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DOE OSTI2023

Reproduction drives changes in space use and habitat selection in a highly adaptable invasive mammal

Abstract For ungulates, it is not well understood how the interaction between habitat and reproduction affects movement behavior, space use, and habitat selection. We used known parturition (farrowing) data to validate First Passage Time (FPT) movement analysis to identify wild pig (Sus scrofa) parturition events from data collected with GPS collars. We examined home range and habitat selection during three physiologically distinct time periods in the reproductive cycle: late-gestation; farrowing; and neonate-care period. Sows exhibited a behavioral change 1-2 days prior to farrowing, suggesting FPT analysis can reliably identify parturition events for wide-ranging species that have a focused birthing area. Home range was smallest during the farrowing period, likely reflective of nest building, parturition, and protection of neonates. Home range size during the neonate-care period was intermediate between the late-gestation and farrowing periods, indicative of offspring care that may restrict maternal movement. Across all periods, sows avoided developed areas that have sparse canopy and ground cover and are associated with human activities. During late-gestation, sows avoided pine forests that have an open understory and less vegetative cover. During late-gestation and neonate-care, sows selected bottomland hardwood forests, habitat associated with ample food, cover, and water. During farrowing and neonate-care periods, sows selected upland hardwood forests, habitat with high quality food and cover for neonates. The physiological requirements of reproduction drive female habitat selection and spatial scale of movement patterns associated with parturition. Our study contributes to delineation of the appropriate scale at which to analyze movement data to provide insight about where individuals chose to place their home range, how much space to use, and how they use resources on the landscape to maximize reproductive success and fitness.

Zoology↗

DOE OSTI2020

Land Use Considerations for Large-Scale Solar

Energy development is the largest driver of land-use and land-cover change in the United States. Today, one of the leading forms of this new development is large-scale solar photovoltaic (PV) plants. This new issue brief is intended to educate local governments and community stakeholders interested in supporting solar development. Topics covered include: 1. Key challenges posed by storm water runoff and mitigation measures that can be incorporated into project development processes. 2. Vegetation Management concepts and their tactical application, including an Integrated Vegetation Management (IVM) strategy. Together, these strategies can help communities and local governments develop policies and guidelines on large-scale solar that can realize both environmental and economic benefits.

14 SOLAR ENERGY↗

DOE OSTI2020

Land Use Considerations For Large-Scale Solar

14 SOLAR ENERGY↗

DOE OSTI2024

Long-term drought promotes invasive species by reducing wildfire severity

Anthropogenic climate change has increased the frequency of drought, wildfire, and invasions of non-native species. Although high-severity fires linked to drought can inhibit recovery of native vegetation in forested ecosystems, it remains unclear how drought impacts the recovery of other plant communities following wildfire. We leveraged an existing rainfall manipulation experiment to test the hypothesis that reduced precipitation, fuel load, and fire severity convert plant community composition from native shrubs to invasive grasses in a Southern California coastal sage scrub system. We measured community composition before and after the 2020 Silverado wildfire in plots with three rainfall treatments. Drought reduced fuel load and vegetation cover, which reduced fire severity. Native shrubs had greater prefire cover in added water plots compared to reduced water plots. Native cover was lower and invasive cover was higher in postfire reduced water plots compared to postfire added and ambient water plots. Our results demonstrate the importance of fuel load on fire severity and plant community composition on an ecosystem scale. Management should focus on reducing fire frequency and removing invasive species to maintain the resilience of coastal sage scrub communities facing drought. In these communities, controlled burns are not recommended as they promote invasive plants.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Fine resolution remote sensing spectra improves estimates of gross primary production of croplands

