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At least 91 records · Page 5

Editorial: Synthetic metabolism for the third-generation (3G) biorefineries

The demand for energy has increased significantly to meet the development of the economy and the increasing population. With the continuous consumption of energy, the shortage of non-renewable resources and the greenhouse effect have aroused worldwide attention. Therefore, the conversion of one-carbon substrates such as formate, methanol, and carbon dioxide (CO 2 ) as sustainable feedstocks into high-value-added products is a potential way to address such concerns. Although one-carbon substrates can be converted into organics by natural pathways, these pathways may not be optimal due to the multiple enzymes involved and remarkable amounts of energy consumption. Thus, synthetic biology, as an emerging field, offers a new approach to boost one-carbon bioconversion.

09 BIOMASS FUELS↗

Development of a realistic set of synthetic earth impactor orbits

We present a refined method for creating orbits of fictitious Earth impactors that are representative of the actual impactor population. Such orbits are crucial inputs to a variety of investigations, such as those that seek to discern how well and how early a particular asteroid survey can detect impactors, or to understand the progression of impact probability as an object is tracked after discovery.

Jedicke, Robert↗

TwinMe4AD: WGAN-based Digital Twins for Anomaly Detection

SAND2024-08373O TwinMe4AD is a Python-based software tool designed for anomaly detection using digital twins that closely mimic real, wearable healthcare datasets. The tool is invaluable for scenarios where collecting data is either expensive or impractical, serving as a privacy-preserving solution. Sensitive information is protected by training deep learning models on synthetic data derived from real datasets. One of TwinMe4AD's key features is its anomaly detection capability, which is based on fourth-order moments of parameters. This versatile approach can be applied across a range of datasets, from univariate to multivariate, making it compatible with various types of data. It also generates synthetic twins using Wasserstein Generative Adversarial Networks (WGANs), allowing users to create a small cohort of a population similar to that of a village population. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Poorey, Kunal↗

Multilayered Ordered Protein Arrays Self-Assembled from a Mixed Population of Virus-like Particles

Biology shows many examples of spatially controlled assembly of cells and biomacromolecules into hierarchically organized structures, to which many of the complex biological functions are attributed. While such biological structures have inspired the design of synthetic materials, it is still a great challenge to control the spatial arrangement of individual building blocks when assembling multiple types of components into bulk materials. Here, in this study, we report self-assembly of multilayered, ordered protein arrays from mixed populations of virus-like particles (VLPs). We systematically tuned the magnitude of the surface charge of the VLPs via mutagenesis to prepare four different types of VLPs for mixing. A mixture of up to four types of VLPs selectively assembled into higher-order structures in the presence of oppositely charged dendrimers during a gradual lowering of the ionic strength of the solution. The assembly resulted in the formation of three-dimensional ordered VLP arrays with up to four distinct layers including a central core, with each layer comprising a single type of VLP. A coarse-grained computational model was developed and simulated using molecular dynamics to probe the formation of the multilayered, core-shell structure. Our findings establish a simple and versatile bottom-up strategy to synthesize multilayered, ordered materials by controlling the spatial arrangement of multiple types of nanoscale building blocks in a one-pot fabrication.

