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At least 901 records · Page 50

Nodal endoplasmic reticulum, a specialized form of endoplasmic reticulum found in gravity-sensing root tip columella cells

The endoplasmic reticulum (ER) of columella root cap cells has been postulated to play a role in gravity sensing. We have re-examined the ultrastructure of columella cells in tobacco (Nicotiana tabacum) root tips preserved by high-pressure freezing/freeze-substitution techniques to gain more precise information about the organization of the ER in such cells. The most notable findings are: the identification of a specialized form of ER, termed "nodal ER," which is found exclusively in columella cells; the demonstration that the bulk of the ER is organized in the form of a tubular network that is confined to a peripheral layer under the plasma membrane; and the discovery that this ER-rich peripheral region excludes Golgi stacks, vacuoles, and amyloplasts but not mitochondria. Nodal ER domains consist of an approximately 100-nm-diameter central rod composed of oblong subunits to which usually seven sheets of rough ER are attached along their margins. These domains form patches at the interface between the peripheral ER network and the ER-free central region of the cells, and they occupy defined positions within central and flanking columella cells. Over one-half of the nodal ER domains are located along the outer tangential walls of the flanking cells. Cytochalasin D and latrunculin A cause an increase in size and a decrease in numbers of nodal ER domains. We postulate that the nodal ER membranes locally modulate the gravisensing signals produced by the sedimenting amyloplasts, and that the confinement of all ER membranes to the cell periphery serves to enhance the sedimentability of the amyloplasts in the central region of columella cells.

NASA Discipline Cell Biology↗

Using Magnetic Fields to Control Convection during Protein Crystallization: Analysis and Validation Studies

The effect of convection during the crystallization of proteins is not very well understood. In a gravitational field, convection is caused by crystal sedimentation and by solutal buoyancy induced flow and these can lead to crystal imperfections. While crystallization in microgravity can approach diffusion limited growth conditions (no convection), terrestrially strong magnetic fields can be used to control fluid flow and sedimentation effects. In this work, we develop the analysis for magnetic flow control and test the predictions using analog experiments. Specifically, experiments on solutal convection in a paramagnetic fluid were conducted in a strong magnetic field gradient using a dilute solution of Manganese Chloride. The observed flows indicate that the magnetic field can completely counter the settling effects of gravity locally and are consistent with the theoretical predictions presented. This phenomenon suggests that magnetic fields may be useful in mimicking the microgravity environment of space for some crystal growth ana biological applications where fluid convection is undesirable.

Ramachandran, N.↗

In Situ Remediation of Polychlorinated Bephenyls Using Palladium Coated Iron or Magnesium

The remediation of polychlorinated biphenyls (PCBs) and other chlorinated synthetic aromatic compounds are of great concern due to their toxicity and persistence in the environment. When released into the environment, PCBs are sorbed to particulate matter that can then disperse over large areas. Although the US Environmental Protection Agency (EPA) has banned the manufacture of PCBs since 1979, they are still present in the environment posing possible adverse health affects to both humans and animals. Thus, it is of utmost importance to develop a method that remediates PCB-contaminated soil, sediments, and water. The objective of our research was to develop an in-situ PCB remediation technique that is applicable for the treatment of soils and sediments. Previous research conducted at the University of Central Florida (UCF) proved the feasibility of using an emulsified system to dehalogenate a dense non-aqueous phase liquid (DNAPL) source, such as TCE, in the subsurface by means of an in-situ injection. The generation of a hydrophobic emulsion system drew the DNAPL TCE, through the oil membrane where it diffused to the iron particle and underwent degradation. TCE continued to enter, diffuse, degrade and exit the droplet maintaining a concentration gradient across the membrane, thus maintaining the driving force of the reaction.

