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At least 91 records · Page 5

Unfolding Structure Formation in the Dark Universe via Weak Gravitational Lensing: from Pixels to Cosmology in the Dark Energy Survey and Roman Space Telescope

Weak gravitational lensing (deflection of light from distant galaxies due to the gravitational potential of intervening mass) is one of the most exciting probes in cosmology as it is sensitive both to the growth of the large-scale structure and the expansion history of the Universe. We can measure the coherent distortion of galaxy shapes (which we call cosmic shear) and infer the matter distribution. With next-generation imaging surveys such as the Vera C. Rubin Observatory Legacy Survey of Space and Time (Rubin LSST) and the Nancy G. Roman Space Telescope (Roman), there is immense new promise in understanding the fundamental nature of dark matter and dark energy. With datasets from current experiments like the Dark Energy Survey (DES), we see apparent cosmological tensions between experiments that may either be real and indicate new physics or new systematics we do not yet understand. LSST and Roman will increase the number of galaxies we have observed by an order of magnitude, leading to improved constraints on our cosmological model by up to 300%. These experiments will have the potential to prove if these cosmological tensions are real. However, our control of systematic uncertainties must also improve by similar levels to achieve the promise of what these missions can deliver. To achieve these scientific outcomes, the challenges of determining galaxy shapes and redshifts and modeling the impact of astrophysical effects must be solved. My PhD has focused on enabling weak lensing science in DES and Roman. I co-led the shear analysis teams in DES to produce the largest weak lensing galaxy sample, as well as the final DES cosmological analysis of cosmic shear. For Roman, I have led two papers characterizing and mitigating shear-related systematics with image simulations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Distinct Secondary Structures of the Leucine-Rich Repeat Proteoglycans Decorin and Biglycan: Glycosylation-Dependent Conformational Stability

Biglycan and decorin, closely related small leucine-rich repeat proteoglycans, have been overexpressed in eukaryotic cers and two major glycoforms isolated under native conditions: a proteoglycan substituted with glycosaminoglycan chains; and a core protein form secreted devoid of glycosaminoglycans. A comparative biophysical study of these glycoforms has revealed that the overall secondary structures of biglycan and decorin are different. Far-UV Circular Dichroism (CD) spectroscopy of decorin and biglycan proteoglycans indicates that, although they are predominantly Beta-sheet, biglycan has a significantly higher content of alpha-helical structure. Decorin proteoglycan and core protein are very similar, whereas the biglycan core protein exhibits closer similarity to the decorin glycoforms than to. the biglycan proteoglycan form. However, enzymatic removal of the chondroitin sulfate chains from biglycan proteoglycan does not induce a shift to the core protein structure, suggesting that the fmal form is influenced by polysaccharide addition only during biosynthesis. Fluorescence emission spectroscopy demonstrated that the single tryptophan residue, which is at a conserved position at the C-terminal domain of both biglycan and decorin, is found in similar microenvironments. This indicates that at least in this specific domain, the different glycoforms do exhibit apparent conservation of structure. Exposure of decorin and biglycan to 10 M urea resulted in an increase in fluorescent intensity, which indicates that the emission from tryptophan in the native state is quenched. Comparison of urea-induced protein unfolding curves provided further evidence that decorin and biglycan assume different structures in solution. Decorin proteoglycan and core protein unfold in a manner similar to a classic two-state model, in which there is a steep transition to an unfolded state between 1-2 M urea. The biglycan core protein also shows a similar steep transition. However, biglycan proteoglycan shows a broad unfolding transition between 1-6 M urea, probably indicating the presence of stable unfolding intermediates.

Krishnan, Priya↗

Impact of Flux Wire Selection on Neutron Spectrum Adjustment

In reactor dosimetry, spectrum unfolding methods are used to assess the energy-dependent neutron flux following the irradiation of flux wires or foils. For some spectrum unfolding methods, an a priori, or initial guess, spectrum is necessary. However, if the a priori spectrum is not representative of the irradiation spectrum experienced by the flux wires, the spectrum unfolding method may fail or create a nonphysical adjusted spectrum. The unfolded spectrum is dependent on flux wire reaction rates, and therefore cross section. As a result, each selection or combination of flux wires will have a different sensitivity to the group-wise fluence difference between the a priori spectrum and the irradiation spectrum. Therefore, a selection of flux wires that are insensitive to errors in the a priori spectrum would be considered robust choices for reactor dosimetry. In this work, flux wire reaction rates are calculated using a simulated neutron spectrum from the High Flux Isotope Reactor (HFIR) and spectrum unfolding methods are used in each flux wire combinations. The flux wire combinations are compared against a traditional flux wire set of Ti, Fe, and Co, with a summary table of the deemed “good” wire combinations that are insensitive to number of a priori neutron energy groups, group-wise difference between the a priori and irradiation, and magnitude of difference.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Optimising Foil Selection for Neutron Activation Systems