59 BASIC BIOLOGICAL SCIENCES↗

Global Characteristics of Observable Foreshocks for Large Earthquakes

Abstract Foreshocks are the only currently widely identified precursory seismic behavior, yet their utility and even identifiability are problematic, in part because of extreme variation in behavior. Here, we establish some global trends that help identify the expected frequency of foreshocks as well the type of earthquake most prone to foreshocks. We establish these tendencies using the global earthquake catalog of the U.S. Geological Survey National Earthquake Information Center with a completeness level of magnitude 5 and mainshocks with Mw≥7.0. Foreshocks are identified using three clustering algorithms to address the challenge of distinguishing foreshocks from background activity. The methods give a range of 15%–43% of large mainshocks having at least one foreshock but a narrower range of 13%–26% having at least one foreshock with magnitude within two units of the mainshock magnitude. These observed global foreshock rates are similar to regional values for a completeness level of magnitude 3 using the same detection conditions. The foreshock sequences have distinctive characteristics with the global composite population b-values being lower for foreshocks than for aftershocks, an attribute that is also manifested in synthetic catalogs computed by epidemic-type aftershock sequences, which intrinsically involves only cascading processes. Focal mechanism similarity of foreshocks relative to mainshocks is more pronounced than for aftershocks. Despite these distinguishing characteristics of foreshock sequences, the conditions that promote high foreshock productivity are similar to those that promote high aftershock productivity. For instance, a modestly higher percentage of interplate mainshocks have foreshocks than intraplate mainshocks, and reverse faulting events slightly more commonly have foreshocks than normal or strike-slip-faulting mainshocks. The western circum-Pacific is prone to having slightly more foreshock activity than the eastern circum-Pacific.

Geochemistry & Geophysics↗

The Rise and Fall of Star Formation Histories of Blue Galaxies at Redshifts 0.2 < z < 1.4

Popular cosmological scenarios predict that galaxies form hierarchically from the merger of many progenitor, each with their own unique star formation history (SFH). We use the approach recently developed by Pacifici et al. to constrain the SFHs of 4517 blue (presumably star-forming) galaxies with spectroscopic redshifts in the range O.2 < z < 1:4 from the All-Wavelength Extended Groth Strip International Survey (AEGIS). This consists in the Bayesian analysis of the observed galaxy spectral ' energy distributions with a comprehensive library of synthetic spectra assembled using state-of-the-art models of star formation and chemical enrichment histories, stellar population synthesis, nebular emission and attenuation by dust. We constrain the SFH of each galaxy in our sample by comparing the observed fluxes in the B, R,l and K(sub s) bands and rest-frame optical emission-line luminosities with those of one million model spectral energy distributions. We explore the dependence of the resulting SFH on galaxy stellar mass and redshift. We find that the average SFHs of high-mass galaxies rise and fall in a roughly symmetric bell-shaped manner, while those of low-mass galaxies rise progressively in time, consistent with the typically stronger activity of star formation in low-mass compared to high-mass galaxies. For galaxies of all masses, the star formation activity rises more rapidly at high than at low redshift. These findings imply that the standard approximation of exponentially declining SFHs wIdely used to interpret observed galaxy spectral energy distributions is not appropriate to constrain the physical parameters of star-forming galaxies at intermediate redshifts.

Pacifici, Camilla↗

Stochastic economic dispatch of wind power under uncertainty using clustering-based extreme scenarios

Operation of power systems with high penetrations of renewable energy sources requires tools for robust decision making under uncertainty. Stochastic economic dispatch and stochastic unit commitment are effective techniques for planning and operation under uncertainty, whose effectiveness depends on the cardinality and quality of the scenario set. Here, this article proposes a machine learning method using -means clustering for capturing relevant physical information from a large population of analog scenarios. Extreme scenario samples drawn from the clusters are used in a two-stage stochastic economic dispatch computation. The effectiveness of the proposed approach is assessed on a synthetic 200-bus system with a geographic footprint over Illinois, USA for four months from each season of WIND Toolkit data. The combination of -means clustering with importance sampling is shown to reduce the total operational cost by over 43% compared to sampling from populations based on heuristic clustering-based methods. Additionally, the variability in the mean cost is about 56% lower than the variability using Monte Carlo sampling. Moreover, the operational cost with the presented approach is shown to be close to the cost calculated based on a hindsight exact wind profile, signifying a highly accurate quantification of wind uncertainty by the presented -means clustering based sampling method.

