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At least 91 records · Page 5

Bridging Place-Based Astrobiology Education with Genomics, Including Descriptions of Three Novel Bacterial Species Isolated from Mars Analog Sites of Cultural Relevance

Democratizing genomic data science, including bioinformatics, can diversify the STEM workforce and may, in turn, bring new perspectives into the space sciences. In this respect, the development of education and research programs that bridge genome science with “place” and world-views specific to a given region are valuable for Indigenous students and educators. Through a multi-institutional collaboration, we developed an ongoing education program and model that includes Illumina and Oxford Nanopore sequencing, free bioinformatic platforms, and teacher training workshops to address our research and education goals through a place-based science education lens. High school students and researchers cultivated, sequenced, assembled, and annotated the genomes of 13 bacteria from Mars analog sites with cultural relevance, 10 of which were novel species. Students, teachers, and community members assisted with the discovery of new, potentially chemolithotrophic bacteria relevant to astrobiology. This joint education-research program also led to the discovery of species from Mars analog sites capable of producing N-acyl homoserine lactones, which are quorum-sensing molecules used in bacterial communication. Whole genome sequencing was completed in high school classrooms, and connected students to funded space research, increased research output, and provided culturally relevant, place-based science education, with participants naming three novel species described here. Students at St. Andrew's School (Honolulu, Hawai‘i) proposed the name Bradyrhizobium prioritasuperba for the type strain, BL16A T , of the new species (DSM 112479 T = NCTC 14602 T ). The nonprofit organization Kauluakalana proposed the name Brenneria ulupoensis for the type strain, K61 T , of the new species (DSM 116657 T = LMG = 33184 T ), and Hawai‘i Baptist Academy students proposed the name Paraflavitalea speifideiaquila for the type strain, BL16E T , of the new species (DSM 112478 T = NCTC 14603 T ).

59 BASIC BIOLOGICAL SCIENCES↗

Redundancy of einselected information in quantum Darwinism: The irrelevance of irrelevant environment bits [Separating the wheat from the chaff: Redundancy and relevant information in quantum Darwinism]

Here, the objective, classical world emerges from the underlying quantum substrate via the proliferation of redundant copies of selected information into the environment, which acts as a communication channel, transmitting that information to observers. These copies are independently accessible, allowing many observers to reach consensus about the state of a quantum system via its imprints in the environment. Quantum Darwinism recognizes that the redundancy of information is thus central to the emergence of objective reality in the quantum world. However, in addition to the “quantum system of interest,” there are many other systems “of no interest” in the Universe that can imprint information on the common environment. There is therefore a danger that the information of interest will be diluted with irrelevant bits, suppressing the redundancy responsible for objectivity. We show that mixing of the relevant (the “wheat”) and irrelevant (the “chaff”) bits of information makes little quantitative difference to the redundancy of the information of interest. Thus, we demonstrate that it does not matter whether one separates the wheat (relevant information) from the (irrelevant) chaff: The large redundancy of the relevant information survives dilution, providing evidence of the objective, effectively classical world.

74 ATOMIC AND MOLECULAR PHYSICS↗

ZFSP Proposal: Understanding the Physics and Chemistry of Iron Alloys relevant to the Conditions of Planetary Cores

