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At least 91 records · Page 5

A Scientific Data Provenance Harvester for Distributed Applications

Data provenance provides a way for scientists to observe how experimental data originates, conveys process history, and explains influential factors such as experimental rationale and associated environmental factors from system metrics measured at runtime. The US Department of Energy Office of Science Integrated end-to-end Performance Prediction and Diagnosis for Extreme Scientific Workflows (IPPD) project has developed a provenance harvester that is capable of collecting observations from file based evidence typically produced by distributed applications. To achieve this, file based evidence is extracted and transformed into an intermediate data format inspired in part by W3C CSV on the Web recommendations, called the Harvester Provenance Application Interface (HAPI) syntax. This syntax provides a general means to pre-stage provenance into messages that are both human readable and capable of being written to a provenance store, Provenance Environment (ProvEn). HAPI is being applied to harvest provenance from climate ensemble runs for Accelerated Climate Modeling for Energy (ACME) project funded under the U.S. Department of Energy’s Office of Biological and Environmental Research (BER) Earth System Modeling (ESM) program. ACME informally provides provenance in a native form through configuration files, directory structures, and log files that contain success/failure indicators, code traces, and performance measurements. Because of its generic format, HAPI is also being applied to harvest tabular job management provenance from Belle II DIRAC scheduler relational database tables as well as other scientific applications that log provenance related information.

Stephan, Eric G.↗

Mobile Collection and Automated Interpretation of EEG Data

A system that would comprise mobile and stationary electronic hardware and software subsystems has been proposed for collection and automated interpretation of electroencephalographic (EEG) data from subjects in everyday activities in a variety of environments. By enabling collection of EEG data from mobile subjects engaged in ordinary activities (in contradistinction to collection from immobilized subjects in clinical settings), the system would expand the range of options and capabilities for performing diagnoses. Each subject would be equipped with one of the mobile subsystems, which would include a helmet that would hold floating electrodes (see figure) in those positions on the patient s head that are required in classical EEG data-collection techniques. A bundle of wires would couple the EEG signals from the electrodes to a multi-channel transmitter also located in the helmet. Electronic circuitry in the helmet transmitter would digitize the EEG signals and transmit the resulting data via a multidirectional RF patch antenna to a remote location. At the remote location, the subject s EEG data would be processed and stored in a database that would be auto-administered by a newly designed relational database management system (RDBMS). In this RDBMS, in nearly real time, the newly stored data would be subjected to automated interpretation that would involve comparison with other EEG data and concomitant peer-reviewed diagnoses stored in international brain data bases administered by other similar RDBMSs.

Mintz, Frederick↗

Collaborative Resource Allocation

Collaborative Resource Allocation Networking Environment (CRANE) Version 0.5 is a prototype created to prove the newest concept of using a distributed environment to schedule Deep Space Network (DSN) antenna times in a collaborative fashion. This program is for all space-flight and terrestrial science project users and DSN schedulers to perform scheduling activities and conflict resolution, both synchronously and asynchronously. Project schedulers can, for the first time, participate directly in scheduling their tracking times into the official DSN schedule, and negotiate directly with other projects in an integrated scheduling system. A master schedule covers long-range, mid-range, near-real-time, and real-time scheduling time frames all in one, rather than the current method of separate functions that are supported by different processes and tools. CRANE also provides private workspaces (both dynamic and static), data sharing, scenario management, user control, rapid messaging (based on Java Message Service), data/time synchronization, workflow management, notification (including emails), conflict checking, and a linkage to a schedule generation engine. The data structure with corresponding database design combines object trees with multiple associated mortal instances and relational database to provide unprecedented traceability and simplify the existing DSN XML schedule representation. These technologies are used to provide traceability, schedule negotiation, conflict resolution, and load forecasting from real-time operations to long-range loading analysis up to 20 years in the future. CRANE includes a database, a stored procedure layer, an agent-based middle tier, a Web service wrapper, a Windows Integrated Analysis Environment (IAE), a Java application, and a Web page interface.