Geiger, Cherie L.↗

Stoichiometry of the large conductance bacterial mechanosensitive channel of E. coli. A biochemical study

MscL, a 15 kDa transmembrane protein, is the only component involved in the formation of a 3 nS channel in the inner membrane of Escherichia coli that opens in response to mechanical or osmotic stress. While previous data had suggested that the functional MscL complex might be a hexamer, a recent crystallographic study of the MscL homologue from M. tuberculosis reveals a pentameric structure. The present work further examines the stoichiometry of the E. coli MscL using a variety of biochemical approaches. Detergent-purified 6His-MscL in solution and MscL in the membrane could be chemically crosslinked with the products displaying ladderlike patterns on SDS gels. Three crosslinking agents (EDC, DMS, and DMA) used at saturating concentrations invariably generated pentamers as the largest product. DSS produced additional bands corresponding to larger complexes although the pentamer band appeared to be the predominant product at high levels of crosslinker. It is not clear whether these extra bands reflect a difference in the crosslinking chemistry of DSS or whether its spacer arm is the longest of those used, or a combination of both facts. For the detergent-solubilized 6His-MscL both sedimentation equilibrium and gel chromatography showed the presence of multiple species. Thus the longer spacer arm could permit both intra- and intercomplex linkages. Nonetheless, the patterns obtained with all agents are consistent with and strongly suggest a pentameric organization for the MscL channel. Expression of MscL as genetically engineered double or triple subunit tandems yields low numbers of functional channels as compared to expressed monomers. The double-tandem assemblies must have an even number of subunits and crosslinking in the membrane confirmed hexamerization. Gel chromatography clearly demonstrated that the channels formed from the double tandems were larger than those formed from WT MscL, consistent with the native channel being pentameric. The observation that both double and triple tandems form channels of normal conductance implies that the pentameric assembly is to some degree independent of the number of subunit repeats in the polypeptide precursor. The channel is thus a pentameric core with the 'extra' subunits left out of the functional complex. From sedimentation equilibrium and size-exclusion chromatography, we also conclude that MscL complexes are not in a dynamic equilibrium with monomers, but are pre-assembled; and thus, their gating properties must result from changes in the conformation of the entire complex induced by the mechanical stress.

NASA Discipline Cell Biology↗

Nucleation in Synoptically Forced Cirrostratus

Formation and evolution of cirrostratus in response to weak, uniform and constant synoptic forcing is simulated using a one-dimensional numerical model with explicit microphysics, in which the particle size distribution in each grid box is fully resolved. A series of tests of the model response to nucleation modes (homogeneous-freezing-only/heterogeneous nucleation) and heterogeneous nucleation parameters are performed. In the case studied here, nucleation is first activated in the prescribed moist layer. A continuous cloud-top nucleation zone with a depth depending on the vertical humidity gradient and one of the nucleation parameters is developed afterward. For the heterogeneous nucleation cases, intermittent nucleation zones in the mid-upper portion of the cloud form where the relative humidity is on the rise, because existent ice crystals do not uptake excess water vapor efficiently, and ice nuclei (IN) are available. Vertical resolution as fine as 1 m is required for realistic simulation of the homogeneous-freezing-only scenario, while the model resolution requirement is more relaxed in the cases where heterogeneous nucleation dominates. Bulk microphysical and optical properties are evaluated and compared. Ice particle number flux divergence, which is due to the vertical gradient of the gravity-induced particle sedimentation, is constantly and rapidly changing the local ice number concentration, even in the nucleation zone. When the depth of the nucleation zone is shallow, particle number concentration decreases rapidly as ice particles grow and sediment away from the nucleation zone. When the depth of the nucleation zone is large, a region of high ice number concentration can be sustained. The depth of nucleation zone is an important parameter to be considered in parametric treatments of ice cloud generation.

Lin, R.-F.↗

Perennial Antarctic lake ice: an oasis for life in a polar desert

The permanent ice covers of Antarctic lakes in the McMurdo Dry Valleys develop liquid water inclusions in response to solar heating of internal aeolian-derived sediments. The ice sediment particles serve as nutrient (inorganic and organic)-enriched microzones for the establishment of a physiologically and ecologically complex microbial consortium capable of contemporaneous photosynthesis, nitrogen fixation, and decomposition. The consortium is capable of physically and chemically establishing and modifying a relatively nutrient- and organic matter-enriched microbial "oasis" embedded in the lake ice cover.