17 WIND ENERGY↗

Evolutionary Computing Methods for Spectral Retrieval

A methodology for processing spectral images to retrieve information on underlying physical, chemical, and/or biological phenomena is based on evolutionary and related computational methods implemented in software. In a typical case, the solution (the information that one seeks to retrieve) consists of parameters of a mathematical model that represents one or more of the phenomena of interest. The methodology was developed for the initial purpose of retrieving the desired information from spectral image data acquired by remote-sensing instruments aimed at planets (including the Earth). Examples of information desired in such applications include trace gas concentrations, temperature profiles, surface types, day/night fractions, cloud/aerosol fractions, seasons, and viewing angles. The methodology is also potentially useful for retrieving information on chemical and/or biological hazards in terrestrial settings. In this methodology, one utilizes an iterative process that minimizes a fitness function indicative of the degree of dissimilarity between observed and synthetic spectral and angular data. The evolutionary computing methods that lie at the heart of this process yield a population of solutions (sets of the desired parameters) within an accuracy represented by a fitness-function value specified by the user. The evolutionary computing methods (ECM) used in this methodology are Genetic Algorithms and Simulated Annealing, both of which are well-established optimization techniques and have also been described in previous NASA Tech Briefs articles. These are embedded in a conceptual framework, represented in the architecture of the implementing software, that enables automatic retrieval of spectral and angular data and analysis of the retrieved solutions for uniqueness.

Terrile, Richard↗

A non-local thermodynamic equilibrium, line-blanketed synthetic spectrum of Iota Herculis - C, Al, and Si lines

A non-LTE line-blanketed model stellar atmosphere is used to compute a model of I Herculis (B3 IV) with a Teff of 17,500 K and a log g of 3.75, following the conclusions of Peters and Polidan (1985). Detailed profiles of a number of lines of C, Al, and Si in the 1200-2000-A region are computed, including the resonance lines of C II, Al II, and Al III. These profiles are compared to observations obtained from the coaddition of eight IUE SWP images, using a technique developed by Leckrone and Adelman (1989). Comparison of carbon lines with a model that is underabundant in carbon by a factor of 2 relative to the sun indicates that the C abundance of Iota Her is at most one-half solar. Non-LTE effects are examined by comparing an LTE model possessing identical atmospheric parameters with the non-LTE model. Substantial differences in the populations of the model atomic states are found, but differences in the temperature structure of the two models often mask the non-LTE effects in the synthetic spectra.

Grigsby, James A.↗

Overcoming fundamental challenges of the electrochemical nitrogen oxidation reaction

Nitric acid and nitrates play a crucial role in modern agriculture and medicine; however, their commercial production through the Haber–Bosch and Ostwald processes is energy-intensive and generates significant greenhouse gas emissions. Additionally, the rapidly growing global population is expected to significantly increase food demand in the coming decades. Therefore, there is a pressing need to explore sustainable alternatives for synthetic fertilizer production to meet increasing global crop demands while reducing the carbon footprint. The electrochemical nitrogen oxidation reaction (NOR) presents a viable alternative which produces nitrates using renewable electricity. However, NOR is still a nascent reaction that has not been studied extensively, and several key challenges must be addressed as the field develops. In this feature article review, we highlight the set of effective approaches that we have employed for studying this complex reaction and overcoming these challenges, as well as discuss future directions for advancing NOR technology.

Energy - Conversion↗

Density measurements in an expanding flow using holographic interferometry

A nonequilibrium expansion of nitrogen through a 2-dimensional nozzle of a reflected shock tunnel is investigated with laser holography, time resolved pressure measurements and emission spectroscopy to characterize the flow field for vibrational relaxation measurements. A 2D computation is used to simulate the nozzle flow field. Synthetic holograms are generated using the computed density profiles and are compared with the experimental holograms. Also, using a quasi 1-D approximation, populations for each vibrational level are computed by (1) solving the master equations and (2) using the Landau-Teller formulation. Computational accuracy of both models is assessed against the experimental data.

