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NASA NTRS1994

Computational Approaches to Vestibular Research

The Biocomputation Center at NASA Ames Research Center is dedicated to a union between computational, experimental and theoretical approaches to the study of neuroscience and of life sciences in general. The current emphasis is on computer reconstruction and visualization of vestibular macular architecture in three-dimensions (3-D), and on mathematical modeling and computer simulation of neural activity in the functioning system. Our methods are being used to interpret the influence of spaceflight on mammalian vestibular maculas in a model system, that of the adult Sprague-Dawley rat. More than twenty 3-D reconstructions of type I and type II hair cells and their afferents have been completed by digitization of contours traced from serial sections photographed in a transmission electron microscope. This labor-intensive method has now been replace d by a semiautomated method developed in the Biocomputation Center in which conventional photography is eliminated. All viewing, storage and manipulation of original data is done using Silicon Graphics workstations. Recent improvements to the software include a new mesh generation method for connecting contours. This method will permit the investigator to describe any surface, regardless of complexity, including highly branched structures such as are routinely found in neurons. This same mesh can be used for 3-D, finite volume simulation of synapse activation and voltage spread on neuronal surfaces visualized via the reconstruction process. These simulations help the investigator interpret the relationship between neuroarchitecture and physiology, and are of assistance in determining which experiments will best test theoretical interpretations. Data are also used to develop abstract, 3-D models that dynamically display neuronal activity ongoing in the system. Finally, the same data can be used to visualize the neural tissue in a virtual environment. Our exhibit will depict capabilities of our computational approaches and some of our findings from their application. For example, our research has demonstrated that maculas of adult mammals retain the property of synaptic plasticity. Ribbon synapses increase numerically and undergo changes in type and distribution (p<0.0001) in type II hair cells after exposure to microgravity for as few as nine days. The finding of macular synaptic plasticity is pertinent to the clinic, and may help explain some. balance disorders in humans. The software used in our investigations will be demonstrated for those interested in applying it in their own research.

Ross, Muriel D.↗
NASA NTRS2001

Investigation of Conjugate Heat Transfer in Turbine Blades and Vanes

We report on work carried out to develop a 3-D coupled Finite Volume/BEM-based temperature forward/flux back (TFFB) coupling algorithm to solve the conjugate heat transfer (CHT) which arises naturally in analysis of systems exposed to a convective environment. Here, heat conduction within a structure is coupled to heat transfer to the external fluid which is convecting heat into or out of the solid structure. There are two basic approaches to solving coupled fluid structural systems. The first is a direct coupling where the solution of the different fields is solved simultaneously in one large set of equations. The second approach is a loose coupling strategy where each set of field equations is solved to provide boundary conditions for the other. The equations are solved in turn until an iterated convergence criterion is met at the fluid-solid interface. The loose coupling strategy is particularly attractive when coupling auxiliary field equations to computational fluid dynamics codes. We adopt the latter method in which the BEM is used to solve heat conduction inside a structure which is exposed to a convective field which in turn is resolved by solving the NASA Glenn compressible Navier-Stokes finite volume code Glenn-HT. The BEM code features constant and bi-linear discontinuous elements and an ILU-preconditioned GMRES iterative solver for the resulting non-symmetric algebraic set arising in the conduction solution. Interface of flux and temperature is enforced at the solid/fluid interface, and a radial-basis function scheme is used to interpolated information between the CFD and BEM surface grids. Additionally, relaxation is implemented in passing the fluxes from the conduction solution to the fluid solution. Results from a simple test example are reported.

