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NASA NTRS2000

The Evolution of Sulfide Tolerance in the Cyanobacteria

Understanding how the function of extant microorganisms has recorded both their evolutionary histories and their past interactions with the environment is a stated goal of astrobiology. We are taking a multidisciplinary approach to investigate the diversification of sulfide tolerance mechanisms in the cyanobacteria, which vary both in their degree of exposure to sulfide and in their capacity to tolerate this inhibitor of photosynthetic electron transport. Since conditions were very reducing during the first part of Earth's history and detrital sulfides have been found in Archean sediments, mechanisms conferring sulfide tolerance may have been important for the evolutionary success of the ancestors of extant cyanobacteria. Two tolerance mechanisms have been identified in this group: (1) resistance of photosystem II, the principal target of sulfide toxicity; and (2) maintenance of the ability to fix carbon despite photosystem II inhibition by utilizing sulfide as an electron donor in photosystem I - dependent, anoxygenic photosynthesis. We are presently collecting comparative data on aspects of sulfide physiology for laboratory clones isolated from a variety of habitats. These data will be analyzed within a phylogenetic framework inferred from molecular sequence data collected for these clones to test how frequently different mechanisms of tolerance have evolved and which tolerance mechanism evolved first. In addition, by analyzing these physiological data together with environmental sulfide data collected from our research sites using microelectrodes, we can also test whether the breadth of an organism's sulfide tolerance can be predicted from the magnitude of variation in environmental sulfide concentration it has experienced in its recent evolutionary past and whether greater average sulfide concentration and/or temporal variability in sulfide favors the evolution of a particular mechanism of sulfide tolerance.

Miller, Scott R.↗
NASA NTRS2002

High Abundance of Ions in Cosmic Ices

Water-rich, mixed molecular ices and polycyclic aromatic hydrocarbons (PAHs) are common throughout interstellar molecular clouds and the Solar System. Vacuum ultraviolet (VUV) irradiation and particle bombardment of these abiotic ices produces complex organic species, including important biogenic molecules such as amino acids and functionalized PAHs which may have played a role in the origin of life. This ability of such water-rich, oxygen dominated ices to promote production of complex organic species is surprising and points to an important, unusual, but previously overlooked mechanism at play within the ice. Here we report the nature of this mechanism using electronic spectroscopy. VUV-irradiation of PAH/H2O ices leads to an unprecedented and efficient (greater than 70 %) conversion of the neutral PAHs to their cation form (PAH+). Further, these H2O/PAH+ ices are stabile at temperatures below 50 K, a temperature domain common throughout interstellar clouds and the Solar System. Between 50 and 125 K they react to form the complex organics. In view of this, we conclude that charged PAHs and other molecular ions should be common and abundant in many cosmic ices. The chemical, spectroscopic and physical properties of these ion-rich ices can be of fundamental importance for objects as diverse as comets, planets, and molecular clouds and may account for several poorly understood phenomena associated with each of these object classes.

Gudipati, Murthy S.↗
NASA NTRS1976

Interstellar molecular hydrogen toward zeta Puppis

This paper reports the measurement of some 136 interstellar H2 absorption lines found in a continuous scan of the far-ultraviolet spectrum of zeta Pup at 0.05-A resolution with the Copernicus telescope. Absorptions from only the rotational levels 0 to 5 of the lowest vibrational state of the ground electronic state were observed. The total H2 column density is 2.8 by 10 to the 14th power molecules/sq cm; the ratio of H nuclei in H2 to the number in H I plus molecules is 6 by 10 to the -6th power; the population of the rotational levels can be represented by a single excitation temperature of 1120 (plus or minus 80) K. The radial velocities of all rotational levels were the same within 7 km/s and differed from most atoms and first ions by no more than 4.5 km/s on the average. The tables also list the best available data on wavelengths, oscillator strengths, and radiative damping constants for all the H2 lines with zero vibrational level likely to be observed in the interstellar gas.

Morton, D. C.↗
NASA NTRS1990

Columnar growth of CoSi2 on Si(111), Si(100) and Si(110) by molecular beam epitaxy

Codeposition of silicon and cobalt on heated silicon substrates in ratios several times the silicide stoichiometry is found to result in epitaxial columns of CoSi2 surrounded by a matrix of epitaxial silicon. For (111)-oriented wafers, nearly cylindrical columns are formed, where both columns and surrounding silicon are defect free, as deduced from transmission electron microscopy. Independent control of the column diameter and separation is possible, and diameters of 27-135 nm have been demonstrated.