Sharma, Surendra P.↗

Continuous in vitro evolution of bacteriophage RNA polymerase promoters

Rapid in vitro evolution of bacteriophage T7, T3, and SP6 RNA polymerase promoters was achieved by a method that allows continuous enrichment of DNAs that contain functional promoter elements. This method exploits the ability of a special class of nucleic acid molecules to replicate continuously in the presence of both a reverse transcriptase and a DNA-dependent RNA polymerase. Replication involves the synthesis of both RNA and cDNA intermediates. The cDNA strand contains an embedded promoter sequence, which becomes converted to a functional double-stranded promoter element, leading to the production of RNA transcripts. Synthetic cDNAs, including those that contain randomized promoter sequences, can be used to initiate the amplification cycle. However, only those cDNAs that contain functional promoter sequences are able to produce RNA transcripts. Furthermore, each RNA transcript encodes the RNA polymerase promoter sequence that was responsible for initiation of its own transcription. Thus, the population of amplifying molecules quickly becomes enriched for those templates that encode functional promoters. Optimal promoter sequences for phage T7, T3, and SP6 RNA polymerase were identified after a 2-h amplification reaction, initiated in each case with a pool of synthetic cDNAs encoding greater than 10(10) promoter sequence variants.

Non-NASA Center↗

Energy Conversion and Electron Acceleration and Transport in 3D Simulations of Solar Flares

Recent observations and simulations indicate that solar flares undergo extremely complex 3D evolution, making 3D particle transport models essential for understanding electron acceleration and interpreting flare emissions. In this study, we investigate this problem by solving Parker’s transport equation with 3D MHD simulations of solar flares. By examining energy conversion in the 3D system, we evaluate the roles of different acceleration mechanisms, including reconnection current sheet (CS), termination shock (TS), and supra-arcade downflows (SADs). We find that large-amplitude turbulent fluctuations are generated and sustained in the 3D system. The model results demonstrate that a significant number of electrons are accelerated to hundreds of keV and even a few MeV, forming power-law energy spectra. These energetic particles are widely distributed, with concentrations at the TS and in the flare looptop region, consistent with results derived from recent hard X-ray (HXR) and microwave (MW) observations. By selectively turning particle acceleration on or off in specific regions, we find that the CS and SADs effectively accelerate electrons to several hundred keV, while the TS enables further acceleration to MeV. However, no single mechanism can independently account for the significant number of energetic electrons observed. Instead, the mechanisms work synergistically to produce a large population of accelerated electrons. Our model provides spatially and temporally resolved electron distributions in the whole flare region and at the flare footpoints, enabling synthetic HXR and MW emission modeling for comparison with observations. These results offer important insights into electron acceleration and transport in 3D solar flare regions.

79 ASTRONOMY AND ASTROPHYSICS↗

First results from Goddard High-Resolution Spectrograph - C I, S I, and CO toward Xi Persei and the physical conditions in diffuse clouds

Observations made by the Goddard High Resolution Spectrograph of the cool, neutral interstellar gas in the line of sight to Xi Per are reported. Heliocentric velocities and equivalent widths were measured for absorption lines of C I and S I. Synthetic spectra were computed and fitted to the observed CO(2-0) and (3-0) bands in the A IPi - X 1Sigma(+) system. Derived populations of the C I ground-state fine-structure levels and the CO ground-state rotational levels were used to derive densities of two of the three, and possibly four, detected cloud components. The velocity component displaying the strongest C I absorption reveals extraordinarily high pressure.

