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DOE OSTI2021

Linking resource availability to pantropical forest canopy resistance and resilience to cyclone disturbance

Statement of purpose: Tropical cyclones are intensifying and occurring at higher latitudes in recent decades, but the mechanisms underpinning the resistance (ability to withstand disturbance-induced change) and resilience (pace of return to pre-disturbance reference values) of tropical forests to cyclones remains largely unexplored at the pantropical scale. We conducted a meta-analysis to investigate the role of soil resource availability (i.e., total soil phosphorus concentration) in mediating site-level forest canopy resistance and resilience to cyclones pan-tropically. We evaluated cyclone-induced and post-cyclone litterfall mass (g/m2/day), phosphorus (P) and nitrogen (N) fluxes (mg/m2/day), as well as concentrations (mg/g) across 73 case studies in Australia, Guadeloupe, Hawaii, Mexico, Puerto Rico, and Taiwan. The dataset zip file includes three data and two metadata files: - The compiled Litterfall Mass Flux data from tropical forests across the globe prior to and after varying tropical cyclone disturbances are provided in Litterfall_Mass.csv. This data file also includes site location, geographical characteristics, elevation, soil phosphorus concentration, geology, and several variables related to each tropical cyclone disturbance. - The compiled Litterfall Nitrogen and Phosphorus Flux data from tropical forests across the globe prior to and after varying tropical cyclone disturbances are provided in Litterfall_Nutrients.csv. This data file also includes site location, geographical characteristics, elevation, soil phosphorus concentration, geology, and several variables related to each tropical cyclone disturbance. - Tropical cyclone track data compiled from HURDAT2 and IBTrACS databases and used as input in the HURRECON model (https://github.com/hurrecon-model/HurreconR) to generate wind data is provided in hurdat2-1851-2019-052520.txt. - The metadata file (Metadata_Meta-analysis_Litterfall-Mass.pdf) has the complete information on each variable included in the Litterfall_Mass.csv dataset, the data sources, and data processing information. - The metadata file (Metadata_Meta-analysis_Litterfall-Nutrients.pdf) has the complete information on each variable included in the Litterfall_Nutrients.csv dataset, the data sources, and data processing information.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

LAI, EVI, NDVI, and kNDVI in 23 pantropical forests affected by 21 cyclones

Statement of purpose: Cyclones alter the function and composition of tropical forests, making effects of intensifying cyclones on carbon-rich forests a critical topic of study. Here, we quantified cyclone-induced damage and recovery of 21 cyclone disturbances affecting 23 pantropical forest sites between 1988-2017 utilizing leaf area index (LAI), enhanced vegetation index (EVI), normalized difference vegetation index (NDVI), and transformed NDVI (kNDVI) values from Google Earth Engine. Field observations collected in a meta-analysis (Bomfim et al., 2022, in review) were used to ground-truth and test effects of soil resource availability and disturbance factors on damage and recovery. This meta-analysis also served as the basis to begin vegetation index extraction, utilizing unique site and date combinations, from tropical forests effect by cyclone disturbances. We began collecting NDVI (5km resolution) from the NOAA Climate Data Record (CDR) of AVHRR Normalized Difference Vegetation Index (NDVI), Version 5 data product (Vermote, 2019) for all case studies included, 42. Next, we began extracting Landsat data from Landsat 4, 5, and 8, courtesy of the U.S. Geological Survey, in search of higher resolution data. We selected a 3 by 3 Landsat pixel area, leading to a 90m resolution data extraction. The specific imagery used includes Landsat 4 USGS Landsat 4 TM Collection 1 Tier 1 TOA (top of atmosphere) Reflectance, Landsat 5 USGS Landsat 5 TM (thematic mapper) Collection 1 Tier 1 TOA Reflectance, and Landsat 8 USGS Landsat 8 Collection 1 Tier 1 TOA Reflectance. Within Google Earth Engine, we selected the date and location (latitude and longitude), calculated NDVI, kNDVI, and EVI utilizing Landsat bands (see metadata_NGEE-tropics_cyclones), and extracted post- and pre-cyclone values for each case study to calculate cyclone-induced change in the vegetative index. Due to limited spatial resolution of Landsat remote sensing data, MODIS products were investigated next. First, the MOD13Q1.006 Terra Vegetation Indices 16-Day Global 250m product was used to extract 250m EVI and NDVI (Didan, 2015) and then the MCD15A3H.006 MODIS Leaf Area Index/FPAR 4-Day Global 500m product product was used to extract LAI 500m (Myneni et al., 2015). Pre- and post-cyclone values, change in the vegetative index, and standard deviation for all values are included in the main csv (see case_study_data.csv) for all vegetative indices collected, including LAI 500m, EVI 250m, NDVI 250m, NDVI 90m, kNDVI 90m, EVI 90m, and NDVI 5km. Lastly, recovery values were calculated utilizing a standardization method (see metadata_NGEE-tropics_cyclones) and recovery values for MODIS (see MODIS_recovery.csv) and Landsat (Landsat_recovery.csv) data are included.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2016