Abstract Neutron spectrum unfolding using activation foils is currently the primary technique planned for measuring the neutron energy spectrum at the first wall of power-generating fusion reactors. Room for improvement in the effectiveness of current foil selection was identified, and a program produced to select foils procedurally in order to maximise the accuracy of the unfolding procedure. Using Kullback–Leibler Divergence to quantify the accuracy, the spectrum unfolded by the procedurally selected set of foils is found to be more accurate than the spectrum unfolded by a set of foils used in the literature.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Introduction, Investigation, and Experimental Validation of a Novel Passive Neutron Spectrometer

Unfolding neutron energy spectra are instrumental for determining personal health effects and calculating dose received. This area of study is heavily researched, and Lawrence Livermore National Laboratory (LLNL) is investigating a passive neutron spectrometer for the purpose of acquiring the information needed to determine personnel dose in the event of a criticality accident. A part of this investigation is presented in this article through the examination of four experimental detector responses (DRs). These four DRs were acquired in the presence of 252 Cf, AmBe, GODIVA, and National Ignition Facility (NIF) neutron sources. An algorithm developed at LLNL was used to unfold the neutron fluence from each of the four DRs, and subsequently, fluence-to-dose conversion factors provided by the American National Standards Institute were used to calculate dose. Additionally, a multistep unfolding process was developed and employed to calculate the effects of both direct (from the source) and indirect (from room return) neutrons. The average error when unfolding the direct DR was less than 8%. The dose from 252 Cf was predicted with only 8% error. The multistep approach allowed for the identification of the low-energy neutrons in the 252 Cf, AmBe, and NIF DRs.

Nuclear Criticality Safety Program (NCSP)↗

Deuterated Xylene-Based Neutron Spectrometry

Deuterated scintillators, such as deuterated xylene (C8D10) have been theorized to offer better pulse shape discrimination (PSD) and neutron spectrometry performance than traditional protiated scintillators due to the anisotropy of neutron scattering on deuterium. However, the light output responses of said deuterated scintillators to monoenergetic has not been characterized in its entirety at both high and low energies. Several time-of-flight experiments were conducted at the Idaho national Laboratory to characterize a pair of EJ-301D deuterated xylene detectors. The low energy detector response to quasi-monoenergetic neutrons was measured using a Cf-252 source, and the high energy detector response was measured using a D-T source and angles of 20, 45, and 60 deg, corresponding to theoretical neutron energies of 13.2, 10.4, and 8.2 MeV. During post-processing, the neutron and gamma bands were clearly able to be separated, even at low light outputs, solidifying the superior PSD capability of deuterated xylene. An exponential of fit of LO=0.63E-2.22*(1-exp(-0.25E)), which has good agreement with previously measured data, was found as the light output response from deuteron recoils. Additionally, measurements of AmBe, D-T, and D-D sources were unfolded using the light output response curve, which resulted in favorable agreement with theoretical values. Further testing of the response matrix by unfolding more sources (such as PuBe) needs to be done, but the unfolding accuracy for currently available sources suggests that deuterated xylene can be used to measure and unfold both fission, monoenergetic, and continuous spectra.

scintillator↗

Early events in G-quadruplex folding captured by time-resolved small-angle X-ray scattering

Abstract Time-resolved small-angle X-ray experiments are reported here that capture and quantify a previously unknown rapid collapse of the unfolded oligonucleotide as an early step in the folding of hybrid 1 and hybrid 2 telomeric G-quadruplex structures. The rapid collapse, initiated by a pH jump, is characterized by an exponential decrease in the radius of gyration from 24.3 to 12.6 Å. The collapse is monophasic and is complete in <600 ms. Additional hand-mixing pH-jump kinetic studies show that slower kinetic steps follow the collapse. The folded and unfolded states at equilibrium were further characterized by SAXS studies and other biophysical tools, showing that G4 unfolding was complete at alkaline pH, but not in LiCl solution as is often claimed. The SAXS Ensemble Optimization Method analysis reveals models of the unfolded state as a dynamic ensemble of flexible oligonucleotide chains with a variety of transient hairpin structures. These results suggest a G4 folding pathway in which a rapid collapse, analogous to molten globule formation seen in proteins, is followed by a confined conformational search within the collapsed particle to form the native contacts ultimately found in the stable folded form.