Wang, Yeou-Fang↗

Shuttle Hypervelocity Impact Database

With three flights remaining on the manifest, the shuttle impact hypervelocity database has over 2800 entries. The data is currently divided into tables for crew module windows, payload bay door radiators and thermal protection system regions, with window impacts compromising just over half the records. In general, the database provides dimensions of hypervelocity impact damage, a component level location (i.e., window number or radiator panel number) and the orbiter mission when the impact occurred. Additional detail on the type of particle that produced the damage site is provided when sampling data and definitive analysis results are available. The paper will provide details and insights on the contents of the database including examples of descriptive statistics using the impact data. A discussion of post flight impact damage inspection and sampling techniques that were employed during the different observation campaigns will be presented. Future work to be discussed will be possible enhancements to the database structure and availability of the data for other researchers. A related database of ISS returned surfaces that are under development will also be introduced.

Hyde, James I.↗

Database for Safety-Oriented Tracking of Chemicals

SafetyChem is a computer program that maintains a relational database for tracking chemicals and associated hazards at Johnson Space Center (JSC) by use of a Web-based graphical user interface. The SafetyChem database is accessible to authorized users via a JSC intranet. All new chemicals pass through a safety office, where information on hazards, required personal protective equipment (PPE), fire-protection warnings, and target organ effects (TOEs) is extracted from material safety data sheets (MSDSs) and recorded in the database. The database facilitates real-time management of inventory with attention to such issues as stability, shelf life, reduction of waste through transfer of unused chemicals to laboratories that need them, quantification of chemical wastes, and identification of chemicals for which disposal is required. Upon searching the database for a chemical, the user receives information on physical properties of the chemical, hazard warnings, required PPE, a link to the MSDS, and references to the applicable International Standards Organization (ISO) 9000 standard work instructions and the applicable job hazard analysis. Also, to reduce the labor hours needed to comply with reporting requirements of the Occupational Safety and Health Administration, the data can be directly exported into the JSC hazardous- materials database.

Stump, Jacob↗

SU-E-T-51: Bayesian Network Models for Radiotherapy Error Detection

Purpose: To develop a probabilistic model of radiotherapy plans using Bayesian networks that will detect potential errors in radiation delivery. Methods: Semi-structured interviews with medical physicists and other domain experts were employed to generate a set of layered nodes and arcs forming a Bayesian Network (BN) which encapsulates relevant radiotherapy concepts and their associated interdependencies. Concepts in the final network were limited to those whose parameters are represented in the institutional database at a level significant enough to develop mathematical distributions. The concept-relation knowledge base was constructed using the Web Ontology Language (OWL) and translated into Hugin Expert Bayes Network files via the the RHugin package in the R statistical programming language. A subset of de-identified data derived from a Mosaiq relational database representing 1937 unique prescription cases was processed and pre-screened for errors and then used by the Hugin implementation of the Estimation-Maximization (EM) algorithm for machine learning all parameter distributions. Individual networks were generated for each of several commonly treated anatomic regions identified by ICD-9 neoplasm categories including lung, brain, lymphoma, and female breast. Results: The resulting Bayesian networks represent a large part of the probabilistic knowledge inherent in treatment planning. By populating the networks entirely with data captured from a clinical oncology information management system over the course of several years of normal practice, we were able to create accurate probability tables with no additional time spent by experts or clinicians. These probabilistic descriptions of the treatment planning allow one to check if a treatment plan is within the normal scope of practice, given some initial set of clinical evidence and thereby detect for potential outliers to be flagged for further investigation. Conclusion: The networks developed here support the use of probabilistic models into clinical chart checking for improved detection of potential errors in RT plans.

60 APPLIED LIFE SCIENCES↗

Client/server study

The goal of this project is to find cost-effective and efficient strategies/solutions to integrate existing databases, manage network, and improve productivity of users in a move towards client/server and Integrated Desktop Environment (IDE) at NASA LeRC. The project consisted of two tasks as follows: (1) Data collection, and (2) Database Development/Integration. Under task 1, survey questionnaires and a database were developed. Also, an investigation on commercially available tools for automated data-collection and net-management was performed. As requirements evolved, the main focus has been task 2 which involved the following subtasks: (1) Data gathering/analysis of database user requirements, (2) Database analysis and design, making recommendations for modification of existing data structures into relational database or proposing a common interface to access heterogeneous databases(INFOMAN system, CCNS equipment list, CCNS software list, USERMAN, and other databases), (3) Establishment of a client/server test bed at Central State University (CSU), (4) Investigation of multi-database integration technologies/ products for IDE at NASA LeRC, and (5) Development of prototypes using CASE tools (Object/View) for representative scenarios accessing multi-databases and tables in a client/server environment. Both CSU and NASA LeRC have benefited from this project. CSU team investigated and prototyped cost-effective/practical solutions to facilitate NASA LeRC move to a more productive environment. CSU students utilized new products and gained skills that could be a great resource for future needs of NASA.