Recent research results by the deep-Earth geoscience and astronomy communities have revealed a wealth of interesting and outstanding fundamental science questions about the interiors of terrestrial planets and exoplanets including the origin of the magnetic field in the iron core and its impact on the evolution of life, the alloying of light elements on physics and chemistry of the planet’s dynamic processes, and the discovery of super-rotation and heterogeneous behavior of the inner core. Resolving these questions requires a first-hand experimental database at relevant pressure-temperature (P-T) conditions, but is technically challenging using static diamond anvil cell (DAC) and dynamic shock wave efforts alone, due to their limited P-T conditions and analytical capabilities. However, the recent advent of new capabilities of Sandia’s Z-Machine, coupled with our recent developments in in-situ ellipsometry at the UT Austin and Sandia National Laboratory and first-principles calculations and geodynamic modelling capabilities at UC Berkeley, motivates the joint collaborative effort presented here. In this collaborative research, we will use the capabilities of Sandia’s Z-Machine to investigate the elastic, thermal transport and melting properties of material relevant to both Earth and exoplanets at their relative P-T conditions. Our long-term research goal is to better understand the physics and dynamics of planetary interiors through interdisciplinary collaborations between physicists, mineral physicists, theorists, geodynamicists, and astrophysicists. The conditions in the Earth and super-Earth can range up to ~300-500 GPa and ~5000-8000 K. We will couple these experiments with a unique set of diagnostics, to include a new ellipsometry capability, in order to sensitively measure conductivity of these materials, and phase changes, including melting. Specifically, the newly demonstrated capability of Z to shock materials to a given P-T along the Hugoniot, and then to apply a pressure ramp taking the material along an isentrope, provides a unique opportunity to obtain P-T conditions not accessible by traditional DAC technology, or through shocks simply along the Hugoniot. Our physics team will perform experiments and analyze results to determine the physics underlying iron alloys as high-energy planetary impactors, classic transition metal alloys, and iron-bearing periclase relevant to the interiors of rocky planets, including exoplanets. The experimental results so analyzed will provide data that our collaborative team of mineral physicists, geodynamics, seismologists, and astrophysicists will apply toward obtaining a fundamental understanding of the physical and chemical states of the terrestrial planets and exoplanets, including their chemical compositions, thermal transport behavior, origin of magnetic fields, and dynamic evolution of the planet.

58 GEOSCIENCES↗

Characterizing falling particle curtain receivers at commercially relevant scales: Research Performance Progress Report (RPPR-1)

Sandia will construct a cold flow receiver test platform in order to characterize falling particle curtain receivers at commercially relevant scales. While Sandia has extensive experience in R&D of falling particle curtain receivers, most have been at pilot scale and smaller - on the order of 1 MW th with characteristic dimensions of nominally 1-2 m to adequately collect solar energy from the heliostat field at the National Solar Thermal Test Facility (NSTTF). However, scaling up receivers to commercially relevant scales (25 MW th and above) will require a thorough understanding of particle curtain dynamics at larger scales, especially longer drop heights, for design certainty. The goal of this project will be to construct a cold falling particle curtain test rig capable of simulating particle characteristics that are expected in a commercial scale CSP plant, namely the drop height, curtain thickness, and particle mass flow rate (normalized by length of curtain). This will enable data collection on curtain opacity and spread, both of which are correlated to receiver efficiency and reliable construction, for commercially relevant scales. It will also permit validation of numerical models that will enable detailed receiver characterization and design past currently validated scales.

14 SOLAR ENERGY↗

Characterizing falling particle curtain receivers at commercially relevant scales: Research Performance Progress Report (RPPR-1)

Sandia will construct a cold flow receiver test platform in order to characterize falling particle curtain receivers at commercially relevant scales. While Sandia has extensive experience in R&D of falling particle curtain receivers, most have been at pilot scale and smaller - on the order of 1 MWth with characteristic dimensions of nominally 1-2 m to adequately collect solar energy from the heliostat field at the National Solar Thermal Test Facility (NSTTF). However, scaling up receivers to commercially relevant scales (25 MWth and above) will require a thorough understanding of particle curtain dynamics at larger scales, especially longer drop heights, for design certainty. The goal of this project will be to construct a cold falling particle curtain test rig capable of simulating particle characteristics that are expected in a commercial scale CSP plant, namely the drop height, curtain thickness, and particle mass flow rate (normalized by length of curtain). This will enable data collection on curtain opacity and spread, both of which are correlated to receiver efficiency and reliable construction, for commercially relevant scales. It will also permit validation of numerical models that will enable detailed receiver characterization and design past currently validated scales.