Fathauer, R. W.↗
NASA NTRS2000

Theoretical Modeling and Computer Simulations for the Origins and Evolution of Reproducing Molecular Systems and Complex Systems with Many Interactive Parts

Our research effort has produced nine publications in peer-reviewed journals listed at the end of this report. The work reported here are in the following areas: (1) genetic network modeling; (2) autocatalytic model of pre-biotic evolution; (3) theoretical and computational studies of strongly correlated electron systems; (4) reducing thermal oscillations in atomic force microscope; (5) transcription termination mechanism in prokaryotic cells; and (6) the low glutamine usage in thennophiles obtained by studying completely sequenced genomes. We discuss the main accomplishments of these publications.

Liang, Shoudan↗
NASA NTRS1979

Molecules of significance in planetary aeronomy

This monograph is basically devoted to spectroscopic information of the molecules of planetary interest. Only those molecules have been dealt with which have been confirmed spectroscopically to be present in the atmosphere of major planets of our solar system and play an important role in the aeronomy of the respective planets. An introduction giving the general conditions of planets and their atmospheres including the gaseous molecules is given. Some typical planetary spectra is presented and supported with a discussion on some basic concepts of optical absorption and molecular parameters that are important to the study of planetary atmospheres. Quantities like dipole moments, transition probabilities, Einstein coefficients and line strengths, radiative life times, absorption cross sections, oscillator strengths, line widths and profiles, equivalent widths, growth curves, bond strengths, electronic transition moments, Franck-Condon factors and r-centroids, etc., are discussed. Spectroscopic information and relevant data of 6 diatomic (HF, HCL, CO, H2, O2, N2) and 6 polyatomic (CO2, N2), O3, HeO, NH3, CH4) molecules are presented.

Mohan, H.↗
NASA NTRS1985

Dynamical roles of planetary waves on the winter anomaly in the middle and lower latitudes

The winter anomaly of radio wave absorption in the ionospheric D region (65 to 90 km), caused by a factor of about ten increase in electron density, has been considered to be due to a factor of about ten increase of the nitric oxide concentration and/or a few tens of degrees Kelvin temperature rise due to a strong temperature dependency of the conversion rate of molecular ions to cluster ions. In order to investigate the mechanism of the winter anomaly, the processes that brought about these changes are identified. It is well known that stratospheric warmings sometimes accompany the winter anomaly in middle latitudes. The present study concentrates on the winter anomaly which occurred simultaneously during a sudden warming of the 1967 to 1968 winter, from middle December 1967 to middle January 1968. Variations of geophysical and ionospheric parameters are shown.

Kawahira, K.↗
NASA NTRS1990

Ionization processes in collisions of open-shell atoms. III - The autoionizing states of nitrogen

Results of a study of the energy spectra of electrons produced in collisions of N atoms with inert gases at low keV energies are reported. Ionization here is partly due to production of the (1Dnl) autoionizing states of nitrogen and partly due to another mechanism, which is presumably quasi molecular Auger ionization. A discussion of the assignments of the autoionizing states is presented.

Boumsellek, S.↗
NASA NTRS2000

Recent Results for AGN Observed by the Rossi X-Ray Timing Explorer

The Rossi X-ray Timing Explorer (RXTE) has produced many excellent observations of active galaxies, providing the best sensitivity in the 10 - 20 keV range so far. This presentation reports selected RTXE data for AGN in the context of the currently popular models. One is the recent result for two Seyfert 1 galaxies, NGC 5548 and IC4329a: both show the "canonical" Seyfert I X-ray spectra, with an underlying power law, plus Gaussian iron K line and Compton reflection. Interestingly, in both cases, the profile of the Fe K line does not extend as far to the red as seen in the famous NCG-6-30-15, and this indicates that the regions where the Fe K lines originate in AGN are diverse. Independently, in both objects we see a strong spectral variability of the primary continua, which soften as the sources brighten. The second result is for the heavily absorbed Seyfert 2 NGC 4945. The RXTE data confirm the strong absorption corresponding to the optical depth to electron scattering of about 2, but also reveal rapid variability of the hard (8-30 keV) X-ray emission on a time scale of a day or less. This suggests that for NGC 4945, the putative parsec-size molecular torus cannot be both geometrically and optically thick, and implies that the Cosmic X-ray Background is unlikely to be made up primarily of AGN with geometry as inferred for this object.