Dezhgosha, Kamyar↗

Radiation Data Portal: Connection of Radiation Measurements on Airplane Flights with Observations of Solar-Terrestrial Environment

The impact of solar radiation dramatically increases at high altitudes in the Earth’s atmosphere and in space. Therefore, continuous monitoring of the radiation environment is critical for the safety of aircraft and spacecraft crews and passengers. Addressing the problem requires a complex approach of integration of different data sources and enhancement of the visualization and search capabilities. The Radiation Portal Database represents an interactive web-based application for convenient search and visualization of in-flight radiation measurements and exploration of various properties related to the radiation environment. The primary element of the Radiation Portal back-end is a MySQL relational database that currently contains the radiation measurements obtained from the Automated Radiation Measurements for Aerospace Safety (ARMAS)device, and soft X-ray and proton fluxes from Geostationary Orbiting Environmental Satellite (GOES). The developed Application Programming Interface (API) and related Python routines allow a user to retrieve the database records directly and efficiently, without interaction with the web interface. As a use case of the Radiation Portal, we examine the properties of the ARMAS flights taken during the enhanced Solar Proton (SP) fluxes and compare them to the flights of similar time and location taken during SP-quiet periods.

SMD↗

Tropospheric Ozone Assessment Report: Database and Metrics Data of Global Surface Ozone Observations

In support of the first Tropospheric Ozone Assessment Report (TOAR) a relational database of global surface ozone observations has been developed and populated with hourly measurement data and enhanced metadata. A comprehensive suite of ozone data products including standard statistics, health and vegetation impact metrics, and trend information, are made available through a common data portal and a web interface. These data form the basis of the TOAR analyses focusing on human health, vegetation, and climate relevant ozone issues, which are part of this special feature. Cooperation among many data centers and individual researchers worldwide made it possible to build the world's largest collection of in-situ hourly surface ozone data covering the period from 1970 to 2015. By combining the data from almost 10,000 measurement sites around the world with global metadata information, new analyses of surface ozone have become possible, such as the first globally consistent characterisations of measurement sites as either urban or rural/remote. Exploitation of these global metadata allows for new insights into the global distribution, and seasonal and long-term changes of tropospheric ozone and they enable TOAR to perform the first, globally consistent analysis of present-day ozone concentrations and recent ozone changes with relevance to health, agriculture, and climate. Considerable effort was made to harmonize and synthesize data formats and metadata information from various networks and individual data submissions. Extensive quality control was applied to identify questionable and erroneous data, including changes in apparent instrument offsets or calibrations. Such data were excluded from TOAR data products. Limitations of a posteriori data quality assurance are discussed. As a result of the work presented here, global coverage of surface ozone data for scientific analysis has been significantly extended. Yet, large gaps remain in the surface observation network both in terms of regions without monitoring, and in terms of regions that have monitoring programs but no public access to the data archive. Therefore future improvements to the database will require not only improved data harmonization, but also expanded data sharing and increased monitoring in data-sparse regions.

54 ENVIRONMENTAL SCIENCES↗

Heterogeneous distributed databases: A case study

Alternatives are reviewed for accessing distributed heterogeneous databases and a recommended solution is proposed. The current study is limited to the Automated Information Systems Center at the Naval Sea Combat Systems Engineering Station at Norfolk, VA. This center maintains two databases located on Digital Equipment Corporation's VAX computers running under the VMS operating system. The first data base, ICMS, resides on a VAX11/780 and has been implemented using VAX DBMS, a CODASYL based system. The second database, CSA, resides on a VAX 6460 and has been implemented using the ORACLE relational database management system (RDBMS). Both databases are used for configuration management within the U.S. Navy. Different customer bases are supported by each database. ICMS tracks U.S. Navy ships and major systems (anti-sub, sonar, etc.). Even though the major systems on ships and submarines have totally different functions, some of the equipment within the major systems are common to both ships and submarines.