Gross primary production (GPP) is a fundamental measure of the terrestrial carbon cycle critical to our understanding of ecosystem function under the changing climate and land use. Remote sensing enables access to continuous spatial coverage, but remains challenged in heterogeneous croplands. Coarse resolution products, like MOD17A (500 m), may aggregate fragmented land cover types commonly found in heavily managed landscapes and misrepresent their respective contribution to carbon production. Consequently, this study demonstrates the capability of fine-resolution imagery (20-30 m) and available red-edge vegetation indices to characterize GPP across seven Midwest cropping systems. Four sites were established on a 22-year-old USDA Conservation Reserve Program (CRP); and the other three on land conventionally farmed with corn-soybean-wheat rotation (AGR). We compare in situ GPP estimates from eddy-covariance towers with ten satellite models: eight variants of the vegetation photosynthesis models (VPM), of which five include a red-edge vegetation index, as well as conventional products Landsat CONUS GPP (30 m) and MOD17A2H V6 (500 m). Daily and cumulative fine-resolution imagery integrated within VPM generally agreed with tower-based GPP in heterogeneous landscapes more than those from MODIS 500 m VPM or conventional GPP products from MOD17AH V6 or Landsat 8 CONUS. Here, replacing EVI2 with red-edge indices NDRE2, NDRE1, and MTCI in Sentinel 2 VPMs notably improved explanation of variance and estimation of cumulative GPP. While existing methods using MODIS- and Landsat-derived GPP are important baselines for regional and global studies, future research may benefit from the higher spatial, temporal, and radiometric resolution.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology

Abstract. Vegetation phenology plays a key role in controlling the seasonality of ecosystem processes that modulate carbon, water and energy fluxes between the biosphere and atmosphere. Accurate modelling of vegetation phenology in the interplay of Earth's surface and the atmosphere is thus crucial to understand how the coupled system will respond to and shape climatic changes. Phenology is controlled by meteorological conditions at different timescales: on the one hand, changes in key meteorological variables (temperature, water, radiation) can have immediate effects on the vegetation development; on the other hand, phenological changes can be driven by past environmental conditions, known as memory effects. However, the processes governing meteorological memory effects on phenology are not completely understood, resulting in their limited performance of vegetation phenology represented in land surface models. A deep learning model, specifically a long short-term memory network (LSTM), has the potential to capture and model the meteorological memory effects on vegetation phenology. Here, we apply the LSTM to model the vegetation phenology using meteorological drivers and high-temporal-resolution canopy greenness observations through digital repeat photography by the PhenoCam network. We compare a multiple linear regression model, a no-memory-effect LSTM model and a full-memory-effect LSTM model to predict the whole seasonal greenness trajectory and the corresponding phenological transition dates across 50 sites and 317 site years during 2009–2018, covering deciduous broadleaf forests, evergreen needleleaf forests and grasslands. Results show that the deep learning model outperforms the multiple linear regression model, and the full-memory-effect LSTM model performs better than the no-memory-effect model for all three plant function types (median R2 of 0.878, 0.957 and 0.955 for broadleaf forests, evergreen needleleaf forests and grasslands). We also find that the full-memory-effect LSTM model is capable of predicting the seasonal dynamic variations of canopy greenness and reproducing trends in shifting phenological transition dates. We also performed a sensitivity analysis of the full-memory-effect LSTM model to assess its plausibility, revealing its coherence with established knowledge of vegetation phenology sensitivity to meteorological conditions, particularly changes in temperature. Our study highlights that (1) multi-variate meteorological memory effects play a crucial role in vegetation phenology, and (2) deep learning opens up new avenues for improving the representation of vegetation phenological processes in land surface models via a hybrid modelling approach.

Geology↗

DOE OSTI2021

Urban Forests as Main Regulator of the Evaporative Cooling Effect in Cities

Abstract Higher temperatures in urban areas expose a large fraction of the human population to potentially dangerous heat stress. Green spaces are promoted worldwide as local and city‐scale cooling strategies but the amount, type, and functioning of vegetation in cities lack quantification and their interaction with urban climate in different settings remains a matter of debate. Here we use state‐of‐the‐art remote sensing data from 145 city clusters to disentangle the drivers of surface urban heat islands (SUHI) intensity and quantify urban‐rural differences in vegetation cover, species composition, and evaporative cooling. We show that nighttime SUHIs are affected mostly by abiotic factors, while daytime SUHIs are highly correlated with vegetation characteristics and the wetness of the background climate. Magnitude and seasonality of daytime SUHIs are controlled by urban‐rural differences in plant transpiration and leaf area, which explain the dependence of SUHIs on wetness conditions. Leaf area differences are caused primarily by changes in vegetation type and a loss of in‐city forested areas, highlighting the importance of maintaining “natural reserves” as a sustainable heat mitigation policy.