Smith, Andrew M.↗

A frugal CRISPR kit for equitable and accessible education in gene editing and synthetic biology

Equitable and accessible education in life sciences, bioengineering, and synthetic biology is crucial for training the next generation of scientists, fostering transparency in public decision-making, and ensuring biotechnology can benefit a wide-ranging population. As a groundbreaking technology for genome engineering, CRISPR has transformed research and therapeutics. However, hands-on exposure to this technology in educational settings remains limited due to the extensive resources required for CRISPR experiments. Here, we develop CRISPRkit, an affordable kit designed for gene editing and regulation in high school education. CRISPRkit eliminates the need for specialized equipment, prioritizes biosafety, and utilizes cost-effective reagents. By integrating CRISPRi gene regulation, colorful chromoproteins, cell-free transcription-translation systems, smartphone-based quantification, and an in-house automated algorithm (CRISPectra), our kit offers an inexpensive (~$2) and user-friendly approach to performing and analyzing CRISPR experiments, without the need for a traditional laboratory setup. Experiments conducted by high school students in classroom settings highlight the kit’s utility for reliable CRISPRkit experiments. Furthermore, CRISPRkit provides a modular and expandable platform for genome engineering, and we demonstrate its applications for controlling fluorescent proteins and metabolic pathways such as melanin production. We envision CRISPRkit will facilitate biotechnology education for communities of diverse socioeconomic and geographic backgrounds.

59 BASIC BIOLOGICAL SCIENCES↗

Science questions for the Magellan continuing mission

Magellan has completed two mapping cycles around the planet Venus, returning high resolution synthetic aperture images and altimetry data of over 95 percent of the planet's surface. Venus is dominated by low lying volcanic plains with an impact crater population indicating an average surface age of about 500 million years. Highland regions either tend to be characterized by volcanic shield complexes and rifting or by complex ridged terrain. Successful as the primary mission of Magellan has been, significant scientific questions remain to be addressed with imaging and gravity data that will be collected over the next several years.

Saunders, R. S.↗

An economic analysis of space solar power and its cost competitiveness as a supplemental source of energy for space and ground markets

Economic Growth has been historically associated with nations that first made use of each new energy source. There is no doubt that Solar Power Satellites is high as a potential energy system for the future. A conceptual cost model of the economics value of space solar power (SSP) as a source of complementary power for in-space and ground applications will be discussed. Several financial analysis will be offered based on present and new technological innovations that may compete with or be complementary to present energy market suppliers depending on various institutional arrangements for government and the private sector in a Global Economy. Any of the systems based on fossil fuels such as coal, oil, natural gas, and synthetic fuels share the problem of being finite resources and are subject to ever-increasing cost as they grow ever more scarce with drastic increase in world population. Increasing world population and requirements from emerging underdeveloped countries will also increase overall demand. This paper would compare the future value of SSP with that of other terrestrial renewable energy in distinct geographic markets within the US, in developing countries, Europe, Asia, and Eastern Europe.

electric power inter-regional electricity trading↗

Validation of the DESI 2024 Lyα forest BAO analysis using synthetic datasets

The first year of data from the Dark Energy Spectroscopic Instrument (DESI) contains the largest set of Lyman-α (Lyα) forest spectra ever observed. This data, collected in the DESI Data Release 1 (DR1) sample, has been used to measure the Baryon Acoustic Oscillation (BAO) feature at redshift z = 2.33. In this work, we use a set of 150 synthetic realizations of DESI DR1 to validate the DESI 2024 Lyα forest BAO measurement presented in [1]. The synthetic data sets are based on Gaussian random fields using the log-normal approximation. We produce realistic synthetic DESI spectra that include all major contaminants affecting the Lyα forest. The synthetic data sets span a redshift range 1.8 < z < 3.8, and are analyzed using the same framework and pipeline used for the DESI 2024 Lyα forest BAO measurement. To measure BAO, we use both the Lyα auto-correlation and its cross-correlation with quasar positions. We use the mean of correlation functions from the set of DESI DR1 realizations to show that our model is able to recover unbiased measurements of the BAO position. We also fit each mock individually and study the population of BAO fits in order to validate BAO uncertainties and test our method for estimating the covariance matrix of the Lyα forest correlation functions. Finally, we discuss the implications of our results and identify the needs for the next generation of Lyα forest synthetic data sets, with the top priority being to simulate the effect of BAO broadening due to non-linear evolution.

79 ASTRONOMY AND ASTROPHYSICS↗