Stewart, Tracy R.↗

An Object-oriented Query Processor that Produces Monotonically Improving Approximate Answers

The paper describes an object-oriented query processor that makes approximate answers available if there is not enough time to produce an exact answer or if part of the database is unavailable. The accuracy of the approximate result produces improves monotonically with the amount of data retrieved to produce the result. The query processing algorithm is based on an approximate relational data model and works within a standard relational algebra framework. The query processor maintains an object-oriented view on an underlying level and can be implemented on a relational database system with little change to the relational architecture. We show how a monotone query processing strategy can be implemented, making effective use of semantic information presented by the object-oriented view.

Vrbsky, S. V.↗

The Materials Provenance Store

Abstract We present a database resulting from high throughput experimentation, primarily on metal oxide solid state materials. The central relational database, the Materials Provenance Store (MPS), manages the metadata and experimental provenance from acquisition of raw materials, through synthesis, to a broad range of materials characterization techniques. Given the primary research goal of materials discovery of solar fuels materials, many of the characterization experiments involve electrochemistry, along with optical, structural, and compositional characterizations. The MPS is populated with all information required for executing common data queries, which typically do not involve direct query of raw data. The result is a database file that can be distributed to users so that they can independently execute queries and subsequently download the data of interest. We propose this strategy as an approach to manage the highly heterogeneous and distributed data that arises from materials science experiments, as demonstrated by the management of over 30 million experiments run on over 12 million samples in the present MPS release.

36 MATERIALS SCIENCE↗

Insert Modeling in UNF ST&DARDS

The Used Nuclear Fuel-Storage, Transportation & Disposal Analysis Resource and Data System (UNF-ST&DARDS) is a software tool that integrates a used nuclear fuel (UNF) or spent nuclear fuel (SNF) relational database and key analysis capabilities to simplify and automate numerous UNF management and fuel cycle–related activities. UNF-ST&DARDS is being developed for the US Department of Energy’s Office of Nuclear Energy Spent Fuel and Waste Disposition program. UNF-ST&DARDS provides an integrated framework that uses advanced modeling and simulation to predict the behavior of SNF over the timescales associated with permanent disposal in a geologic repository. After leaving the spent fuel pool, SNF is transferred to dry storage in a dual-purpose canister (DPC). DPCs are considered “dual purpose” because they are designed for both storage and transportation, removing the need to transfer the fuel to a separate transportation cask. However, much research has been conducted investigating the feasibility of directly disposing of DPCs in geologic repositories. Direct disposal of DPCs could reduce worker exposure during repackaging, reducing the amount of low-level waste from the discarded DPCs and potentially saving billions of dollars. Therefore, direct disposal of as-loaded DPCs is desirable if it can be done safely.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Database Design Strategies for Coordinated Simulation and Testing in Additive Manufacturing

The qualification and certification (Q&C) process presents a significant challenge for widespread adoption of additive manufacturing (AM) materials and processes for aerospace applications. A relational database framework will be presented as a tool for data curation of coordinated experimental and computational materials modeling research activities. A comparison of relational and hierarchical data structures in this domain will be emphasized through the evolution of a database design strategy. This framework’s mission is to support the advancement of computational materials-informed Q&C by providing the necessary data infrastructure to trace reliability and reproducibility measures through unified AM materials simulation and experimental testing. FAIR (findable, accessible, interoperable, and reusable) data will be highlighted as a necessary precursor for automation of specific actions, which ultimately reduces the time and expense burden for Q&C. The discussion will be mostly limited to back-end design elements, though a few front-end user experience examples will also be shared.

Qualification↗

Artificial intelligence techniques for modeling database user behavior

The design and development of the adaptive modeling system is described. This system models how a user accesses a relational database management system in order to improve its performance by discovering use access patterns. In the current system, these patterns are used to improve the user interface and may be used to speed data retrieval, support query optimization and support a more flexible data representation. The system models both syntactic and semantic information about the user's access and employs both procedural and rule-based logic to manipulate the model.

