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At least 901 records · Page 50

Quasi-Distributed Fiber Sensor-Based Approach for Pipeline Health Monitoring: Generating and Analyzing Physics-Based Simulation Datasets for Classification

This study presents a framework for detecting mechanical damage in pipelines, focusing on generating simulated data and sampling to emulate distributed acoustic sensing (DAS) system responses. The workflow transforms simulated ultrasonic guided wave (UGW) responses into DAS or quasi-DAS system responses to create a physically robust dataset for pipeline event classification, including welds, clips, and corrosion defects. This investigation examines the effects of sensing systems and noise on classification performance, emphasizing the importance of selecting the appropriate sensing system for a specific application. The framework shows the robustness of different sensor number deployments to experimentally relevant noise levels, demonstrating its applicability in real-world scenarios where noise is present. Overall, this study contributes to the development of a more reliable and effective method for detecting mechanical damage to pipelines by emphasizing the generation and utilization of simulated DAS system responses for pipeline classification efforts. The results on the effects of sensing systems and noise on classification performance further enhance the robustness and reliability of the framework.

36 MATERIALS SCIENCE↗

SLAB: simultaneous labeling and binding affinity prediction for protein–ligand structures

Machine learning models are often used as scoring functions to predict the binding affinity of a protein–ligand complex. These models are trained with limited amounts of data with experimentally measured binding affinity values. A large number of compounds are labeled inactive through single-concentration screens without measuring binding affinities. These inactive compounds, along with the active ones, can be used to train binary classification models, while regression models are trained using compounds with binding affinities only. However, the classification and regression tasks are often handled separately, without sharing the learned feature representations. In this paper, we propose a novel model architecture that jointly performs regression and classification objectives, aiming to maximize data utilization and improve predictive performance by leveraging two complementary tasks. In our setup, the regression yields the binding affinity, whereas the classification task yields the label as active or inactive. We demonstrate our method using PDBbind, the standard 3D structure database, as well as a dataset of flavivirus protease compounds with binding affinity data. Our experiments show that the new joint training strategy improves the accuracy of the model, increasing applicability in various practical drug screening scenarios.

Biological and medical sciences↗

An exploitation of coregistered SIR-A, Seasat and Landsat images

Multispectral registration and classification of SIR-A, Seasat SAR, and Landsat MSS data is presented over two playas located in the northeastern Algerian Sahara. A supervised classification was made over six classes: salt, palm trees, dunes, limestones, gypsum and sand. The best classification is obtained by using all of the data. The images using radar only misclassify trees and salt, limestone and dunes, gypsum and dunes. Landsat only gives a good map but lacks the roughness information contained in the radar data. The Landsat/SIR-A combination gives a better classification than the Landsat/Seasat combination. Density number histograms computed within several classes on the Seasat and SIR-A data show the misclassification is mainly due to the Seasat data.

Rebillard, P.↗

Compound classification by computer treatment of low resolution mass spectra - Application to geochemical and environmental problems.

A description is given of a development of computer analysis of low-resolution chromatographic-mass spectrometric data, which provides a preliminary classification of an unknown spectrum as a listing of candidate classes of compounds. This procedure, referred to as COMSOC (Classification of Mass Spectra on Computers), operates by converting an incoming unknown mass spectrum into a simplified key word which is then compared with each of the key words held in its reference file. The advantages of COMSOC in characterizing complex mixtures are emphasized.

Smith, D. H.↗

Identification of integrated proteomics and transcriptomics signature of alcohol-associated liver disease using machine learning

Distinguishing between alcohol-associated hepatitis (AH) and alcohol-associated cirrhosis (AC) remains a diagnostic challenge. In this study, we used machine learning with transcriptomics and proteomics data from liver tissue and peripheral mononuclear blood cells (PBMCs) to classify patients with alcohol-associated liver disease. The conditions in the study were AH, AC, and healthy controls. We processed 98 PBMC RNAseq samples, 55 PBMC proteomic samples, 48 liver RNAseq samples, and 53 liver proteomic samples. First, we built separate classification and feature selection pipelines for transcriptomics and proteomics data. The liver tissue models were validated in independent liver tissue datasets. Next, we built integrated gene and protein expression models that allowed us to identify combined gene-protein biomarker panels. For liver tissue, we attained 90% nested-cross validation accuracy in our dataset and 82% accuracy in the independent validation dataset using transcriptomic data. We attained 100% nested-cross validation accuracy in our dataset and 61% accuracy in the independent validation dataset using proteomic data. For PBMCs, we attained 83% and 89% accuracy with transcriptomic and proteomic data, respectively. The integration of the two data types resulted in improved classification accuracy for PBMCs, but not liver tissue. We also identified the following gene-protein matches within the gene-protein biomarker panels: CLEC4M-CLC4M, GSTA1-GSTA2 for liver tissue and SELENBP1-SBP1 for PBMCs. In this study, machine learning models had high classification accuracy for both transcriptomics and proteomics data, across liver tissue and PBMCs. The integration of transcriptomics and proteomics into a multi-omics model yielded improvement in classification accuracy for the PBMC data. The set of integrated gene-protein biomarkers for PBMCs show promise toward developing a liquid biopsy for alcohol-associated liver disease.