14 SOLAR ENERGY↗

Structural Characterization of Toxicologically Relevant Cd 2+ -L-Cysteine Complexes

The exposure of humans to Cd exerts adverse human health effects at low chronic exposure doses, but the underlying biomolecular mechanisms are incompletely understood. To gain insight into the toxicologically relevant chemistry of Cd 2+ in the bloodstream, we employed an anion-exchange HPLC coupled to a flame atomic absorption spectrometer (FAAS) using a mobile phase of 100 mM NaCl with 5 mM Tris-buffer (pH 7.4) to resemble protein-free blood plasma. The injection of Cd 2+ onto this HPLC-FAAS system was associated with the elution of a Cd peak that corresponded to [CdCl 3 ] - /[CdCl 4 ] 2- complexes. The addition of 0.1–10 mM L-cysteine (Cys) to the mobile phase significantly affected the retention behavior of Cd 2+ , which was rationalized by the on-column formation of mixed CdCysxCly complexes. From a toxicological point of view, the results obtained with 0.1 and 0.2 mM Cys were the most relevant because they resembled plasma concentrations. The corresponding Cd-containing (~30 μM) fractions were analyzed by X-ray absorption spectroscopy and revealed an increased sulfur coordination to Cd 2+ when the Cys concentration was increased from 0.1 to 0.2 mM. The putative formation of these toxicologically relevant Cd species in blood plasma was implicated in the Cd uptake into target organs and underscores the notion that a better understanding of the metabolism of Cd in the bloodstream is critical to causally link human exposure with organ-based toxicological effects.

59 BASIC BIOLOGICAL SCIENCES↗

Machine Learning for Identifying Relevance to Biosurveillance in Multilingual Text

Objective: The objective is to develop an ensemble of machine learning algorithms to identify multilingual, online articles that are relevant to biosurveillance. Language morphology varies widely across languages and must be accounted for when designing algorithms. Here, we compare the performance of a word embedding-based approach and a topic modeling approach with machine learning algorithms to determine the best method for Chinese, Arabic, and French languages. Introduction: Global biosurveillance is an extremely important, yet challenging task. One form of global biosurveillance comes from harvesting open source online data (e.g. news, blogs, reports, RSS feeds). The information derived from this data can be used for timely detection and identification of biological threats all over the world. However, the more inclusive the data harvesting procedure is to ensure that all potentially relevant articles are collected, the more data that is irrelevant also gets harvested. This issue can become even more complex when the online data is in a non-native language. Foreign language articles not only create language-specific issues for Natural Language Processing (NLP), but also add a significant amount of translation costs. Previous work shows success in the use of combinatory monolingual classifiers in specific applications, e.g., legal domain [1]. A critical component for a comprehensive, online harvesting biosurveillance system is the capability to identify relevant foreign language articles from irrelevant ones based on the initial article information collected, without the additional cost of full text retrieval and translation.

Machine learning↗

Control-Relevant Modeling, Analysis, and Design for Scramjet-Powered Hypersonic Vehicles

Within this paper, control-relevant vehicle design concepts are examined using a widely used 3 DOF (plus flexibility) nonlinear model for the longitudinal dynamics of a generic carrot-shaped scramjet powered hypersonic vehicle. Trade studies associated with vehicle/engine parameters are examined. The impact of parameters on control-relevant static properties (e.g. level-flight trimmable region, trim controls, AOA, thrust margin) and dynamic properties (e.g. instability and right half plane zero associated with flight path angle) are examined. Specific parameters considered include: inlet height, diffuser area ratio, lower forebody compression ramp inclination angle, engine location, center of gravity, and mass. Vehicle optimizations is also examined. Both static and dynamic considerations are addressed. The gap-metric optimized vehicle is obtained to illustrate how this control-centric concept can be used to "reduce" scheduling requirements for the final control system. A classic inner-outer loop control architecture and methodology is used to shed light on how specific vehicle/engine design parameter selections impact control system design. In short, the work represents an important first step toward revealing fundamental tradeoffs and systematically treating control-relevant vehicle design.