Tanner, Steve↗

Streamlining analysis capabilities for SNF management - 15490

A comprehensive, integrated data and analysis tool-the Used Nuclear Fuel-Storage, Transportation and Disposal Analysis Resource and Data System (UNF-ST and DARDS) -is being developed for the US DOE Office of Nuclear Energy (DOE-NE) Nuclear Fuels Storage and Transportation Planning Project (NFST). The overarching goal of UNF-ST and DARDS is to provide a comprehensive controlled source of technical data integrated with key analysis capabilities to characterize inputs to the overall US waste management system from reactor power production through ultimate disposition. UNF-ST and DARDS seamlessly integrates a unified SNF system relational database and key analysis capabilities to simplify and automate the performance of accurate and efficient SNF related analyses to support numerous DOE waste management and fuel cycle activities. Hence, UNF-ST and DARDS enables decision making relative to design, safety, and licensing of SNF systems and facilities by providing the best information available. Automated analysis sequences have been deployed to characterize the discharge inventory and perform criticality, thermal, and dose analyses using time-dependent data. UNF-ST and DARDS provides cask-specific as-loaded safety analysis including criticality, thermal and dose evaluations, as well as results visualization. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Using GIS for Processing, Analysis and Visualization of Hydrological Model Data - 16202

The Applied Research Center at Florida International University (ARC-FIU) is supporting the soil and groundwater remediation efforts of the U.S. Department of Energy's (DOE's) Savannah River Site (SRS) by developing a surface water model to simulate the hydrology and the fate and transport of contaminants and sediment in the Tims Branch watershed. Advances in ArcGIS software through the development of spatial GIS database (geo-database) technology, coupled with the development of data models such as ArcHydro which possesses a spatial relational database management system (RDMS) schema and relationship structure specific to hydrologic systems, provides modelers with tools and applications to assist in the processing, analysis and visualization of flow and contaminant transport data. In addition, the coupling of this type of geo-database structure with a numerical modeling package such as MIKE SHE/MIKE 11 can serve as an efficient tool that significantly reduces the time needed for data preparation. The MIKE modeling system has a geographic information systems (GIS) user interface built into its system that can directly use GIS data for model inputs. GIS-based hydrologic models can provide a spatial element that other hydrologic models lack. GIS is important for processing and analysis of large spatio-temporal datasets derived from multiple sources that are being used for setting up of models, model calibration and simulation of flow and contaminant fate and transport. GIS-based approaches in hydrological modeling can also provide the benefit of combining different layers of geographic data to create new integrated information which can be quite useful for creating dependent or independent hydrological variables. ARC-FIU has developed an ArcGIS geo-database to support the hydrological modeling work being conducted at SRS. The SRS geo-database was developed based on the ArcHydro and ArcGIS Base Map data models with modifications made for project specific input parameters. The significance of this approach was to ensure its replicability for potential application at other DOE sites. The SRS geo-database assists in the storage and management of GIS and time series data being used for hydrological model development at Savannah River Site. Other GIS tools such as ArcGIS Model Builder coupled with Python scripting have enabled the automation of many of the repetitive geo-processing tasks required for pre- and post-processing of the hydrological modeling data. Automation of many of the data processing tasks has facilitated faster and hence more complex analyses of field test data. The toolbox created is also a scalable and reusable application that can be implemented in other watersheds. This paper describes the use of ArcGIS tools for the pre-processing, spatial delineation and analysis of hydrological model data; for automation of repetitive geo-processing tasks; and for visualization of different hydrological components of the Tims Branch watershed. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

SQL and NoSQL Databases for Cyber Physical Production Systems in Internet of Things for Manufacturing (IoTfM)

Abstract In this paper, the design and performance differences between Relational Database Management Systems (RDBMS) and NoSQL Database Systems are examined, with attention to their applicability for real-world Internet of Things for manufacturing (IoTfM) data. While previous work has extensively compared SQL and NoSQL for both generalized and IoT uses, this work specifically examines the tradeoffs and performance differences for manufacturing applications by using a high-fidelity data set collected from a large US manufacturing firm. Growing an IoT system beyond the pilot stage requires scalable data storage; this work seeks to determine the impact of selected database systems on data write performance at scale. Payload size and message frequency were used as the primary characteristics to maintain model fidelity in simulated clients. As the number of simulated asset clients grow, the data write latency was calculated to determine how both database systems’ performance were affected. To isolate the RDBMS and NoSQL differences, a cloud environment was created using Amazon Web Services (AWS) with two identical data ingestion pipelines: writing data to an RDMBS (1) using AWS Aurora MySQL, and (2) using AWS DynamoDB NoSQL. The findings may provide guidance for further experimentation in large-scale manufacturing IoT implementations.

Gamero, David↗