AmeriFlux US-Blo Blodgett Forest

This is the AmeriFlux version of the carbon flux data for the site US-Blo Blodgett Forest. Site Description - The flux tower site at Blodgett Forest is on a 1200 ha parcel of land owned by Sierra Pacific Industries in the Sierra Nevada range near Georgetown, California. The field site was established in May 1997 with continuous operation since May 1999. The site is situated in a ponderosa pine plantation, mixed-evergreen coniferous forest, located adjacent to Blodgett Forest Research Station. The Mediterranean-type climate of California is characterized by a protracted summer drought, with precipitation occurring mainly from October through May. The infrastructure for the ecosystem scale flux measurements includes a walkup measurement tower, two temperature controlled instrument buildings, and an electrical generation system powered by a diesel generator. Typical wind patterns at the site include upslope flow during the day (from the west) and downslope flow at night (from the east). The plantation is relatively flat, and contains a homogenous mixture of evenly aged ponderosa pine with other trees and shrubs scattered throughout the ecosystem making up less than 30% of the biomass. The daytime fetch for the tower measurements extends approximately 200 m to the southwest of the tower (this region contributes ~90% of the daytime flux), thus remote sensing images to be used for modeling should probably be centered approximately 100 m from the tower at an angle of 225 deg.

Goldstein, Allen↗
DOE OSTI2016

AmeriFlux US-Ha2 Harvard Forest Hemlock Site

This is the AmeriFlux version of the carbon flux data for the site US-Ha2 Harvard Forest Hemlock Site. Site Description - The forest surrounding the Hemlock site has remained pristine with two exceptions. In the early to mid-1700s, European settlers cleared the majority of the forest for agricultural purposes. Selective harvesting of hemlock and chestnut trees occurred up until the early 1900s, when the chestnut blight killed all of the chestnut trees. In the current forest, about 83% of the total basal area of trees is hemlock. The remainder is equally divided between eastern white pine (Pinus strobus L.) and deciduous species, including red maple (Acer rubrum), red oak (Quercus rubra) and black birch (Betula lenta). A very thick organic layer (10-20 cm or more) covers the soil surface, and highly decayed coarse woody debris is abundant.

Hadley, Julian↗
DOE OSTI2021

AmeriFlux MX-Aog Alamos Old-Growth tropical dry forest

This is the AmeriFlux version of the carbon flux data for the site MX-Aog Alamos Old-Growth tropical dry forest. Site Description - This tower is located at a patch of remnant old growth tropical dry forest where the dominant vegetation are leguminous trees and a notorious presence of the genus Brusera. The site is at about 18 km from the municipality of Alamos Sonora Mexico within a private ranch managed by the NGO Nature Culture International. The area is also within a federally protected land named “Area de Proteccion de Flora y Fauna Sierra de Alamos Rio-Cuchijaqui" in the catalog of the “Comision Nacional de Areas Naturales Protegidas (CONANP-Mexico)”. The preserved ranch is surrounded by a mosaic of forest patches with different successional stages of tropical dry forest, and some places that are used for local agriculture and livestock. This ecosystem lies in a highly seasonal region under the influence of the North American Monsoon that brings about 70% of the rains from July to September.