NASA Center ARC↗

Mapping the functional roles of cap cells in the response of Arabidopsis primary roots to gravity

The cap is widely accepted to be the site of gravity sensing in roots because removal of the cap abolishes root curvature. Circumstantial evidence favors the columella cells as the gravisensory cells because amyloplasts (and often other cellular components) are polarized with respect to the gravity vector. However, there has been no functional confirmation of their role. To address this problem, we used laser ablation to remove defined cells in the cap of Arabidopsis primary roots and quantified the response of the roots to gravity using three parameters: time course of curvature, presentation time, and deviation from vertical growth. Ablation of the peripheral cap cells and tip cells did not alter root curvature. Ablation of the innermost columella cells caused the strongest inhibitory effect on root curvature without affecting growth rates. Many of these roots deviated significantly from vertical growth and had a presentation time 6-fold longer than the controls. Among the two inner columella stories, the central cells of story 2 contributed the most to root gravitropism. These cells also exhibited the largest amyloplast sedimentation velocities. Therefore, these results are consistent with the starch-statolith sedimentation hypothesis for gravity sensing.

Non-NASA Center↗

Coastal Mudflat Accretion under Energetic Conditions, Louisiana Chenier-Plain Coast, USA

Mudflat accretion on the chenier-plain coast of Louisiana, northern Gulf of Mexico, is anomalous in an area that otherwise experiences widespread land loss due to rapid relative sea level rise. Accretion is shown to be related to energetic events (Winta cold fronts and occasional tropical-dcprrssion srmms) using a 17-year record of meteorological conditions and aerial surveys The results indicate substantial differences between the behavior of sand- and mud-dominated coastal systems under energetic conditions. Comparison of the Louisiana chenier plain to other mud-rich coasts indicates that certain conditions are necessary for mudflat accretion to occur during energetic atmospheric activity. These include an abundant supply of fine-grained fluvial sediment and resuspension events that maintain an unconsolidated sea floor, dominant onshore wind direction during energetic conditions, particularly when onshore winds coincide with high fluvial sediment input to the coastal ocean, and a low tidal range.

Draut, Amy E.↗

A Simulation Model of Carbon Cycling and Methane Emissions in Amazon Wetlands

An integrative carbon study is investigating the hypothesis that measured fluxes of methane from wetlands in the Amazon region can be predicted accurately using a combination of process modeling of ecosystem carbon cycles and remote sensing of regional floodplain dynamics. A new simulation model has been build using the NASA- CASA concept for predicting methane production and emission fluxes in Amazon river and floodplain ecosystems. Numerous innovations area being made to model Amazon wetland ecosystems, including: (1) prediction of wetland net primary production (NPP) as the source for plant litter decomposition and accumulation of sediment organic matter in two major vegetation classes - flooded forests (varzea or igapo) and floating macrophytes, (2) representation of controls on carbon processing and methane evasion at the diffusive boundary layer, through the lake water column, and in wetland sediments as a function of changes in floodplain water level, (3) inclusion of surface emissions controls on wetland methane fluxes, including variations in daily surface temperature and of hydrostatic pressure linked to water level fluctuations. A model design overview and early simulation results are presented.

Potter, Christopher↗

Large Alluvial Fans on Mars

Several dozen distinct alluvial fans, 10 to greater than 40 km long downslope are observed exclusively in highlands craters. Within a search region between 0 deg. and 30 deg. S, alluvial fan-containing craters were only found between 18 and 29 S, and they all occur at around plus or minus 1 km of the MOLA-defined Martian datum. Within the study area they are not randomly distributed but instead form three distinct clusters. Fans typically descend greater than 1 km from where they disgorge from their alcoves. Longitudinal profiles show that their surfaces are very slightly concave with a mean slope of 2 degrees. Many fans exhibit very long, narrow low-relief ridges radially oriented down-slope, often branching at their distal ends, suggestive of distributaries. Morphometric data for 31 fans was derived from MOLA data and compared with terrestrial fans with high-relief source areas, terrestrial low gradient alluvial ramps in inactive tectonic settings, and older Martian alluvial ramps along crater floors. The Martian alluvial fans generally fall on the same trends as the terrestrial alluvial fans, whereas the gentler Martian crater floor ramps are similar in gradient to the low relief terrestrial alluvial surfaces. For a given fan gradient, Martian alluvial fans generally have greater source basin relief than terrestrial fans in active tectonic settings. This suggests that the terrestrial source basins either yield coarser debris or have higher sediment concentrations than their Martian counterpoints. Martian fans and Basin and Range fans have steeper gradients than the older Martian alluvial ramps and terrestrial low relief alluvial surfaces, which is consistent with a supply of coarse sediment. Martian fans are relatively large and of low gradient, similar to terrestrial fluvial fans rather than debris flow fans. However, gravity scaling uncertainties make the flow regime forming Martian fans uncertain. Martian fans, at least those in Holden crater, apparently formed around the time of the Noachian-Hesperian boundary. We infer that these fans formed during an episode of enhanced precipitation (probably snow) and runoff, which exhibited both sudden onset and termination.