Kassab, A. J.↗
NASA NTRS2001

Temperature Humidity and Sea Level Pressure Increments Induced by 1DVAR Analysis of GPS Refractivity

The Global Positioning System (GPS) transmitted signals are affected by the atmosphere. Using the radio occultation technique, where a receiver is placed on a low-Earth-orbiting platform. it is possible to perform soundings. by measuring the bending angles of the rays. The information can be converted into atmospheric refractivity. We have developed a one dimensional variational (1DVAR) analysis that uses GPS/MET 1995 refractivity and 6-hour FVDAS (Finite Volume Data Assimilation System) forecasts as background information to constrain the retrievals. The analysis increments are defined as 1DVAR minus background temperature, humidity and sea level pressure. Before assimilating the 1DVAR profiles into the FVDAS. the increments need to be understood. First, some bias could be induced in the retrievals when confronted with actual biased data: second. bias in the back-round could create undesired bias in the retrievals. Anv bias in the analyses will ultimately change the climatology of the model the retrievals will be assimilated into. We relate the increments to the reduction of the difference between observed minus computed refractivity profiles. We also point out the difference in the mean increments using backgrounds which have assimilated either NESDIS TIROS Operational Vertical Sounder (TOVS) operational retrievals or Data Assimilation Office (DAO) TOVS interactive retrievals. The climatology of the model in terms of refractivity is significantly different and this impacts the GPS 1DVAR increments. This testifies that changing the basic load of assimilated data has an influence on the impact the GPS data may have in a DAS.

Poli, Paul↗
NASA NTRS2001

Evaluation of Stratospheric Transport in New 3D Models Using the Global Modeling Initiative Grading Criteria

The Global Modeling Initiative (GMI) Team developed objective criteria for model evaluation in order to identify the best representation of the stratosphere. This work created a method to quantitatively and objectively discriminate between different models. In the original GMI study, 3 different meteorological data sets were used to run an offline chemistry and transport model (CTM). Observationally-based grading criteria were derived and applied to these simulations and various aspects of stratospheric transport were evaluated; grades were assigned. Here we report on the application of the GMI evaluation criteria to CTM simulations integrated with a new assimilated wind data set and a new general circulation model (GCM) wind data set. The Finite Volume Community Climate Model (FV-CCM) is a new GCM developed at Goddard which uses the NCAR CCM physics and the Lin and Rood advection scheme. The FV-Data Assimilation System (FV-DAS) is a new data assimilation system which uses the FV-CCM as its core model. One year CTM simulations of 2.5 degrees longitude by 2 degrees latitude resolution were run for each wind data set. We present the evaluation of temperature and annual transport cycles in the lower and middle stratosphere in the two new CTM simulations. We include an evaluation of high latitude transport which was not part of the original GMI criteria. Grades for the new simulations will be compared with those assigned during the original GMT evaluations and areas of improvement will be identified.

Strahan, Susan E.↗
NASA NTRS2001

Comparison of the Variability of Constituents from a 3D Simulation with Observations in the Tropics

Fields from chemical transport models (CTMs) driven by assimilated winds have been shown to represent many aspects of observations at middle and high latitudes. Comparisons of modeled fields with observations have been much poorer in the tropics. Noise in the tropical winds produces variability in constituents in the tropics that greatly exceeds what is observed, Constituent gradients between the tropics, subtropics and middle latitudes are weaker than observed in the lower stratosphere. Tropical transport is shown to be much more realistic using a CTM driven by winds from the assimilation system that has recently been developed by the Data Assimilation Office at Goddard Space Flight Center. The Finite Volume Community Climate Model (FV-CCM), a general circulation model model that uses the NCAR CCM physics and the Lin and Rood dynamical core, is at the core of the new assimilation system. Realistic transport in the tropics, particularly troposphere to stratosphere exchange, is an obvious requirement for realistic representation of the stratosphere to troposphere transport of ozone and other stratospheric constituents to the middle latitude upper troposphere.

Douglass, A. R.↗
NASA NTRS1995

Fractional Step and Pseudocompressibility Methods for the Solution of Incompressible Navier-Stokes Equations

The fractional step and the pseudocompressibility methods for the solution of the incompressible Navier-Stokes equations are outlined. The fractional step method is based on finite-volume formulation and uses the pressure and the volume fluxes across the faces of each cell as dependent variables. The momentum equations are solved implicitly and the Poisson equation for the pressure is solved by using the multigrid method. The pseudocompressibility approach uses an implicit-higher-order-upwind differencing scheme for the convective terms together with the Gauss-Seidel line relaxation method. The dependent variables in the pseudocompressibility approach are the pressure and the cartesian velocity components in unstaggered mesh orientation. The 90-degree square duct flow, the wing-tip vortex wake flow and unsteady turbulent flows over an oscillating NACA 0015 airfoil are computed using both the fractional step and the pseudocompressibility methods. The results obtained from two different schemes are compared against experimental measurements.