Yepez, Enrico A.↗
DOE OSTI2021

AmeriFlux US-MWF Kellogg Experimental Forest

This is the AmeriFlux version of the carbon flux data for the site US-MWF Kellogg Experimental Forest. Site Description - 716 acre mixed forest site managed by Michigan State University since 1932. The forest is a mix of maple, oak and pine, but other tree species are present. Site was chosen to represent managed forests in the Kalamzoo River watershed.

Chen, Jiquan↗
DOE OSTI2022

AmeriFlux FLUXNET-1F US-Ha1 Harvard Forest EMS Tower (HFR1)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Ha1 Harvard Forest EMS Tower (HFR1). This is the FLUXNET version of the carbon flux data for the site US-Ha1 Harvard Forest EMS Tower (HFR1) produced by applying the standard ONEFlux (1F) software. Site Description - The Harvard Forest tower is on land owned by Harvard University. The site is designated as an LTER site. Most of the surrounding area was cleared for agrigulture during European settlement in 1600-1700. The site has been regrowing since before 1900 (based on tree ring chronologies) and is now predominantly red oak and red maple, with patches of mature hemlock stand and individual white pine. Overstory trees were uprooted by hurricane in 1938. Climate measurements have been made at Harvard Forest since 1964.

Munger, J. William↗
DOE OSTI2022

AmeriFlux US-Cst Crossett Experimental Forest

This is the AmeriFlux version of the carbon flux data for the site US-Cst Crossett Experimental Forest. Site Description - The study takes place in the Crossett Experimental Forest (CEF, 32°2′ N, 91°57′ W), which was established in 1934 with the objective of developing effective management protocols for loblolly and shortleaf pine forests in the Gulf Coastal Plain. Mean annual temperature and precipitation are 17.6 °C and 1,410 mm, respectively. Most of the soils on and near the CEF are silt loams (primarily Glossaquic Fragiudalfs). The tower is situated in the the old-growth pine management sector of the CEF, which emphasizes management for old-growth-like conditions, with the goal of emulating the structural and compositional attributes of historic forests from this region using a combination of timber harvesting, prescribed fire, and other tools. This includes periodic commercial logging of intermediate-sized loblolly pines to support further restoration treatments, such as prescribed fire, hardwood and exotic species competition control, and the increase of plant species more compatible with fire (e.g., shortleaf pine and understory grasses)

Novick, Kim↗
DOE OSTI2026

AmeriFlux FLUXNET-1F PR-xGU NEON Guanica Forest (GUAN)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site PR-xGU NEON Guanica Forest (GUAN). This is the FLUXNET version of the carbon flux data for the site PR-xGU NEON Guanica Forest (GUAN) produced by applying the standard ONEFlux (1F) software. Site Description - The Guanica Forest (GUAN) site is located on the southwest corner of the main island of Puerto Rico in a protected forest with primary phenological species of Gymnanthes lucida, Pisonia albida, and Bursera simaruba. The mean canopy height is approximately 10 m.

Network), NEON (National Ecological Observatory [N↗
DOE OSTI2018

Sap flux measurements in wet tropical forests: unique challenges and opportunities

Tropical rainforests often have great tree species and functional diversity, complex age and stand structure, deep active sapwood, and potential factors that reduce transpiration, such as frequent cloud cover and wet leaves. Such factors generate challenges for estimating transpiration from sap flux measurements. In fact, upscaling approaches have rarely been attempted for diverse tropical forests. Thus, the objective of this paper is to build upon past efforts to scale transpiration and optimize strategies for wet tropical forests. Over a five-year period, we instrumented 44 trees with heat dissipation sap flow sensors within a premontane wet tropical rainforest in Costa Rica (5000 mm MAP). Given high diversity, few instrumented trees belonged to the same species, genus, or even family. In a subset of trees, radial profiles across the full range of active xylem were examined. Measurements were scaled to the stand in two plots using sapwood area. In association with extensive micrometeorological measurements, only ~10% of rainfall was transpired from this forested watershed due to persistent low radiation, evaporative demand, and frequent wet canopy conditions. Contrary to temperate trees, we observed minimal flow reductions in deeper sapwood among the largest trees, whose water use amounted to nearly 80% of the total stand water use, even though they contributed less than 15% to total stand basal area. We found that transpiration was suppressed when leaves were wet, even after accounting for lower vapor pressure deficit and reduced solar radiation. Since soil moisture conditions at this site remain continually above deficit levels, flow reversal has been assumed to be minor and thus has not yet been investigated. The driest month on record resulted in higher, not lower transpiration. Given the high diversity of these forests, herein we propose practical and innovate approaches to group trees by function or degree of canopy exposure. Finally, these efforts are critical for accurate scaling of measurements from individual sensors to stands and for improving global land surface models that increasingly partition canopy components to better represent these functionally and structurally diverse ecosystems.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2017