Moore, Jeffrey M.↗

A Marine Origin for the Meridiani Planum Landing Site?

The Opportunity instruments have provided compelling evidence that the sulfate-rich chemical and siliciclastic sediments at the Meridiani Planum landing site were deposited in shallow water. The local paleo-environment is most often characterized as a broad, shallow sea or large playa, with surface conditions cycling between wet and dry episodes, interbedding evaporates with eolian fine sediments [e.g., 1,2]. This particular working hypothesis is reasonable, considering the area characterized by the rover s mobility. An alternative, marine origin will be considered here, a working hypothesis that we feel provides a better fit to the local-scale results identified by Opportunity, and the regional-scale characteristics of Meridiani Planum provided by data from orbiting spacecraft, when considered together.

Parker, T. J.↗

"Smart" Magnetic Fluids Experiment Operated on the International Space Station

InSPACE is a microgravity fluid physics experiment that was operated on the International Space Station (ISS) in the Microgravity Science Glovebox from late March 2003 through early July 2003. (InSPACE is an acronym for Investigating the Structure of Paramagnetic Aggregates From Colloidal Emulsions.) The purpose of the experiment is to obtain fundamental data of the complex properties of an exciting class of smart materials termed magnetorheological (MR) fluids. MR fluids are suspensions, or colloids, comprised of small (micrometer-sized) superparamagnetic particles in a nonmagnetic medium. Colloids are suspensions of very small particles suspended in a liquid. (Examples of other colloids are blood, milk, and paint.) These controllable fluids can quickly transition into a nearly solid state when exposed to a magnetic field and return to their original liquid state when the magnetic field is removed. Controlling the strength of the magnetic field can control the relative stiffness of these fluids. MR fluids can be used to improve or develop new seat suspensions, robotics, clutches, airplane landing gear, and vibration damping systems. The principal investigator for InSPACE is Professor Alice P. Gast of the Massachusetts Institute of Technology (MIT). The InSPACE hardware was developed at the NASA Glenn Research Center. The InSPACE samples were delivered to the ISS in November 2002, on the Space Shuttle Endeavour, on Space Station Utilization Flight UF-2/STS113. Operations began on March 31, 2003, with the processing of three different particle size samples at multiple test parameters. This investigation focused on determining the structural organization of MR colloidal aggregates when exposed to a pulsing magnetic field. On Earth, the aggregates take the shape of footballs with spiky tips. This characteristic shape may be influenced by the pull of gravity, which causes most particles initially suspended in the fluid to sediment, (i.e., settle and collect at the bottom of the cell). In the absence of sedimentation effects on the ISS, the behavior and shape of these MR aggregate structures are dominated exclusively by magnetic and surface tension forces. The microscopic detail of these structures was imaged under two orthogonal camera views. The video was downlinked to the InSPACE team at Glenn's Telescience Support Center and to MIT and also recorded onboard the ISS on videotapes that will be brought back to the ground by the space shuttles. The study examined the effect on the structure formation by varying the magnetic field strength and pulse frequency, and particle size. Fundamental data that characterized the structure formation were obtained. InSPACE completed its last planned test run on July 2, 2003. Operations occurred on 21 days over approximately a 3-month period. Forty-one test points were completed during 26 test runs. During the initial testing, the procedures followed by the crew were modified to maximize the observation of some unexpected and interesting aggregate behavior. As a result Dr. Gast has reported on the formation of aggregate shapes that are more extended and diverse than those observed on the ground. Sheets of magnetic material folded over in a labyrinth pattern and large columnar aggregates with complex interfaces with the surrounding fluid are examples of the interesting structures that have been observed on the ISS. In light of these early findings, the understanding of the fundamental properties of MR fluids on the basis of ground-based observations may need to be reconsidered.The experiments on the ISS have provided a vast amount of video data for analysis. While this analysis is ongoing, plans are being made for additional experimental runs. For this purpose, additional hardware and cells containing samples of different magnetic particles and sizes are being fabricated for a future launch to the ISS. The InSPACE hardware will remain on orbit until this testing is completed.