Paschalis, Athanasios↗

DOE OSTI2024

Impact of Vegetation Assimilation on Flash Drought Characteristics across the Continental United States

Predicting and managing the impacts of flash droughts is difficult owing to their rapid onset and intensification. Flash drought monitoring often relies on assessing changes in root-zone soil moisture. However, the lack of widespread soil moisture measurements means that flash drought assessments often use process-based model data like that from the North American Land Data Assimilation System (NLDAS). Such reliance opens flash drought assessment to model biases, particularly from vegetation processes. Here, we examine the influence of vegetation on NLDAS-simulated flash drought characteristics by comparing two experiments covering 1981–2017: open loop (OL), which uses NLDAS surface meteorological forcing to drive a land surface model using prognostic vegetation, and data assimilation (DA), which instead assimilates near-real-time satellite-derived leaf area index (LAI) into the land surface model. The OL simulation consistently underestimates LAI across the United States, causing relatively high soil moisture values. Both experiments produce similar geographic patterns of flash droughts, but OL produces shorter duration events and regional trends in flash drought occurrence that are sometimes opposite to those in DA. Across the Midwest and Southern United States, flash droughts are 4 weeks (about 70%) longer on average in DA than OL. Moreover, across much of the Great Plains, flash drought occurrence has trended upward according to the DA experiment, opposite to the trend in OL. This sensitivity of flash drought to the representation of vegetation suggests that representing plants with greater fidelity could aid in monitoring flash droughts and improve the prediction of flash drought transitions to more persistent and damaging long-term droughts.

Drought↗

DOE OSTI2025

Community‐Level Metabolic Shifts Following Land Use Change in the Amazon Rainforest Identified by a Supervised Machine Leaning Approach

ABSTRACT The Amazon rainforest has been subjected to high rates of deforestation, mostly for pasturelands, over the last few decades. This change in plant cover is known to alter the soil microbiome and the functions it mediates, but the genomic changes underlying this response are still unresolved. In this study, we used a combination of deep shotgun metagenomics complemented by a supervised machine learning approach to compare the metabolic strategies of tropical soil microbial communities in pristine forests and long‐term established pastures in the Amazon. Machine learning‐derived metagenome analysis indicated that microbial community structures (bacteria, archaea and viruses) and the composition of protein‐coding genes were distinct in each plant cover type environment. Forest and pasture soils had different genomic diversities for the above three taxonomic groups, characterised by their protein‐coding genes. These differences in metagenome profiles in soils under forests and pastures suggest that metabolic strategies related to carbohydrate and energy metabolisms were altered at community level. Changes were also consistent with known modifications to the C and N cycles caused by long‐term shifts in aboveground vegetation and were also associated with several soil physicochemical properties known to change with land use, such as the C/N ratio, soil temperature and exchangeable acidity. In addition, our analysis reveals that these alterations in land use can also result in changes to the composition and diversity of the soil DNA virome. Collectively, our study indicates that soil microbial communities shift their overall metabolic strategies, driven by genomic alterations observed in pristine forests and long‐term established pastures with implications for the C and N cycles.

carbon and nitrogen cycles↗

DOE OSTI2026

Multispectral UAV imagery of experimental freshwater wetlands under 5 ppt saltwater intrusion, Louisiana, 2023 and 2024

Multispectral imagery was collected using an unmanned aerial vehicle (UAV) to evaluate how freshwater vegetation responds to short-term simulated saltwater intrusion events. The purpose of this data collection was to understand how plant health changes in response to acute salinity exposure, which is increasingly relevant in coastal wetland ecosystems facing sea level rise and storm surge events, such as in coastal Louisiana. Three experimental saltwater intrusions were conducted at a salinity of approximately 5 parts per thousand (ppt) for durations of 6-days, 10-days, and 17-days. UAV flights occurred both before and after each treatment. The resulting imagery was processed using Pix4DMapper software to georeference the images and generate orthomosaics. The multispectral sensor used in this study captures reflectance in five bands: blue, green, red, red-edge, and near-infrared. The uploaded data consist of georeferenced .tif orthomosaics for each spectral band, which are compatible with GIS software for vegetation analysis. This imagery can be utilized in investigations into vegetation stress, remote sensing of freshwater wetland ecosystems, and modeling of plant response to environmental changes.

EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS↗

DOE OSTI2020

Tropical understory herbaceous community responds more strongly to hurricane disturbance than to experimental warming

The effects of climate change on tropical forests may have global consequences due to the forests’ high biodiversity and major role in the global carbon cycle. In this study, we document the effects of experimental warming on the abundance and composition of a tropical forest floor herbaceous plant community in the Luquillo Experimental Forest, Puerto Rico. This study was conducted within Tropical Responses to Altered Climate Experiment (TRACE) plots, which use infrared heaters under free-air, open-field conditions, to warm understory vegetation and soils + 4°C above nearby control plots. Hurricanes Irma and María damaged the heating infrastructure in the second year of warming, therefore, the study included one pretreatment year, one year of warming, and one year of hurricane response with no warming. We measured percent leaf cover of individual herbaceous species, fern population dynamics, and species richness and diversity within three warmed and three control plots. Results showed that one year of experimental warming did not significantly affect the cover of individual herbaceous species, fern population dynamics, species richness, or species diversity. In contrast, herbaceous cover increased from 20% to 70%, bare ground decreased from 70% to 6%, and species composition shifted pre to posthurricane. The negligible effects of warming may have been due to the short duration of the warming treatment or an understory that is somewhat resistant to higher temperatures. Our results suggest that climate extremes that are predicted to increase with climate change, such as hurricanes and droughts, may cause more abrupt changes in tropical forest understories than longer-term sustained warming.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Modelling the Effects of Wetland Restoration on Coastal Hydrology: A Case Study of Elkhorn Slough Watershed, California

ABSTRACT Coastal wetlands, some of the most productive ecosystems on Earth, provide critical ecosystem services, including support of biodiversity, carbon sequestration and flood protection. In recent decades, these ecosystems have experienced extensive coastal wetland loss. Coastal wetland restoration provides a beacon of hope, offering a chance to reclaim these important habitats. However, even with billions of dollars invested worldwide in restoring coastal wetlands, we still lack comprehensive knowledge about the effectiveness of these restoration efforts in recovering wetland ecosystem functions and how future climate change may affect these efforts. The ability to evaluate how these ecosystems will function in the future is vital for examining current investments and developing future protection and management plans. We selected Elkhorn Slough, a tidal estuary, in California, to investigate the impact of wetland restoration and sea level rise (SLR) on coastal hydrology using the process‐based coastal hydrologic model, Advanced Terrestrial Simulator (ATS), informed by site‐specific data. We designed a novel modelling workflow for incorporating wetland restoration features into land cover and soil properties for the model parameterization. The validation results demonstrate a strong agreement between modelled and observed data. We studied the characteristics of coastal watershed hydrology, then focused on the surface water dynamics at two wetland sites within Elkhorn Slough, a reference site and a restored site. Our simulation results indicate that the restored site successfully maintains surface elevation, resulting in reduced surface inundation. We also examined the impact of wetland restoration under expected SLR over the next few decades. The low‐lying Yampah Marsh, the reference site, is likely to be inundated due to future SLR when highest tides arrive, while a higher percentage of Hester Marsh, the restored site, would retain marsh vegetation in coming decades, regardless of tidal conditions. Our study provides important information for examining the outcome of restoration practices that include surface elevation in tidal wetlands under climate changes.

advanced terrestrial simulator↗

DOE OSTI2022

Impact of Shifts in Vegetation Phenology on the Carbon Balance of a Semiarid Sagebrush Ecosystem