60 APPLIED LIFE SCIENCES↗

Hydrological planning studies using Landsat-4 Thematic Mapper (TM)

NASA, in cooperation with the U.S. Army Corps of Engineers, is evaluating the capabilities of Landsat 4 Thematic Mapper (TM) data for environmental and hydrological applications. Attention is given to the results of studies conducted at the Clinton River Basin in Michigan and the eastern shore of the Chesapeake Bay in Maryland. In the former, the evaluation conducted was for the band combinations: (1) 2, 3, and 4; (2) 3, 4, and 5; (3) 3, 4, 5, and 6; and (4) all seven bands. In the latter case, Multispectral Scanner (MSS) and TM data were classified for combinations (1), (3) and (4). Wetland classification accuracy for the 7-band TM data in this study was found to be 9 percent higher than with MSS data, allowing more reliable and accurate monitoring.

Gervin, J. C.↗

Feature Extraction and Selection Strategies for Automated Target Recognition

Several feature extraction and selection methods for an existing automatic target recognition (ATR) system using JPLs Grayscale Optical Correlator (GOC) and Optimal Trade-Off Maximum Average Correlation Height (OT-MACH) filter were tested using MATLAB. The ATR system is composed of three stages: a cursory region of-interest (ROI) search using the GOC and OT-MACH filter, a feature extraction and selection stage, and a final classification stage. Feature extraction and selection concerns transforming potential target data into more useful forms as well as selecting important subsets of that data which may aide in detection and classification. The strategies tested were built around two popular extraction methods: Principal Component Analysis (PCA) and Independent Component Analysis (ICA). Performance was measured based on the classification accuracy and free-response receiver operating characteristic (FROC) output of a support vector machine(SVM) and a neural net (NN) classifier.

computer vision↗

Mapping project on land use changes in the carboniferous region of Santa Catarina

The utilization of remote sensing data for monitoring land use changes by means of digital image analysis is described. The following data were utilized: LANDSAT data from September 4, 1975, April 24, 1978, and September 8, 1981; LANDSAT paper photography data; area IV color photographs; IBGE topography maps, and auxiliary data about the Brazilian state of Santa Catarina. Three kinds of analyses of digital images were carried out. The project identified and mapped major classes of land use areas including urban areas, coal deposits, agricultural areas, forests, lakes, and flood plains. Five areas directly affected by coal exploration southeast of Santa Catarina are identified and described. In addition, the classification system used for organizing data about land cover in a hierarchical arrangement is presented. The project made use of two remote sensing data sources: data of MSS spectral (Mulitspectral Scanner System)/LANDSAT on a scale of 1:100,000 with approximately 80 m resolution, and infrared color aerial photographs on a scale of 1:45,000 with approximately 5 m resolution. Therefore, the classification system included three levels, two selected to be compatible with aerial photography data and the third to conform to the resolution of MSS/LANDSAT.

Valeriano, D. D.↗

Comparison of Land Cover Information from LANDSAT MSS and Airborne TMS for Hydrological Applications: Preliminary Results

Land cover information for the Clinton River Basin (Michigan) derived from LANDSAT multispectral scanner (MSS) data was compared with that from airborne thematic mapper simulator (TMS) to investigate the probable capabilities of the thematic mapper (TM) launched aboard LANDSAT-4 in July 1982. The preliminary findings for one 7.5 minute topographic map, Mt. Clemens West, are reported. Significant improvements in land cover classification accuracy were obtained using TMS data as compared with MSS data. Overall mapping accuracy increased from 49 to 61 percent with an improvement from 71 to 84 percent in the residential category. A combination of four bands with one band in each major region of the spectrum (visible, near IR, middle IR and thermal IR) provided as good a discrimination of land cover as all seven TM bands. Based on the improved land cover classification accuracy of TM, TM data has the potential to provide more useful and effective input to US Army Corps of Engineers flood forecasting and flood damage prediction/assessment models.