Biochemistry & Molecular Biology↗

Competing magnetic and nonmagnetic states in monolayer VSe 2 with charge density wave

The field of two-dimensional ferromagnets has been reinvigorated by the discovery of VSe 2 monolayer grown on van der Waals substrates, which is reported to be ferromagnetic with a Curie point higher than 330 K. However, the ferromagnetic and nonmagnetic states of pristine monolayer VSe 2 are highly debated. Here, employing density functional theory, Wannier function calculations, and the band unfolding method, we explore the electronic structure of monolayer VSe 2 with a $\sqrt{3} × \sqrt{7}$ charge density wave (CDW). Certain qualitative aspects of the calculated unfolded band dispersion and unfolded Fermi surface of monolayer VSe 2 with the $\sqrt{3} × \sqrt{7}$ CDW in the nonmagnetic state agree well with previous angle-resolved photoemission spectroscopy results, albeit with uncertainty about whether these experiments probed single or multiple domains. Specifically, we find that an isolated CDW domain naturally induces a strong breaking of the threefold symmetry of the electronic structure. In addition we find that, relative to the undistorted structure, the CDW structure shows a strong competition between nonmagnetic and various magnetic states, with an energy difference less than 5 meV/f.u. For the CDW structure in the antiferromagnetic state, the band dispersions and Fermi surface are similar to those in the nonmagnetic state, while the unfolded bands of the ferromagnetic CDW state display a sizable exchange splitting. These results indicate the possibility of various antiferromagnetic fluctuations in VSe 2 to coexist and compete with ferromagnetic order and the experimentally reported CDW order. In this work, our calculations build insights for exploring the interplay between magnetism and CDW behaviors more generally in transition metal dichalcogenides.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Meas. K+ -Ar Total Inelastic Cross Section at ProtoDUNE-SP

ProtoDUNE-SP is a single-phase liquid argon time projection chamber that took hadron test beam data in 2018. The test beam included positively charged kaons with test beam momenta of 6 GeV/c and 7 GeV/c, providing a sample to study kaons to benefit future DUNE proton decay and neutrino interaction studies with kaons in the final state. The total inelastic cross section of a positively charged kaon was measured at these test beam settings using the LArIAT thin-slice method of dividing the wires of the time projection chamber into target slices for calculating the cross section, which leverages the monolithic quality of liquid argon detectors. A Bayesian-like unfolding method using RooUnfold was applied to both the incident and interacting slice distributions to measure the cross sections at both test beam momenta. The talk will discuss the method of unfolding, optimization studies for unfolding, and applying systematic uncertainties using a LArIAT-style hadronic cross section using unfolding to extract a kaon total inelastic cross section.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Impact of Source Geometry on Detector Response Matrix Efficiency: Simulations of the PFUNS-MUSiC Experiments

This work looks at two different bare highly enriched uranium (HEU) systems, configuration one from Measurements of Uranium Subcritical and Critical (MUSiC) and Prompt Fission Uranium Neutron Spectrum (PFUNS) to see the effect geometry has on detector efficiency and the response matrix. The distance from the multiplying source, the medium between the source and detector, and the geometry of the source all play a part in the efficiency of the detector. These factors are especially important when performing spectrum unfolding. Spectrum unfolding is a process used to reconstruct a true spectrum from measured detector response data. It involves interpreting a set of measured values, such as a light signal from a scintillator, to recover the original neutron energy spectrum. This leads to the question, how much will the efficiency of a detector change when you measure a point source compared to an extended source? The distance and solid angle from the source to the detector may be different. It may only be a minuscule change, but in the spectrum unfolding process it can have a considerable effect on the unfolded spectrum

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Advancements of the nSpec system