Dryland ecosystems are critical in regulating the interannual variability of the global terrestrial carbon cycle. The responses of such ecosystems to weather and environmental conditions remain important factors that limit the accurate projections of carbon balance under future climate change. Here, we investigated how shifts in vegetation phenology resulting from changes in weather and environmental conditions influenced ecosystem carbon cycling in one semiarid ecosystem in the Hanford area of central Washington, United States. We examined two years of measurements of the phenology camera, eddy covariance, and soil chamber from an upland semiarid sagebrush ecosystem. Both years had contrasting diel and seasonal patterns of CO 2 fluxes, primarily driven by differences in vegetation phenology. The net ecosystem exchange of CO 2 (NEE) and evapotranspiration (ET) in 2019 were enlarged by shifted vegetation phenology, as a cold and snow-covered winter and warm and dry winter in 2020 resulted in constrained magnitudes of NEE and ET during the summer months. The annual gross primary productivity (GPP) was much higher in 2019 than in 2020 (-211 vs. -112 gC m -2 ), whereas ecosystem respiration was comparable in these two years (164 vs. 144 gC m -2 ). Thus, the annual NEE in 2019 was negative (-47 gC m -2 ) with the sagebrush ecosystem functioning as a carbon sink, while the positive annual NEE in 2020 indicated that the sagebrush ecosystem functioned as a carbon source. Our results demonstrate that winter snowpack can be a critical driver of annual carbon uptake in semiarid sagebrush ecosystems.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

Changes in inundation drive carbon dioxide and methane fluxes in a temperate wetland

Wetlands cycle carbon by being net sinks for carbon dioxide (CO 2 ) and net sources of methane (CH 4 ). Daily and seasonal temporal patterns, dissolved oxygen (DO) availability, inundation status (flooded or dry/partially flooded), water depth, and vegetation can affect the magnitude of carbon uptake or emissions, but the extent and interactive effects of these variables on carbon gas fluxes are poorly understood. We characterized the linkages between carbon fluxes and these environmental and temporal drivers at the Old Woman Creek National Estuarine Research Reserve (OWC), OH. We measured diurnal gas flux patterns in an upstream side channel (called the cove) using chamber measurements at six sites (three vegetated and three non-vegetated). We sampled hourly from 7 AM to 7 PM and monthly from July to October 2022. DO concentrations and water levels were measured monthly. Water inundation status had the most influential effect on carbon fluxes with flooded conditions supporting higher CH 4 fluxes (0.39 μmol CH 4 m –2 s –1 ; –1.23 μmol CO 2 m –2 s –1 ) and drier conditions supporting higher CO 2 fluxes (0.03 μmol CH 4 m –2 s –1 ; 0.86 μmol CO 2 m –2 s –1 ). When flooded, the wetland was a net CO 2 sink; however, it became a source for both CH 4 and CO 2 when water levels were low. We compared chamber-based gas fluxes from the cove in flooded (July) and dry (August) months to fluxes measured with an eddy covariance tower whose footprint covers flooded portions of the wetland. The diurnal pattern of carbon fluxes at the tower did not vary with changing water levels but remained a CO 2 sink and a CH 4 source even when the cove where we performed the chamber measurements dried out. Furthermore, these results emphasize the role of inundation status on wetland carbon cycling and highlight the importance of fluctuating hydrologic patterns, especially hydrologic drawdowns, under changing climatic conditions.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Mapping the global distribution of C 4 vegetation using observations and optimality theory

Plants with the C 4 photosynthesis pathway typically respond to climate change differently from more common C 3 -type plants, due to their distinct anatomical and biochemical characteristics. These different responses are expected to drive changes in global C 4 and C 3 vegetation distributions. However, current C 4 vegetation distribution models may not predict this response as they do not capture multiple interacting factors and often lack observational constraints. Here, we used global observations of plant photosynthetic pathways, satellite remote sensing, and photosynthetic optimality theory to produce an observation-constrained global map of C 4 vegetation. We find that global C 4 vegetation coverage decreased from 17.7% to 17.1% of the land surface during 2001 to 2019. This was the net result of a reduction in C 4 natural grass cover due to elevated CO 2 favoring C 3 -type photosynthesis, and an increase in C 4 crop cover, mainly from corn (maize) expansion. Using an emergent constraint approach, we estimated that C 4 vegetation contributed 19.5% of global photosynthetic carbon assimilation, a value within the range of previous estimates (18–23%) but higher than the ensemble mean of dynamic global vegetation models (14 ± 13%; mean ± one standard deviation). Our study sheds insight on the critical and underappreciated role of C 4 plants in the contemporary global carbon cycle.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Next-Generation Intensity-Duration-Frequency Curves for Diverse Land across the Continental United States

