crucial role. Ebola virus modelling efforts have primarily focused on in vivo virus kinetics, e.g., in animal models, to aid the development of antivirals and vaccines. But, thus far, these studies have not yielded a detailed specification of the infection cycle, which could provide a foundational description of the virus kinetics and thus a deeper understanding of their clinical manifestation. Here, we obtain a diverse experimental data set of the Ebola virus infection in vitro, and then make use of Bayesian inference methods to fully identify parameters in a mathematical model of the infection. Our results provide insights into the distribution of time an infected cell spends in the eclipse phase (the period between infection and the start of virus production), as well as the rate at which infectious virions lose infectivity. We suggest how these results can be used in future models to describe co-infection with defective interfering particles, which are an emerging alternative therapeutic.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Quantification of early nonpharmaceutical interventions aimed at slowing transmission of Coronavirus Disease 2019 in the Navajo Nation and surrounding states (Arizona, Colorado, New Mexico, and Utah)

During an early period of the Coronavirus Disease 2019 (COVID-19) pandemic, the Navajo Nation, much like New York City, experienced a relatively high rate of disease transmission. Yet, between January and October 2020, it experienced only a single period of growth in new COVID-19 cases, which ended when cases peaked in May 2020. The daily number of new cases slowly decayed in the summer of 2020 until late September 2020. In contrast, the surrounding states of Arizona, Colorado, New Mexico, and Utah all experienced at least two periods of growth in the same time frame, with second surges beginning in late May to early June. Here, we investigated these differences in disease transmission dynamics with the objective of quantifying the contributions of non-pharmaceutical interventions (NPIs) (e.g., behaviors that limit disease transmission). We considered a compartmental model accounting for distinct periods of NPIs to analyze the epidemic in each of the five regions. We used Bayesian inference to estimate region-specific model parameters from regional surveillance data (daily reports of new COVID-19 cases) and to quantify uncertainty in parameter estimates and model predictions. Our results suggest that NPIs in the Navajo Nation were sustained over the period of interest, whereas in the surrounding states, NPIs were relaxed, which allowed for subsequent surges in cases. Our region-specific model parameterizations allow us to quantify the impacts of NPIs on disease incidence in the regions of interest.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2023

Constraining Bedrock Groundwater Residence Times in a Mountain System with Environmental Tracer Observations and Bayesian Uncertainty Quantification: Modeling and Data Package

Groundwater residence times provide fundamental descriptions of hydrologic dynamics and mixing processes in mountainous watersheds. Yet, few observational datasets that can constrain groundwater residence times over broad timescales are available in high elevation mountain systems. Here we present field observations from May 2021 of dissolved noble gases (He, Ne, Ar, Kr, and Xe), Chloroflourcarbons (CFCs), Sulfurhexaflouride (SF6), and tritium (3H) sampled from the Pumphouse Lower Montane study site (wells PLM1, PLM6, and PLM7) within the East River Watershed, Colorado. The presented noble gas (PLM_noblegas_2021.csv) and environmental tracer (PLM_tracers_2021.csv) observation datasets, along with the associated modeling scripts, aide in quantifying groundwater residence times and recharge conditions in a high elevation mountain system. Furthermore, the modeling scripts quantify groundwater residence time and noble gas recharge condition uncertainties using a novel Markov-chain Monte Carlo approach. All data modeling scripts are written in the Python code.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Probabilistic Programming for Transportable Source Characterization and Uncertainty Quantification of the North Korean Nuclear Tests 2006–2017

Here, we introduce a transportable technique to determine the yield and depth of burial (DOB) from seismic source spectra of underground nuclear explosions. We demonstrate this technique on the six declared North Korean nuclear tests. This approach derives source spectra in absolute units from regional phase (Pg) amplitudes by correcting the observations for geometric spreading, attenuation, and site amplification. We couple the source spectra and explosion source models with a probabilistic programming framework that integrates deep learning techniques and Bayesian modeling. This approach permits the exchange of information across various data categories to quantify both the data and model uncertainty. This technique stands out as an innovative use of broad‐area propagation models, making it transportable across various geologic settings. This method proves to be effective in scenarios with diverse and/or limited observational data, even when the source depth is unknown. We present new independent estimates of absolute yield and DOB that are consistent with the prior assessments, underscoring the potential of this method in enhancing transportable nuclear explosion monitoring capabilities.

58 GEOSCIENCES↗
DOE OSTI2020

Development of Innovative Measurement Techniques for Fission Product Transport Quantification

This document provides the progress of a research project at Texas A&M University (TAMU), led by Idaho National Laboratory (INL), in support of the Versatile Test Reactor (VTR) program and work scope area of gas-cooled fast reactors. The VTR TAMU INL project started in October 2018. The document includes the main objectives of the project, scaling analysis applied to the experimental facilities, experimental methodology including instrumentation and techniques applied, and up-to-date results from the experimental and numerical studies.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
DOE OSTI2020

Energy Saving Quantification on Ductless Heat Pump (DHP) in Existing Homes

In residential retrofit applications, ductless mini-split heat pumps (DHP) are often reported to have high-energy savings potential, depending on the system they are supplementing or replacing. However, recently, there have been a number of utility studies and analyses indicating these energy savings are not being achieved when the existing system is left in place for backup heating or air conditioning. The Pacific Northwest National Laboratory conducted a three-phase project to help determine which control strategies would have the most energy savings impact in various climate zones around the United States. The first phase developed the standalone simulation model for the PNNL Lab Homes and investigated the energy-saving potential from different control strategies and HVAC system configurations. The second phase focused on conducting experiments in the PNNL Lab Homes, which tested the most promising solutions that were modeled in the first phase. The third phase used the field data to calibrate the simulation model and then extrapolated the results to different climate locations and different building sizes. This report focuses on the third phase of the study, including five major parts: model calibration, parametric model setup, results, a sensitivity analysis of air leakage rate, and conclusions.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2020

Microwave digestion and quantification procedure

The samples were microwave digested to accomplish complete dissolution needed to perform quantitative analysis of their iron content. The diamond and Para B4 C samples did not dissolve during the microwave digestion and they were filtered. The supernatant was analyzed. The resulting solutions were analyzed by ICP-OES for the major cation content and by ICP-MS for trace element content.

36 MATERIALS SCIENCE↗