Terrestrial Ecosystem Science 2017 ECRP Annual Report: Tropical Forest Response to a Drier Future: Turnover Times of Soil Organic Matter, Roots, Respired CO 2 , and CH 4 Across Moisture Gradients in Time and Space

The overall goal of my Early Career research is to constrain belowground carbon turnover times for tropical forests across a broad range in moisture regimes. My group is using 14C analysis and modeling to address two major objectives: quantify age and belowground carbon turnover times across tropical forests spanning a moisture gradient from wetlands to dry forest; and identify specific areas for focused model improvement and data needs through site-specific model-data comparison and belowground carbon modeling for tropic forests.

58 GEOSCIENCES↗
DOE OSTI2024

Methane dynamics described through vegetation-soil interactions in bald cypress and other bottomland hardwood forests

Past estimates of CH4 fluxes from forested swamps ranged from 10 to 106 mg C m-2 d-1 in temperate regions and 44 to144 mg C m-2 d-1 in subtropical and tropical regions. However, climate change could alter these rates in wetlands where efflux is predominantly controlled by water level, temperature, and plant composition. While the Lower Mississippi Alluvial Valley has experienced the largest loss of forested wetlands in the U.S, supporting 21 to 25 million acres of bottomland hardwoods before European settlement, an estimated 5 million acres remain. This landscapes remain under-studied from a CH4 flux perspective, particularly in determining woody vegetation contributions to landscape CH4 emissions. Our overarching objective are to (1) improve our understanding of the controls on CH4 fluxes in forested mineral soil wetlands, and (2) to better understand the effects of landscape position and forest composition on the CH4 fluxes between terrestrial ecosystems and the atmosphere. Our main goal is to elucidate the

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

Roots Mediate the Effects of Snowpack Decline on Soil Bacteria, Fungi, and Nitrogen Cycling in a Northern Hardwood Forest

Rising winter air temperature will reduce snow depth and duration over the next century in northern hardwood forests. Reductions in snow depth may affect soil bacteria and fungi directly, but also affect soil microbes indirectly through effects of snowpack loss on plant roots. We incubated root exclusion and root ingrowth cores across a winter climate-elevation gradient in a northern hardwood forest for 29 months to identify direct (i.e., winter snow-mediated) and indirect (i.e., root-mediated) effects of winter snowpack decline on soil bacterial and fungal communities, as well as on potential nitrification and net N mineralization rates. Both winter snowpack decline and root exclusion increased bacterial richness and phylogenetic diversity. Variation in bacterial community composition was best explained by differences in winter snow depth or soil frost across elevation. Root ingrowth had a positive effect on the relative abundance of several bacterial taxonomic orders (e.g., Acidobacterales and Actinomycetales). Nominally saprotrophic (e.g., Saccharomycetales and Mucorales) or mycorrhizal (e.g., Helotiales, Russalales, Thelephorales) fungal taxonomic orders were also affected by both root ingrowth and snow depth variation. However, when grouped together, the relative abundance of saprotrophic fungi, arbuscular mycorrhizal fungi, and ectomycorrhizal fungi were not affected by root ingrowth or snow depth, suggesting that traits in addition to trophic mode will mediate fungal community responses to snowpack decline in northern hardwood forests. Potential soil nitrification rates were positively related to ammonia-oxidizing bacteria and archaea abundance (e.g., Nitrospirales, Nitrosomondales, Nitrosphaerales). Rates of N mineralization were positively and negatively correlated with ectomycorrhizal and saprotrophic fungi, respectively, and these relationships were mediated by root exclusion. The results from this study suggest that a declining winter snowpack and its effect on plant roots each have direct effects on the diversity and abundance of soil bacteria and fungal communities that interact to determine rates of soil N cycling in northern hardwood forests.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Impact of prescribed fire on soil microbial communities in a Southern Appalachian Forest clear-cut