Rodriguez, Armando A.↗

Development of Increasingly Autonomous Traffic Data Manager Using Pilot Relevancy and Ranking Data

NASA's Safe Autonomous Systems Operations (SASO) project goal is to define and safely enable all future airspace operations by justifiable and optimal autonomy for advanced air, ground, and connected capabilities. This work showcases how Increasingly Autonomous Systems (IAS) could create operational transformations beneficial to the enhancement of civil aviation safety and efficiency. One such IAS under development is the Traffic Data Manager (TDM). This concept is a prototype 'intelligent party-line' system that would declutter and parse out non-relevant air traffic, displaying only relevant air traffic to the aircrew in a digital data communications (Data Comm) environment. As an initial step, over 22,000 data points were gathered from 31 Airline Transport Pilots to train the machine learning algorithms designed to mimic human experts and expertise. The test collection used an analog of the Navigation Display. Pilots were asked to rate the relevancy of the displayed traffic using an interactive tablet application. Pilots were also asked to rank the order of importance of the information given, to better weight the variables within the algorithm. They were also asked if the information given was enough data, and more importantly the "right" data to best inform the algorithm. The paper will describe the findings and their impact to the further development of the algorithm for TDM and, in general, address the issue of how can we train supervised machine learning algorithms, critical to increasingly autonomous systems, with the knowledge and expertise of expert human pilots.

Le Vie, Lisa R.↗

Quantifying the Relevance of Prompt Dissociations of Resonance Stabilized Free Radicals in Flames

In prior studies from our laboratory we have shown that weakly-bound free radicals have a propensity to promptly dissociate at elevated temperatures relevant to flames. Dissociation can occur so rapidly at high temperatures in such weakly-bound radicals that it interferes with collisional relaxation of internal energies leading to prompt dissociation. While prompt dissociation is a ubiquitous feature in such free radical dissociations, we have hypothesized that its relevance to global combustion observables such as flame speeds depends on satisfying specific criteria. Two criteria that motivate the present study are that the free radicals must play a central role in the oxidation mechanism and that their thermal dissociation rate coefficients should be small enough. Resonance stabilized radicals have bond strengths ~ 50 kcal/mol (or larger) and consequently are known to dissociate slowly and persist even in high temperature environments. In this work we have calculated prompt dissociation probabilities for some simple allylic (allyl, methyl allyl, and dimethyl allyl) radicals. Flame simulations were performed to quantify the relevance of including prompt dissociations of these allylic radicals.

Allyl Radicals↗

Biogenic coal-to-methane conversion can be enhanced with small additions of algal amendment in field-relevant upflow column reactors

Subsurface coal environments, where biogenic coal-to-methane conversion occurs, are difficult to access, resulting in inherent challenges and expenses for in situ experiments. Previous batch reactor studies provided insights into specific processes, pathways, kinetics, and engineering strategies, but field-relevance is restricted due to limited substrate availability or byproduct accumulation that may influence reactions or metabolisms. In this study, continuous-flow column reactors were used to overcome some batch limitations, improve the understanding of in situ conditions, and increase field-relevance for subsurface engineering technology development. The bench-scale reactor system was constructed to investigate the addition of algal amendment for enhancing microbial coal-to-methane conversion previously developed in batch systems. Four reactor columns were packed with coal and inoculated with a microbial consortium from the same Flowers-Goodale coal bed. Two reactors were amended with 13 C-labeled algal amendment on day 0, and two were unamended. On day 61, one previously amended and one previously unamended reactor were re-amended. Produced gases were captured in a gas trap, and CH 4 and CO 2 were quantified. The reactor amended twice produced 1712.6 µmol CH 4 (4.6% as 13 CH 4 ). The reactor amended only on day 0 produced 1485.5 µmol CH 4 (2.6% as 13 CH 4 ). The reactor amended only on day 61 produced 278.9 µmol CH 4 (3.9% as 13 CH 4 ). The reactor with no amendment produced no measurable gases for the duration of the 172-day experiment. Amendment increased the rate of coal-to-methane conversion and total gas production; most of the produced gases were due to coal conversion with only small contributions (<7%) from amendment conversion.