Madejski, G. M.↗
NASA NTRS2013

Iodine Tagging Velocimetry in a Mach 10 Wake

A variation on molecular tagging velocimetry (MTV) [1] designated iodine tagging velocimetry (ITV) is demonstrated. Molecular iodine is tagged by two-photon absorption using an Argon Fluoride (ArF) excimer laser. A single camera measures fluid displacement using atomic iodine emission at 206 nm. Two examples ofMTVfor cold-flowmeasurements areN2OMTV [2] and Femtosecond Laser Electronic Excitation Tagging [3]. These, like most MTV methods, are designed for atmospheric pressure applications. Neither can be implemented at the low pressures (0.1- 1 Torr) in typical hypersonic wakes. Of all the single-laser/singlecamera MTV approaches, only Nitric-Oxide Planar Laser Induced Fluorescence-based MTV [4] has been successfully demonstrated in a Mach 10 wake. Oxygen quenching limits transit times to 500 ns and accuracy to typically 30%. The present note describes the photophysics of the ITV method. Off-body velocimetry along a line is demonstrated in the aerothermodynamically important and experimentally challenging region of a hypersonic low-pressure near-wake in a Mach 10 air wind tunnel. Transit times up to 10 μs are demonstrated with conservative errors of 10%.

Balla, Robert Jeffrey↗
NASA NTRS1985

Transition probabilities of the B-prime 1Sigma(u)(+) to X 1Sigma(g)(+) system of molecular hydrogen

From published potential energy curves and transition dipole moments, there are obtained by numerical integration of the equations of nuclear motion the vibrational eigenfunctions of the X 1Sigma(g)(+) and B-prime 1Sigma(u)(+) states of H2. The probabilities of radiative transitions from the discrete vibrational levels of the excited B-prime 1Sigma(u)(+) electronic state of H2 to the discrete and continuum vibrational levels of the ground X 1Sigma(g)(+) electronic state are calculated. The Franck-Condon factors are also presented.

Kwok, T. L.↗
NASA NTRS1988

A Near-Infrared Mapping Spectrometer for investigation of Jupiter and its satellites

The Near-Infrared-Mapping Spectrometer (NIMS) is one of the science instruments in the Galileo mission, which will explore Jupiter and its satellites in the mid-1990's. The NIMS experiment will map geological units on the surfaces of the Jovian satellites and characterize their mineral content; and, for the atmosphere of Jupiter, investigate cloud properties and the spatial and temporal variability of molecular abundances. The optics are gold-coated reflective and consist of a telescope and a grating spectrometer. The balance of the instrument includes a 17-detector (silicon and indium antimonide) focal plane array, a tuning fork chopper, microprocessor-controlled electronics, and a passive radiative cooler. A wobbling secondary mirror in the telescope provides 20 pixels in one dimension of spatial scanning in a pushbroom mode with 0.5 mr x 0.5 mr instantaneous field of view. The spectral range is 0.7-5.2 microns; resolution is 0.025 micron. NIMS is the first infrared experiment to combine both spatial and spectral mapping capability in one instrument.

Aptaker, Irving M.↗
NASA NTRS1990

Interstellar absorption along the line of sight to Sigma Scorpii using Copernicus observations

From Copernicus observations of Sigma Sco, 57 individual lines of 11 elements plus the molecular species H2 and CO were identified. By using a profile-fitting technique, rather than curves of growth, it was possible to obtain column densities and Doppler b values for up to four separate components along this line of sight. Electron density in the major H I component was derived from the photoionization equilibrium of sulfur, obtaining, n(e) of about 0.3/cu cm. The neutral hydrogen density in the same component was also derived using fine-structure excitation of O I. An H II component is also present in which the electron density was n(e) about 20/cu cm. As a by-product of this analysis, previously undetermined oscillator strengths for two Mn II lines were obtained: for 1162.-017 A, f about 0.023 and for 1164.211 A, f about 0.0086.

Allen, M. M.↗
NASA NTRS2005

Laboratory Investigations of the Physical and Optical Properties of the Analogs of Individual Cosmic Dust Grains

Microdsub-micron size cosmic dust grains play an important role in the physical and dynamical process in the galaxy, the interstellar medium, and the interplanetary and planetary environments. The dust grains in various astrophysical environments are generally charged by a variety of mechanisms that include collisional process with electrons and ions, and photoelectric emissions with UV radiation. The photoelectric emission process is believed to be the dominant process in many astrophysical environments with nearby UV sources, such as the interstellar medium, diffuse clouds, the outer regions of the dense molecular clouds, interplanetary medium, dust in planetary environments and rings, cometary tails, etc. Also, the processes and mechanisms involved in the rotation and alignment of interstellar dust grains are of great interest in view of the polarization of observed starlight as a probe for evaluation of the galactic magnetic field.

Abbas, M. M.↗
NASA NTRS1982

Studies of clusters in the gas phase and application to an understanding of transitions from gaseous to the surface and condensed state

Studies of the structure, stability, electronic properties, and formation kinetics of small clusters were reviewed which provide information useful in furthering understanding of nucleation processes, liquid state properties, and the nature of surfaces. Using mass spectrometric coupled with various high pressure ion clustering and Stark effect-molecular beam techniques, the details of the primary clustering steps leading to the nucleation of bulk liquid from the vapor were and obtained by direct observation results are presented.

Castleman, A. W., Jr.↗