Gervin, J. C.↗

A parametric multiclass Bayes error estimator for the multispectral scanner spatial model performance evaluation

The author has identified the following significant results. The probability of correct classification of various populations in data was defined as the primary performance index. The multispectral data being of multiclass nature as well, required a Bayes error estimation procedure that was dependent on a set of class statistics alone. The classification error was expressed in terms of an N dimensional integral, where N was the dimensionality of the feature space. The multispectral scanner spatial model was represented by a linear shift, invariant multiple, port system where the N spectral bands comprised the input processes. The scanner characteristic function, the relationship governing the transformation of the input spatial, and hence, spectral correlation matrices through the systems, was developed.

Mobasseri, B. G.↗

Urban land use classification using synthetic aperture radar

In the cases of such land uses as the commercial and industrial, the incorporation of microwave data to that available from the visible and near visible regions may increase classification accuracy, provided that the limitations inherent in radar data are taken into consideration. Attention is presently given to several approaches to the use of radar data in land use classification of urban and near urban areas, with emphasis on L-band horizontal transmit and horizontal receive data available from Seasat-A. The Los Angeles, CA metropolitan area provides the geographic focus for this study.

Bryan, M. L.↗

The effects of merging TM and A/C radar on wetland classification

While radar does not provide detailed begetation discrimination, it provide the means to separate areas of different moisture conditions. Thus, the use of LANDSAT Thematic Mapper (TM) in conjunction with the microwave data was attempted. If successful, information on shoreline cover, emergent wetland vegetation and extent, and submerged grassbeds would provide much needed data for planning and maintenance of wetlands. Originally, the goal was to determine the accuracy with which one could categorize various types of vegetation and land use within an inland wetland using LANDSAT TM data. First, a Level 1/2 supervised classification was performed. Following a more detailed ground trust survey, a Level 3 classification was done. Aircraft L-band radar data were received and the decision was made to merge the TM and L-band data and assess whether vegetation catagories within the wetland areas could be better defined. Preliminary results indicate vegetation delineation is improved for open agricultural areas and water, but other features are more confused.

Ormsby, J. P.↗

Illinois crop-acreage estimation experiment

The University of Illinois and the U.S. Department of Agriculture have collaborated to examine the feasibility of Landsat imagery analysis for USDA crop-acreage estimation purposes. The region chosen for the experiment was ten western counties of Illinois. Preliminary crop-acreage estimates derived from the ILLIAC IV-ARPA Network analysis of Landsat data are presented for these ten counties. Assuming the practicality of similar analyses covering the entire state, a procedure is discussed for evaluating statistically the information to be gained by estimating state crop-acreage totals from Landsat imagery classification results where SRS sample survey data are used as ground truth information for classification training as opposed to estimating state crop-acreage totals directly from SRS survey data alone.

Ray, R. M., III↗

Spectral Ratio Imaging with Hyperion Satellite Data for Geological Mapping

Since the advent of LANDSAT I in 1972, many different multispectral satellites have been orbited by the U.S. and other countries. These satellites have varied from 4 spectral bands in LANDSAT I to 14 spectral bands in the ASTER sensor aboard the TERRA space platform. Hyperion is a relatively new hyperspectral sensor with over 220 spectral bands. The huge increase in the number of spectral bands offers a substantial challenge to computers and analysts alike when it comes to the task of mapping features on the basis of chemical composition, especially if little or no ground truth is available beforehand from the area being mapped. One approach is the theoretical approach of the modeler, where all extraneous information (atmospheric attenuation, sensor electronic gain and offset, etc.) is subtracted off and divided out, and laboratory (or field) spectra of materials are used as training sets to map features in the scene of similar composition. This approach is very difficult to keep accurate because of variations in the atmosphere, solar illumination, and sensor electronic gain and offset that are not always perfectly recorded or accounted for. For instance, to apply laboratory or field spectra of materials as data sets from the theoretical approach, the header information of the files must reflect the correct, up-to-date sensor electronic gain and offset and the analyst must pick the exact atmospheric model that is appropriate for the day of data collection in order for classification procedures to accurately match pixels in the scene with the laboratory or field spectrum of a desired target on the basis of the hyperspectral data. The modeling process is so complex that it is difficult to tell when it is operating well or determine how to fix it when it is incorrect. Recently RSI has announced that the latest version of their ENVI software package is not performing atmospheric corrections correctly with the FLAASH atmospheric model. It took a long time to determine that it was wrong, and may take an equally long time (or longer) to fix.