Agui, Juan H.↗

Stability of Magnetically-Suppressed Solutal Convection In Protein Crystal Growth

The effect of convection during the crystallization of proteins is not very well understood. In a gravitational field, convection is caused by crystal sedimentation and by solutal buoyancy induced flow and these can lead to crystal imperfections. While crystallization in microgravity can approach diffusion limited growth conditions (no convection), terrestrially strong magnetic fields can be used to control fluid flow and sedimentation effects. In this work, a theory is presented on the stability of solutal convection of a magnetized fluid in the presence of a magnetic field. The requirements for stability are developed and compared to experiments performed within the bore of a superconducting magnet. The theoretical predictions are in good agreement with the experiments and show solutal convection can be stabilized if the surrounding fluid has larger magnetic susceptibility and the magnetic field has a specific structure. Discussion on the application of the technique to protein crystallization is also provided.

Leslie, F. W.↗

Chemical Mapping of Proterozoic Organic Matter at Sub-Micron Spatial Resolution

We have used a NanoSIMS ion microprobe to map sub-micron-scale distributions of carbon, nitrogen, sulfur, silicon, and oxygen in organic microfossils and laminae from the approximately 0.85 Ga Bitter Springs Formation of Australia. The data provide clues about the original chemistry of the microfossils, the silicification process, and biosignatures of specific microorganisms and microbial communities. Chemical maps of fossil unicells and filaments reveal distinct wall-and sheath-like structures enriched in C, N and S, consistent with their accepted biological origin. Surprisingly, organic laminae, previously considered to be amorphous, also exhibit filamentous and apparently compressed spheroidal structures defined by strong enrichments in C, N and S. By analogy to data from the well-preserved microfossils, these structures are interpreted as being of biological origin, most likely representing densely packed remnants of microbial mats. Because the preponderance of organic matter in Precambrian sediments is similarly "amorphous," our findings open a large body of generally neglected material to in situ structural, chemical, and isotopic study. Our results also offer new criteria for assessing biogenicity of problematic kerogenous materials and thus can be applied to assessments of poorly preserved or fragmentary organic residues in early Archean sediments and any that might occur in meteorites or other extraterrestrial samples.

Oehler, Dorothy Z.↗

Using Magnetic Field Gradients to Simulate Variable Gravity in Fluids and Materials Experiments

Fluid flow due to a gravitational field is caused by sedimentation, thermal buoyancy, or solutal buoyancy induced convection. During crystal growth, for example, these flows are undesirable and can lead to crystal imperfections. While crystallization in microgravity can approach diffusion limited growth conditions (no convection), terrestrially strong magnetic fields can be used to control fluid flow and sedimentation effects. In this work, a theory is presented on the stability of solutal convection of a magnetized fluid(weak1y paramagnetic) in the presence of a magnetic field. The requirements for stability are developed and compared to experiments performed within the bore of a superconducting magnet. The theoretical predictions are in good agreement with the experiments. Extension of the technique can also be applied to study artificial gravity requirements for long duration exploration missions. Discussion of this application with preliminary experiments and application of the technique to crystal growth will be provided.

Ramachandran, Narayanan↗

Primary Mineralogical and Chemical Characteristics of the Major K/T and Late Eocene Impact Deposits