For this study, a new characterization of the detector response for the EJ301 liquid scintillator based nSpec system has been conducted at the Los Alamos Neutron Science Center. The new characterization was accomplished in two orders of magnitude less time and with better statistics than the previous characterization. The new and old characterization methods were compared by conducting both types of characterization on two detectors (one EJ301 and one EJ301D). The two methods show consistent results and compare well to results previously published in the literature; however, the results from the characterization of the original nSpec detector show discrepancies that have been identified as being caused by oxygen being absorbed into the detector due to a leak. The new characterized detector response shows improved spectrum unfolding performance than the previous characterization. The cross talk of the detector system was also characterized as a function of incident neutron energy and found to have a negligible impact on spectrum unfolding results. Alternative materials (EJ301D and stilbene) were also characterized in a first step towards an upgraded system. The different materials show little difference in unfolding performance, but the comparison is ongoing. A SiPM based stilbene detector was used to evaluate the use of SiPMs in a future system upgrade. The SiPM provides adequate performance, but the custom SiPM readout results in a much longer pulse width than PMT based systems. The measured light output of the SiPM based stilbene compares well with the results in literature. Future work will look at additional materials (deuterated stilbene and organic glass) and optimizing the SiPM readout to decrease the pulse width.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Structure and Interactions of HIV-1 gp41 CHR-NHR Reverse Hairpin Constructs Reveal Molecular Determinants of Antiviral Activity

Engineered reverse hairpin constructs containing a partial C-heptad repeat (CHR) sequence followed by a short loop and full-length N-heptad repeat (NHR) were previously shown to form trimers in solution and to be nanomolar inhibitors of HIV-1 Env mediated fusion. Their target is the in situ gp41 fusion intermediate, and they have similar potency to other previously reported NHR trimers. However, their design implies that the NHR is partially covered by CHR, which would be expected to limit potency. An exposed hydrophobic pocket in the folded structure may be sufficient to confer the observed potency, or they may exist in a partially unfolded state exposing full length NHR. Here, in this study, we examined their structure by crystallography, CD and fluorescence, establishing that the proteins are folded hairpins both in crystal form and in solution. We examined unfolding in the milieu of the fusion reaction by conducting experiments in the presence of a membrane mimetic solvent and by engineering a disulfide bond into the structure to prevent partial unfolding. We further examined the role of the hydrophobic pocket, using a hairpin-small molecule adduct that occluded the pocket, as confirmed by X-ray footprinting. The results demonstrated that the NHR region nominally covered by CHR in the engineered constructs and the hydrophobic pocket region that is exposed by design were both essential for nanomolar potency and that interaction with membrane is likely to play a role in promoting the required inhibitor structure. The design concepts can be applied to other Class 1 viral fusion proteins.

59 BASIC BIOLOGICAL SCIENCES↗

Development of a compact fast-neutron spectrometer for nuclear emergency response applications

We have developed a Compact Fast Neutron Spectrometer (CFNS) for passive assay of special nuclear material (SNM) through the observation of fast neutrons. The CFNS consists of eight organic glass scintillators (OGS) coupled to silicon photomultipliers and a waveform digitizer, which are integrated within a human-portable box. The CFNS determines the neutron energy profile by spectrum unfolding using the Maximum-Likelihood Expectation Maximization method. The detector acquisition system was optimized to have a dynamic range of up to 10 MeV neutron energy. Bulk special nuclear material (SNM) measurements from the National Criticality Experiments Research Center were analyzed for SNM validation/examination. Additionally, the results show that the CFNS can be used to distinguish between fission and (α, n) neutron emitters, regardless of intervening material type (Cu and polyethylene) and thickness, by taking the ratio of neutron counts at different regions in the unfolded energy spectrum. Additionally, by fitting an exponential curve to the unfolded energy spectrum of PuO 2 and Pu neutron emitters, the CFNS showed the ability of distinguishing between pure Pu oxide, pure Pu metal and mixed oxide-metal configurations.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

A Computational Study of RNA Tetraloop Thermodynamics, Including Misfolded States