Kiris, Cetin↗
NASA NTRS1995

Supersonic Transport Analysis on the IBM Parallel System SP2

Several studies of supersonic transport (SST) configurations have been undertaken by members of the High Speed Aerodynamics branch at NASA Ames. These computational investigations involved the analysis of shapes to study the sonic boom signatures, aerodynamic performance characteristics, as well as studies of nacelle/airframe integration. A variety of different computer codes were employed including both structured and unstructured codes. The AIRPLANE code has been used extensively in these investigations. This computer code solves the Euler equations for inviscid flow by exploiting an explicit finite volume method on a mesh of tetrahedral cells. AIRPLANE is capable of handling complete aircraft configurations including nacelles and diverters. An example of a generic SST configuration is shown and a comparison of computed and experimental force coefficients is presented. Most of the computations in support of the SST investigations have been run on the YMP and C-90 computers currently installed at NASA Ames. Additional information is contained in the original extended abstract.

Jameson, Antony↗
NASA NTRS2001

Incorporation of Condensation Heat Transfer in a Flow Network Code

In this paper we have investigated the condensation of water vapor in a short tube. A numerical model of condensation heat transfer was incorporated in a flow network code. The flow network code that we have used in this paper is Generalized Fluid System Simulation Program (GFSSP). GFSSP is a finite volume based flow network code. Four different condensation models were presented in the paper. Soliman's correlation has been found to be the most stable in low flow rates which is of particular interest in this application. Another highlight of this investigation is conjugate or coupled heat transfer between solid or fluid. This work was done in support of NASA's International Space Station program.

Anthony, Miranda↗
NASA NTRS2001

Evaluation of Tropical Transport in a Global Chemistry and Transport Model

Observations of constituents from satellite, aircraft and sondes can be utilized to develop diagnostics of various aspects of tropical transport. These include tropical mid-latitude isolation, the seasonal transport from the upper tropical troposphere to the mid-latitude lowermost stratosphere, the seasonal cycle of the tropical total ozone and its variability. These diagnostics will be applied to constituent fields from an off-line chemistry and transport model (CTM) driven by winds from two sources. These are the Finite Volume Community Climate Model (FV-CCM), a general circulation model that uses the NCAR CCM physics and the Lin and Rood dynamical core, and an assimilation system developed by the Data Assimilation Office at the Goddard Space Flight Center that uses the FV-CCM at its core. Signatures of the quasi-biennial oscillation present in the observations will be emphasized to understand differences between the two model transports and the transport inferred from the observations.

Douglass, Anne R.↗
NASA NTRS2001

GCM Simulation of the Large-scale North American Monsoon Including Water Vapor Tracer Diagnostics

The geographic sources of water for the large-scale North American monsoon in a GCM are diagnosed using passive constituent tracers of regional water'sources (Water Vapor Tracers, WVT). The NASA Data Assimilation Office Finite Volume (FV) GCM was used to produce a 10-year simulation (1984 through 1993) including observed sea surface temperature. Regional and global WVT sources were defined to delineate the surface origin of water for precipitation in and around the North American i'vionsoon. The evolution of the mean annual cycle and the interannual variations of the monsoonal circulation will be discussed. Of special concern are the relative contributions of the local source (precipitation recycling) and remote sources of water vapor to the annual cycle and the interannual variation of warm season precipitation. The relationships between soil water, surface evaporation, precipitation and precipitation recycling will be evaluated.