09 BIOMASS FUELS↗

Relevancy 101

Where we present an overview on why relevancy is a problem, how important it is and how we can improve it. The topic of relevancy is becoming increasingly important in earth data discovery as our audience is tuned to the accuracy of standard search engines like Google.

heuristic↗

Quantifying Kinetically Relevant Species on Zr‐SiO 2 Materials for MPV Reduction

Abstract On supported metal catalysts such as Zr‐SiO 2 , it can be challenging to isolate characteristics that result from intrinsic properties of the active site from those that result from the environment surrounding the active site. In this report, we utilize in situ titration of Lewis acid sites with phosphonic acid to accurately and quantitatively describe kinetically relevant Zr species on Zr‐SiO 2 materials for the MPV reduction of cyclohexanone. We find that rate of MPV reduction on Zr‐SiO 2 materials can be described as a combination of rate over titratable Zr, that is likely well dispersed Zr, and rate over non‐titratable Zr, that is likely supported ZrO x . The fraction of Zr that is well dispersed on the SiO 2 is dependent on the surface density at which Zr is grafted but not the choice of Zr precursor. We demonstrate that phosphonic acid titration can offer a more relevant, quantitative description of Zr dispersion than UV‐vis and can be used to quantitatively describe changes that occur to the material during regeneration.

Chase, Emily↗

Recommendations for Dose Selection for Adolescent Patients in Relevant Adult Oncology Clinical Trials

Our research supported the dose selection recommendations for adolescents in the US Food and Drug Administration (FDA) Guidance on Inclusion of Adolescent Patients in Adult Oncology Clinical Trials. The FDA Guidance states that for drugs administered as a flat dose in adults and data showing no clinically meaningful effect of body size on drug exposure and toxicity in adults, a minimum body weight threshold may need to be defined to prevent adolescents who have a lower body weight from exceeding adult exposures. Our review of adult population pharmacokinetic analyses of new molecular entities approved for oncology between January 2015 and March 2021 suggested that 40 kg (the approximate median body weight of a 12-year-old) is generally the lower end of the body weight range that has no clinically relevant effect on drug pharmacokinetics or safety. In conclusion, the minimum body weight threshold and selection of an appropriate dose for adolescents in relevant adult oncology clinical trials should ultimately be determined based on available data on pharmacokinetics or pharmacodynamics of the investigational drug with consideration of body size effect on drug exposure, toxicity, and efficacy data (if available), the therapeutic index of the drug, and dose- and exposure-response relationships in adults.

60 APPLIED LIFE SCIENCES↗

Rhizobacteria Mediate the Phytotoxicity of a Range of Biorefinery‐Relevant Compounds

Abstract Advances in engineering biology have expanded the list of renewable compounds that can be produced at scale via biological routes from plant biomass. In most cases, these chemical products have not been evaluated for effects on biological systems, defined in the present study as bioactivity, that may be relevant to their manufacture. For sustainable chemical and fuel production, the industry needs to transition from fossil to renewable carbon sources, resulting in unprecedented expansion in the production and environmental distribution of chemicals used in biomanufacturing. Further, although some chemicals have been assessed for mammalian toxicity, environmental and agricultural hazards are largely unknown. We assessed 6 compounds that are representative of the emerging biofuel and bioproduct manufacturing process for their effect on model plants ( Arabidopsis thaliana , Sorghum bicolor ) and show that several alter plant seedling physiology at submillimolar concentrations. However, these responses change in the presence of individual bacterial species from the A. thaliana root microbiome. We identified 2 individual microbes that change the effect of chemical treatment on root architecture and a pooled microbial community with different effects relative to its constituents individually. The present study indicates that screening industrial chemicals for bioactivity on model organisms in the presence of their microbiomes is important for biologically and ecologically relevant risk analyses. Environ Toxicol Chem 2019;38:1911–1922. © 2019 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals, Inc. on behalf of SETAC.