An important characteristic of RNA folding is the adoption of alternative configurations of similar stability, often referred to as misfolded configurations. These configurations are considered to compete with correctly folded configurations, although their rigorous thermodynamic and structural characterization remains elusive. Tetraloop motifs found in large ribozymes are ideal systems for an atomistically detailed computational quantification of folding free energy landscapes and the structural characterization of their constituent free energy basins, including nonnative states. In this work, we studied a group of closely related 10-mer tetraloops using a combined parallel tempering and metadynamics technique that allows a reliable sampling of the free energy landscapes, requiring only knowledge that the stem folds into a canonical A-RNA configuration. Here we isolated and analyzed unfolded, folded, and misfolded populations that correspond to different free energy basins. We identified a distinct misfolded state that has a stability very close to that of the correctly folded state. This misfolded state contains a predominant population that shares the same structural features across all tetraloops studied here and lacks the noncanonical A-G base pair in its loop portion. Further analysis performed with biased trajectories showed that although this competitive misfolded state is not an essential intermediate, it is visited in most of the transitions from unfolded to correctly folded states. Moreover, the tetraloops can transition from this misfolded state to the correctly folded state without requiring extensive unfolding.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Dynamic behavior of chemically tunable mechano-responsive hydrogels

Here, using theory and simulation, we model the mechanical behavior of gels that encompass loops and dangling chain ends. If the loops remain folded and dangling ends are chemically inert, then these topological features just serve as defects. If, however, the loops unfold to expose the hidden (“cryptic”) binding sites and the ends of the dangling chains are reactive, these moieties can form bonds that improve the gel's mechanical properties. For gels with a lower critical solubility temperature (LCST), we systematically switch on the possible unfolding and binding events. To quantify the resulting effects, we derive equations for the gel's equilibrium and dynamic elastic moduli. We also use a finite element approach to simulate the gel's response to deformation and validate the analytic calculations. Herein, we show that the equilibrium moduli are highly sensitive to the presence of unfolding and binding transitions. The dynamical moduli are sensitive not only to these structural changes, but also to the frequency of deformation. For example, when reactive ends bind to exposed cryptic sites at T = 29 °C and relatively high frequency, the storage shear modulus is 119% greater than the corresponding equilibrium value, while the storage Young's modulus is 109% greater than at equilibrium. These findings provide guidelines for tuning the chemical reactivity of loops and dangling ends and the frequency of deformation to tailor the mechano-responsive behavior of polymer networks.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Designing observables for measurements with deep learning

Many analyses in particle and nuclear physics use simulations to infer fundamental, effective, or phenomenological parameters of the underlying physics models. When the inference is performed with unfolded cross sections, the observables are designed using physics intuition and heuristics. We propose to design targeted observables with machine learning. Unfolded, differential cross sections in a neural network output contain the most information about parameters of interest and can be well-measured by construction. The networks are trained using a custom loss function that rewards outputs that are sensitive to the parameter(s) of interest while simultaneously penalizing outputs that are different between particle-level and detector-level (to minimize detector distortions). We demonstrate this idea in simulation using two physics models for inclusive measurements in deep inelastic scattering. We find that the new approach is more sensitive than classical observables at distinguishing the two models and also has a reduced unfolding uncertainty due to the reduced detector distortions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

An X-ray Intensity Operations Monitor (AXIOM) (Final LDRD Project Report)

The Saturn accelerator has historically lacked the capability to measure time-resolved spectra for its 3-ring bremsstrahlung x-ray source. This project aimed to create a spectrometer called AXIOM to provide this capability. The project had three major development pillars: hardware, simulation, and unfold code. The hardware consists of a ring of 24 detectors around an existing x-ray pinhole camera. The diagnostic was fielded on two shots at Saturn and over 100 shots at the TriMeV accelerator at Idaho Accelerator Center. A new Saturn x-ray environment simulation was created using measured data to validate. This simulation allows for timeresolved spectra computation to compare the experimental results. The AXIOM-Unfold code is a new parametric unfold code using modern global optimizers and uncertainty quantification. The code was written in Python, uses Gitlab version control and issue tracking, and has been developed with long term code support and maintenance in mind.

43 PARTICLE ACCELERATORS↗

Foldable self-erecting joint

The invention relates to a foldable self erecting joint which may be used to deploy the tetratruss frame of the proposed shuttle launched triangular space station. The frame must be folded into the payload bay of the space shuttle orbiter. To deploy the frame the tubes are automatically unfolded and once in position should remain safely. A pair of hinged, tubular members in which the hinging is located at corresponding portions of the members are used. The opposite edge portions are connected by spring-based toggle links which in the unfolded position of the members are nested against one of the members in substantial alignment and over-center for securely locking the joint in the unfolded position.

Pelischek, T. E.↗