Bosilovich, Michael G.↗
NASA NTRS2002

Assessment of the Unstructured Grid Software TetrUSS for Drag Prediction of the DLR-F4 Configuration

An application of the NASA unstructured grid software system TetrUSS is presented for the prediction of aerodynamic drag on a transport configuration. The paper briefly describes the underlying methodology and summarizes the results obtained on the DLR-F4 transport configuration recently presented in the first AIAA computational fluid dynamics (CFD) Drag Prediction Workshop. TetrUSS is a suite of loosely coupled unstructured grid CFD codes developed at the NASA Langley Research Center. The meshing approach is based on the advancing-front and the advancing-layers procedures. The flow solver employs a cell-centered, finite volume scheme for solving the Reynolds Averaged Navier-Stokes equations on tetrahedral grids. For the present computations, flow in the viscous sublayer has been modeled with an analytical wall function. The emphasis of the paper is placed on the practicality of the methodology for accurately predicting aerodynamic drag data.

Pirzadeh, Shahyar Z.↗
NASA NTRS2002

Assimilation of Cloud- and Land-affected TOVS/ATOVS Level 1b data at DAO

Despite significant advances in the assimilation of TIROS Operational Vertical Sounder/Advanced TIROS Operational Vertical Sounder (TOVS)/(ATOVS) data over the last decade, there are still many unresolved issues. For example, at several centers, cloud-and land-affected TOVS data are not assimilated. In this study, we show positive impact from the use of cloud cleared and land-affected TOVS data in the NASA Data Assimilation Office's (DAO) Finite Volume Data Assimilation System (fv-DAS). We will discuss how treatment of TOVS data affects the stratosphere and tropopause in the fvDAS. We will also describe the use of TOVS data for land-surface analysis and assimilation and other developments regarding the use of TOVS data at the DAO.

Joiner, Joanna↗
NASA NTRS2002

Plans for Assimilating AQUA data at NASA's DAO

NASA's Data Assimilation Office (DAO) is expanding its work with TIROS Operational Vertical Sounder (TOVS) to assimilate data from the advanced instruments which will fly on NASA's AQUA satellite in early 2002. The Atmospheric Infrared Sounder (AIRS), which has over 2000 channels, together with the Advanced Microwave Sounding Unit-A (AMSU-A) and the Humidity Sounder Brazil (HSB) will provide many technical challenges for data assimilation centers. One of the primary concerns is how best to subset the data in order to efficiently extract information about the Earth's atmosphere and surface. This includes static and dynamic channel selection as well as pixel thinning. The DAO is currently experimenting with simulated AIRS/AMSU/HSB radiances within the framework of our finite volume data assimilation system (NDAS) using the OPTRAN radiative transfer code developed as part of the NOAA/NASA Joint Center for Satellite Data Assimilation. The short-term goals include the assessment of the cost of processing various data subsets and preparation for near-real-time assimilation within a few months of launch. We will also discuss plans and tools for evaluating the quality of AIRS data including radiances and level 2 products from the AIRS science team.

Frank, Donald↗
NASA NTRS1995

Blocked Grid Technologies as Applied to Aerodynamic Configurations

The advantages and disadvantages of the blocked grid methodology are discussed using results from ENSAERO, CNS, and CNS-FV. The first two codes are based on finite differences and the last on cell-centered finite volume formulation. Techniques that enhance the utility of the blocked (or patched) grid methodology are described. These techniques include mesh discontinuous zonal interfaces, sliding zonal interfaces, fast search procedures, and virtual zones. All of these methods are designed with two goals; namely extend the use of patched grids to unsteady aerodynamics, e.g. oscillating control flaps, and provide the user more flexibility in the grid topologies available for gridding complex aerodynamic configurations. For example, the use of virtual zones allows the user the choice of using one grid topology for surface grids, and another for the volume grids. This additional flexibility has a large impact in the amount of calendar time required to block and grid a complex aerodynamic configuration. Several examples are shown demonstrating the new features. Other issues involving grid generation are also discussed. In particular the existing problems of defining grid quality measures which are relevant are also described.

Klopfer, Goetz↗
NASA NTRS1996

Challenges and Accomplishments of Viscous Incompressible Flow Computations in Aerospace and Beyond

Recent progress in incompressible Navier-Stokes solution methods will be presented. Discussions are focused on the methods designed for complex geometry applications in three dimensions, and thus are limited to primitive variable formulation. Both steady- and unsteady-solution algorithms and their salient features are discussed. A summary of our recent progress in flow solver development is given followed by numerical studies of a few example problems of our current interest. Solvers discussed here are based on structured-grid approach using finite-difference or finite-volume frame work. This short course will be delivered in three one-our lectures. The material in the course are collected from the work performed by the Incompressible Navier-Stokes group at NASA Ames Research Center over the past several years, and can be found in our publications widely disseminated in the US and abroad. This short course is sponsored by AGARD Consultant and Exchange Program under Support Project P-110.