Vincent, Robert K.↗

Automated solar collector installation design including version management

Embodiments may include systems and methods to create and edit a representation of a worksite, to create various data objects, to classify such objects as various types of predefined “features” with attendant properties and layout constraints. As part of or in addition to classification, an embodiment may include systems and methods to create, associate, and edit intrinsic and extrinsic properties to these objects. A design engine may apply of design rules to the features described above to generate one or more solar collectors installation design alternatives, including generation of on-screen and/or paper representations of the physical layout or arrangement of the one or more design alternatives. Some embodiments may provide viewing, creating, and manipulating of multiple versions of a solar collector layout design for a particular installation worksite. The use of versions may allow analysis of alternative layouts, alternative feature classifications, and cost and performance data corresponding to alternative design choices. Version summary information providing a representative comparison between versions across a number of dimensions may be provided.

14 SOLAR ENERGY↗

Information analysis of a spatial database for ecological land classification

An ecological land classification was developed for a complex region in southern California using geographic information system techniques of map overlay and contingency table analysis. Land classes were identified by mutual information analysis of vegetation pattern in relation to other mapped environmental variables. The analysis was weakened by map errors, especially errors in the digital elevation data. Nevertheless, the resulting land classification was ecologically reasonable and performed well when tested with higher quality data from the region.

Davis, Frank W.↗

Evaluation of artificial neural network performance for classification of potato plants infected with potato virus Y using spectral data on multiple varieties and genotypes

Potato virus Y (Potyviridae, PVY) is a plant virus that poses a significant threat to potato producers on a global basis. The pathogen has disrupted seed potato supplies and negatively impacted yield and quality of commercial potato crops. The potato industry currently manages PVY infection levels via insecticide applications, regional seed certification programs that rely on field scouting to visually assess individual plants for infection status, and destructive and costly tissue sampling coupled with laboratory assays. Despite these efforts, PVY continues to confound potato industry stakeholders resulting in economic harm. Remote sensing and machine learning provide for the development of new tools to more accurately detect and spatially quantify PVY-infected plants versus the current state of the art. However, there is a need to understand how the occurrence of many different potato varieties impact the dynamics of developing models to detect potato plants impacted with PVY and their potential effectiveness. This study evaluates classification modelling outcomes using spectral datasets collected in different temporal and spatial environments (greenhouse and a production field) on multiple potato varieties consisting of labelled instances of plants infected with PVY and those not infected with the virus. A modelling framework was developed to support iterative modelling runs using artificial neural network (ANN) architectures configured as binary classifiers to develop sample populations to support statistical analysis on model performance using specific spectral subsets. When using spectral data to detect PVY-infected plants, ANN models achieved the highest mean accuracy of 0.894 on a single variety. Conversely, the same ANN model architecture only achieved a mean accuracy of 0.575 on a spectral data set representing 29 potato breeding lines. Additionally, statistical analysis indicates spectral regions including the red edge, near infrared and shortwave infrared contain more important spectral features for the ANN classifier introduced in this research.

60 APPLIED LIFE SCIENCES↗

Using active learning to improve quasar identification for the DESI spectra processing pipeline

The Dark Energy Spectroscopic Instrument (DESI) survey uses an automatic spectral classification pipeline to classify spectra. QuasarNET is a convolutional neural network used as part of this pipeline originally trained using data from the Baryon Oscillation Spectroscopic Survey (BOSS). In this paper we implement an active learning algorithm to optimally select spectra to use for training a new version of the QuasarNET weights file using only DESI data, with the goal of improving classification accuracy. This active learning algorithm includes a novel outlier rejection step using a Self-Organizing Map to ensure we label spectra representative of the larger quasar sample observed in DESI. We perform two iterations of the active learning pipeline, assembling a final dataset of 5600 labeled spectra, a small subset of the approximately 1.3 million quasar targets in DESI's Data Release 1. When splitting the spectra into training and validation subsets we achieve similar performance to the previously trained weights file in completeness and purity calculated on the validation dataset but do so with less than one tenth of the amount of training data. The new weights also more consistently classify objects in the same way when used on unlabeled data compared to the old weights file. In the process of improving QuasarNET's classification accuracy we discovered a systemic error in QuasarNET's redshift estimation and used our findings to improve our understanding of QuasarNET's redshifts.

Machine learning↗