Three well-characterized, distal impact deposits at the WT boundary and in upper Eocene sediments serve as a baseline for understanding other proposed impact deposits. All contain abundant spherules, evidence of shock metamorphism, and the largest have significant extraterrestrial components (ETCs). The K/T and the Eocene cpx-spherule (cpxS) deposits are global - likely from the events that produced the 180 km Chicxulub and 100 km Popigai craters. The Eocene North American microtektite (NAM) deposit is regional and likely from the event that produced the 45 km Chesapeake Bay crater. These deposits all contain abundant spherules formed from both shock-melted target and mixtures of target and projectile in the ejecta plume. Spherules constitute most of the mass of the distal ejecta. K/T spherules in regional deposits around the Gulf of Mexico are from low-velocity, target-rich ejecta. These can be a few mm in size and form deposits 10s of cm thick. Globally deposited KIT spherules from the plume (typically a few hundred micron size) are both target- and projectile-rich. When well preserved, the global deposits are 3 mm thick. Eocene cpxS deposits are similar to distal K/T with both target- and projectile-rich varieties (Le., glassy microtektite, and cpx spherules). They are smaller on average than WT spherules, concentrated in the 125-250 micron and smaller fractions. They are invariably bioturbated, but the initial deposit was probably less than 1 mm thick. The NAM are composed entirely of target-rich glass. They are similar in size to the cpxS. Size is an important criterion for distal ejecta because droplet size in the impact plume is proportional to the energy of the impact. Both the JUT and cpxS deposits are characterized by well-defined ETCs, commonly measured by Ir. The total Ir deposited is about 55 ng per square cm in WT sediments, and about 11 ng for the cpxS layer. This 5/1 proportion in Ir is generally consistent with the approx.1.8/1 ratio in crater diameters. The NAM have no significant ETC. This may be a function of the smaller impact. It indicates there was no significant projectile-rich plume deposit.

Kyte, Frank T.↗

Representation of Vegetation and Other Nonerodible Elements in Aeolian Shear Stress Partitioning Models for Predicting Transport Threshold

The presence of nonerodible elements is well understood to be a reducing factor for soil erosion by wind, but the limits of its protection of the surface and erosion threshold prediction are complicated by the varying geometry, spatial organization, and density of the elements. The predictive capabilities of the most recent models for estimating wind driven particle fluxes are reduced because of the poor representation of the effectiveness of vegetation to reduce wind erosion. Two approaches have been taken to account for roughness effects on sediment transport thresholds. Marticorena and Bergametti (1995) in their dust emission model parameterize the effect of roughness on threshold with the assumption that there is a relationship between roughness density and the aerodynamic roughness length of a surface. Raupach et al. (1993) offer a different approach based on physical modeling of wake development behind individual roughness elements and the partition of the surface stress and the total stress over a roughened surface. A comparison between the models shows the partitioning approach to be a good framework to explain the effect of roughness on entrainment of sediment by wind. Both models provided very good agreement for wind tunnel experiments using solid objects on a nonerodible surface. However, the Marticorena and Bergametti (1995) approach displays a scaling dependency when the difference between the roughness length of the surface and the overall roughness length is too great, while the Raupach et al. (1993) model's predictions perform better owing to the incorporation of the roughness geometry and the alterations to the flow they can cause.

King, James↗

Erosion Rates at the Mars Exploration Rover Landing Sites and Long-Term Climate Change on Mars

Erosion rates derived from the Gusev cratered plains and the erosion of weak sulfates by saltating sand at Meridiani Planum are so slow that they argue that the present dry and desiccating environment has persisted since the Early Hesperian. In contrast, sedimentary rocks at Meridiani formed in the presence of groundwater and occasional surface water, and many Columbia Hills rocks at Gusev underwent aqueous alteration during the Late Noachian, approximately coeval with a wide variety of geomorphic indicators that indicate a wetter and likely warmer environment. Two-toned rocks, elevated ventifacts, and perched and undercut rocks indicate localized deflation of the Gusev plains and deposition of an equivalent amount of sediment into craters to form hollows, suggesting average erosion rates of approx.0.03 nm/yr. Erosion of Hesperian craters, modification of Late Amazonian craters, and the concentration of hematite concretions in the soils of Meridiani yield slightly higher average erosion rates of 1-10 nm/yr in the Amazonian. These erosion rates are 2-5 orders of magnitude lower than the slowest continental denudation rates on Earth, indicating that liquid water was not an active erosional agent. Erosion rates for Meridiani just before deposition of the sulfate-rich sediments and other eroded Noachian areas are comparable with slow denudation rates on Earth that are dominated by liquid water. Available data suggest the climate change at the landing sites from wet and likely warm to dry and desiccating occurred sometime between the Late Noachian and the beginning of the Late Hesperian (3.7-3.5 Ga).

weathering↗