Kwak, Dochan↗
NASA NTRS1999

On Europa's Magnetospheric Interaction: A MHD Simulation of the E4 Flyby

The global three-dimensional interaction of Europa with the Jovian magnetosphere is modeled by using a complete set of ideal magnetohydrodynamic (MHD) equations. The model accounts for exospheric mass loading, ion-neutral charge exchange, recombination, and a possible intrinsic dipole magnetic field of Europa. The single-fluid MHD equations are solved by using a modem, finite volume, higher-order, Godunov-type method on an adoptively refined unstructured grid, which allows detailed modeling of the region near Europa while still resolving both the upstream region and the satellite's wake. The magnetic field and plasma density measured during Galileo's EGA flyby of December 19, 1996, are reproduced reasonably well in the simulation. We find the agreement between the data and our model particularly convincing if we assume that the plasma velocity during the EGA flyby deviated from the nominal corotation direction by approximately 20 deg. Evidence from the Galileo energetic particle detector also supports this assumption. In this case, we can fit the data using a dipole with orientation close to that of an induced dipole arising from the interaction of a hypothetical conducting subsurface layer on Europa with the periodically changing magnetic field of Jupiter. However, the magnitude of the dipole in our model is somewhat smaller (70%) than that suggested by Khurana et al. The total mass loading and ion-neutral charge exchange rates are consistent with the estimates of Europa's atmosphere and ionosphere.

Kabin, K.↗
NASA NTRS2000

Two-Species, 3D, MHD Simulation of Europa's Interaction with Jupiter's Magnetosphere

The interaction of Europa with the Jovian a magnetosphere has been studied by using a two species in ideal magnetohydrodynamic (MHD) numerical model. This model considers the upstream plasma in the Jovian magnetosphere and the molecular oxygen ions in the ionosphere of Europa, separately. We present results a from simulation studies, which take into account impact ionization, recombination, and the effect of a possible induced dipole magnetic field of Europa. The total mass loading of the magnetospheric flow and the ionization frequency used in the model are consistent with the estimates of Europa's ionosphere and atmosphere. The multi-species MHD equations are solved by using a finite volume, high-order, Godunov-type method on an adoptively refined unstructured grid, which allows a detailed modeling of the region near Europa's surface, while still resolving both the upstream region and the satellite's wake. We have paid special attention to the wake of Europa, in order to be able to make comparisons with the Galileo's E4 flyby observations, as well as other model calculations. The calculated escape flux of a O2+ down the tail was found to be about 5.6 x 10(exp 25) s(sup -1).

Liu, Yifan↗
NASA NTRS2001

High-Performance Java Codes for Computational Fluid Dynamics

The computational science community is reluctant to write large-scale computationally -intensive applications in Java due to concerns over Java's poor performance, despite the claimed software engineering advantages of its object-oriented features. Naive Java implementations of numerical algorithms can perform poorly compared to corresponding Fortran or C implementations. To achieve high performance, Java applications must be designed with good performance as a primary goal. This paper presents the object-oriented design and implementation of two real-world applications from the field of Computational Fluid Dynamics (CFD): a finite-volume fluid flow solver (LAURA, from NASA Langley Research Center), and an unstructured mesh adaptation algorithm (2D_TAG, from NASA Ames Research Center). This work builds on our previous experience with the design of high-performance numerical libraries in Java. We examine the performance of the applications using the currently available Java infrastructure and show that the Java version of the flow solver LAURA performs almost within a factor of 2 of the original procedural version. Our Java version of the mesh adaptation algorithm 2D_TAG performs within a factor of 1.5 of its original procedural version on certain platforms. Our results demonstrate that object-oriented software design principles are not necessarily inimical to high performance.

Riley, Christopher↗