Escalating wildfire frequency and severity, exacerbated by shifting climate patterns, pose significant ecological and economic challenges. Prescribed burns, a common forest management tool, aim to mitigate wildfire risks and protect biodiversity. Nevertheless, understanding the impact of prescribed burns on soil and microbial communities in temperate mixed forests, considering temporal dynamics and slash fuel types, remains crucial. Our study, conducted at the University of Tennessee Forest Resources AgResearch and Education Center in Oak Ridge, TN, employed controlled burns across various treatments, and the findings indicate that low-intensity prescribed burns have none or minimal short-term effects on soil parameters but may alter soil nutrient concentrations, as evidenced by significant changes in porewater acetate, formate, and nitrate concentrations. These burns also induce shifts in microbial community structure and diversity, with Proteobacteria and Acidobacteria increasing significantly post-fire, possibly aiding soil recovery. In contrast, Verrucomicrobia showed a notable decrease over time, and other specific microbial taxa correlated with soil pH, porewater nitrate, ammonium , and phosphate concentrations. Our research contributes to understanding the intricate relationships between prescribed fire, soil dynamics, and microbial responses in temperate mixed forests in the Southern Appalachian Region, which is valuable for informed land management practices in the face of evolving environmental challenges.

Microbiology↗
DOE OSTI2018

A New Method to Measure the Post-reionization Ionizing Background from the Joint Distribution of Ly α and Ly β Forest Transmission

The amplitude of the ionizing background that pervades the intergalactic medium (IGM) at the end of the epoch of reionization provides a valuable constraint on the emissivity of the sources that reionized the universe. While measurements of the ionizing background at lower redshifts rely on a simulation-calibrated mapping between the photoionization rate and the mean transmission of the Lyα forest, at z ≳ 6 the IGM becomes increasingly opaque and transmission arises solely in narrow spikes separated by saturated Gunn–Peterson troughs. In this regime, the traditional approach of measuring the average transmission over large ~50 Mpc/h regions is less sensitive and suboptimal. In addition, the five times smaller oscillator strength of the Lyβ transition implies that the Lyβ forest is considerably more transparent at z ≳ 6, even in the presence of contamination by foreground z ~ 5 Lyα forest absorption. We present a novel statistical approach to analyze the joint distribution of transmission spikes in the cospatial z ~ 6 Lyα and Lyβ forests. Our method relies on approximate Bayesian computation (ABC), which circumvents the necessity of computing the intractable likelihood function describing the highly correlated Lyα and Lyβ transmission. We apply ABC to mock data generated from a large-volume hydrodynamical simulation combined with a state-of-the-art model of ionizing background fluctuations in the post-reionization IGM and show that it is sensitive to higher IGM neutral hydrogen fractions than previous techniques. As a proof of concept, we apply this methodology to a real spectrum of a z = 6.54 quasar and measure the ionizing background from 5.4 ≤ z ≤ 6.4 along this sightline with ~0.2 dex statistical uncertainties.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