The current methods for designing hydrological infrastructure rely on precipitation-based intensity-duration-frequency curves. However, they cannot accurately predict flooding caused by snowmelt or rain-on-snow events, potentially leading to underdesigned infrastructure and property damage. To address these issues, next-generation intensity-duration-frequency (NG-IDF) curves have been developed for the open condition, characterizing water available for runoff from rainfall, snowmelt, and rain-on-snow. However, they lack consideration of land use land cover (LULC) factors, which can significantly affect runoff processes. We address this limitation by expanding open area NG-IDF dataset to include eight vegetated LULCs over the continental United States, including forest (deciduous, evergreen, mixed), shrub, grass, pasture, crop, and wetland. This NG-IDF 2.0 dataset offers a comprehensive analysis of hydrological extreme events and their associated drivers under different LULCs at a continental scale. It will serve as a useful resource for improving standard design practices and aiding in the assessment of infrastructure design risks. Additionally, it provides useful insights into how changes in LULC impact flooding magnitude, mechanisms, timing, and snow water supply.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Role of Forest Carbon Change in Shaping Future Land Use and Land Cover Change

Global change, particularly the changes in atmospheric CO 2 concentration, climatic variables, and nitrogen deposition, has been widely recognized and examined to have worldwide impacts on forest carbon. However, its influence on forest area required to meet the demand for timber and carbon storage and subsequent land use and land cover change (LULCC) is rarely studied. This study explores the role of global change-driven forest carbon change in shaping future global LULCC projections and investigates underlying drivers. We incorporated the global change impacts on forest carbon from the Canadian Land Surface Scheme Including Biogeochemical Cycles model simulations (driven by meteorological forcing projections from two Earth system models [ESMs]) into the Global Change Analysis Model, under three combinations of shared socioeconomic pathways and representative concentration pathways (SSP126, SSP370, and SSP585). Including forest carbon change decreases the projected expansion of managed forest and managed pasture, reduces the loss of unmanaged pastures and forests, and provides more cropland. The relative change in managed forest by 2100 is -4.0%, -21.7%, and -31.9%, under SSP126, SSP370, and SSP585, respectively, when forest carbon change is considered. CO 2 fertilization is the dominant driver, increasing forest vegetation and soil carbon by 37% and 4.1%, and leading to 78.6% of the total area with a change in land use types by 2100 under SSP585. In comparison, climate change reduces forest vegetation and soil carbon by -3.5% and -0.8%, influencing 23.9% of the total area with a change in land use types by 2100 under SSP585, while nitrogen deposition has minor impacts. Using meteorological forcing data from two ESMs leads to similar impacts of forest carbon change on LULCC in terms of sign and trend but different magnitudes. This study highlights the large impact of forest carbon change on shaping future LULCC dynamics and the critical role of CO 2 fertilization.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2026

Dataset about Warming Effects on Carbon Cycling and Greenhouse Gas Fluxes in Permafrost Ecosystems

Field observations provide direct evidence of how does carbon cycling in permafrost ecosystems respond to climate change. This study provides a comprehensive dataset on the impact of warming on carbon cycling and greenhouse gas (GHG) fluxes in permafrost ecosystems. The dataset is extracted and integrated from 132 peer-reviewed studies with 1430 paired observations across eight major permafrost ecosystems, including Arctic and subarctic tundra and wetland, and alpine meadow, steppe, tundra and wetland. This dataset includes 17 variables from experiments conducted during the growing season, covering the plant and soil carbon pools, soil nitrogen pool, and GHG (i.e., CO 2 , CH 4 , and N 2 O) fluxes, among others. Background information on site climate conditions, vegetation and soil characteristics, and details of the warming experiments, including timing, methods, and warming magnitude, are also contained in the dataset. This dataset facilitates a comprehensive understanding of the impact of warming on carbon cycling and GHG fluxes in permafrost ecosystems, and provides supports for meta-analyses and literature reviews, remote sensing data validation, and land model development and parameterization.

Bao, Tao [Chinese Academy of Sciences (CAS), Beiji↗