09 BIOMASS FUELS↗

Can machine learning accelerate process understanding and decision‐relevant predictions of river water quality?

Abstract The global decline of water quality in rivers and streams has resulted in a pressing need to design new watershed management strategies. Water quality can be affected by multiple stressors including population growth, land use change, global warming, and extreme events, with repercussions on human and ecosystem health. A scientific understanding of factors affecting riverine water quality and predictions at local to regional scales, and at sub‐daily to decadal timescales are needed for optimal management of watersheds and river basins. Here, we discuss how machine learning (ML) can enable development of more accurate, computationally tractable, and scalable models for analysis and predictions of river water quality. We review relevant state‐of‐the art applications of ML for water quality models and discuss opportunities to improve the use of ML with emerging computational and mathematical methods for model selection, hyperparameter optimization, incorporating process knowledge into ML models, improving explainablity, uncertainty quantification, and model‐data integration. We then present considerations for using ML to address water quality problems given their scale and complexity, available data and computational resources, and stakeholder needs. When combined with decades of process understanding, interdisciplinary advances in knowledge‐guided ML, information theory, data integration, and analytics can help address fundamental science questions and enable decision‐relevant predictions of riverine water quality.

54 ENVIRONMENTAL SCIENCES↗

A Pareto analysis approach to assess relevant marginal CO{sub 2} footprint for petroleum products

Recently, linear programing (LP) models have been extended to track the marginal CO{sub 2} intensity of automotive fuels at the refinery gate. The obtained CO{sub 2} data are recommended for policy making because they capture the economic and environmental tensions as well as the processing effects related to oil products. However, they are proven to be extremely sensitive to small perturbations and therefore useless in practice. In this paper, we first investigate the theoretical reasons of this drawback. Then, we develop a multiple objective LP framework to assess relevant marginal CO{sub 2} footprints that preserve both defensibility and stability at a satisfactory level of acceptance. A case study illustrates this new methodology. - Highlights: • Refining LP models have limitations to provide useful marginal CO{sub 2} footprints. • A multi objective optimization framework is developed to assess relevant CO{sub 2} data. • Within a European Refinig industry, diesel is more CO{sub 2} intensive than gasoline.

54 ENVIRONMENTAL SCIENCES↗

Sustainable transportation according to certification systems: A viability analysis based on neighborhood size and context relevance

Urban sustainability certification (USC) systems comprehensively assess and benchmark the sustainability of neighborhoods, communities, etc. However, it is important to understand what USCs mean by neighborhoods and communities in terms of definition and their certified developments' size. This study focuses on sustainable transportation and its measures in USCs in order to discern: how relevant are these measures to the varied local conditions, especially in developing countries? And whether they can generate palpable benefits vis-à-vis the certified developments' site areas. Taking descriptive analysis methods, this study focuses on four prominent USCs, namely, LEED for Neighborhood Development, BREEAM Communities, CASBEE for Urban Development, and The Pearl Community Rating System. The four USCs prescribed multiple measures for sustainable transportation, particularly in favor of active transportation and public transportation. However, the relatively small size of their citified developments and the varying transportation conditions among different contexts attenuate the viability and relevance of the advocated measures for both modes. In order to yield more benefits, USCs should underscore the integrative nature of neighborhoods and communities, and transportation within their prescribed criteria and measures. Moreover, sustainable transportation as a theme should be tailored to the local conditions rather than being adopted or adapted from global USCs. - Highlights: • Transportation measures in four prominent certification systems were investigated. • Most certified neighborhoods, communities and developments have small site areas. • Certifications are insensitive to realities of transport in developing countries. • Benefits from advocating active transport only within certified areas are minimal. • Certifications devalue the integrative nature of neighborhoods and transportation.

54 ENVIRONMENTAL SCIENCES↗