NITROGEN CAN LIMIT OVERSTORY TREE GROWTH FOLLOWING EXTREME STAND DENSITY INCREASE IN A PONDEROSA PINE FOREST

Extreme stand density increases have occurred in ponderosa pine forests throughout the western U.S. since the early 20th Century, with adverse implications for growth, physiological functioning, and mortality risk. Identifying primary stressors on large, old overstory trees in dense forests can inform management decisions to promote resilience and survival. We tested the impact of stand density increase on overstory treering growth, and the relative influence of water and nitrogen, in an old-growth ponderosa pine forest subject to variable density increase. We measured annual tree-ring growth and carbon discrimination in trees before stand density increased, in a climatically-similar period post-density increase, and in recent transition to drought. We expected density-driven water stress to drive reduced tree-ring growth in overstory trees in dense stands. We found reduced growth and higher mortality in dense stands, but nitrogen rather than water constrained growth, as determined by carbon isotope discrimination in tree rings, leaf nitrogen concentration, and soil nitrogen supply. In dense stands, less available nitrogen limited photosynthetic rate, leading to reduced assimilation of intracellular 13C and higher discrimination with low tree-ring growth and a reduced relationship with climate. This unexpected result illustrates that a variety of limiting factors can influence forest dynamics, as density-driven nitrogen limitation interacts with water stress to influence tree growth and physiological functioning.

dendroecology, tree-ring width, limiting factors, ↗
DOE OSTI2017

Power plant fuel switching and air quality in a tropical, forested environment

How a changing energy matrix for electricity production affects air quality is considered for an urban region in a tropical, forested environment. Manaus, the largest city in the central Amazon Basin of Brazil, is in the process of changing its energy matrix for electricity production from fuel oil and diesel to natural gas over an approximately 10-year period, with a minor contribution by hydropower. Three scenarios of urban air quality, specifically afternoon ozone concentrations, were simulated using the Weather Research and Forecasting (WRF-Chem) model. The first scenario used fuel oil and diesel for electricity production, which was the reality in 2008. The second scenario was based on the fuel mix from 2014, the most current year for which data were available. The third scenario considered nearly complete use of natural gas for electricity production, which is the anticipated future, possibly for 2018. For each case, inventories of anthropogenic emissions were based on electricity generation, refinery operations, and transportation. Transportation and refinery operations were held constant across the three scenarios to focus on effects of power plant fuel switching in a tropical context. The simulated NO x and CO emissions for the urban region decrease by 89 and 55 %, respectively, after the complete change in the energy matrix. The results of the simulations indicate that a change to natural gas significantly decreases maximum afternoon ozone concentrations over the population center, reducing ozone by >70 % for the most polluted days. The sensitivity of ozone concentrations to the fuel switchover is consistent with a NO x -limited regime, as expected for a tropical forest having high emissions of biogenic volatile organic compounds, high water vapor concentrations, and abundant solar radiation. There are key differences in a shifting energy matrix in a tropical, forested environment compared to other world environments. Therefore, policies favoring the burning of natural gas in place of fuel oil and diesel have great potential for ozone reduction and improved air quality for growing urban regions located in tropical, forested environments around the world.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2016

Windthrows increase soil carbon stocks in a central Amazon forest

Windthrows change forest structure and species composition in central Amazon forests. However, the effects of widespread tree mortality associated with wind disturbances on soil properties have not yet been described in this vast region. We investigated short-term effects (7 years after disturbance) of widespread tree mortality caused by a squall line event from mid-January of 2005 on soil carbon stocks and concentrations in a central Amazon terra firme forest. The soil carbon stock (averaged over a 0–30 cm depth profile) in disturbed plots (61.4 ± 8.2 Mg ha -1 , mean ±95 % confidence interval) was marginally higher ( p = 0.09) than that from undisturbed plots (47.7 ± 13.6 Mg ha -1 ). The soil organic carbon concentration in disturbed plots (2.0 ± 0.17 %) was significantly higher ( p < 0.001) than that from undisturbed plots (1.36 ± 0.24 %). Moreover, soil carbon stocks were positively correlated with soil clay content ( r 2 = 0.332, r = 0.575 and p = 0.019) and with tree mortality intensity ( r 2 = 0.257, r = 0.506 and p = 0.045). Our results indicate that large inputs of plant litter associated with large windthrow events cause a short-term increase in soil carbon content, and the degree of increase is related to soil clay content and tree mortality intensity. The higher carbon content and potentially higher nutrient availability in soils from areas recovering from windthrows may favor forest regrowth and increase vegetation resilience.

54 ENVIRONMENTAL SCIENCES↗