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All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

From primordial clocks to circadian oscillators

Circadian rhythms play an essential part in many biological processes, and only three prokaryotic proteins are required to constitute a true post-translational circadian oscillator1. The evolutionary history of the three Kai proteins indicates that KaiC is the oldest member and a central component of the clock. Subsequent additions of KaiB and KaiA regulate the phosphorylation state of KaiC for time synchronization. The canonical KaiABC system in cyanobacteria is well understood but little is known about more ancient systems that only possess KaiBC. However, there are reports that they might exhibit a basic, hourglass-like timekeeping mechanism. Here we investigate the primordial circadian clock in Rhodobacter sphaeroides , which contains only KaiBC, to elucidate its inner workings despite missing KaiA. Using a combination of X-ray crystallography and cryogenic electron microscopy, we find a new dodecameric fold for KaiC, in which two hexamers are held together by a coiled-coil bundle of 12 helices. This interaction is formed by the carboxy-terminal extension of KaiC and serves as an ancient regulatory moiety that is later superseded by KaiA. A coiled-coil register shift between daytime and night-time conformations is connected to phosphorylation sites through a long-range allosteric network that spans over 140 Å. Our kinetic data identify the difference in the ATP-to-ADP ratio between day and night as the environmental cue that drives the clock. They also unravel mechanistic details that shed light on the evolution of self-sustained oscillators.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Constraints on primordial non-Gaussianity from the cross-correlation of DESI luminous red galaxies and Planck CMB lensing

We use the angular cross-correlation between a luminous red galaxy (LRG) sample from the Dark Energy Spectroscopic Instrument (DESI) Legacy Survey data release DR9 and the Planck cosmic microwave background (CMB) lensing maps to constrain the local primordial non-Gaussianity parameter, f NL , using the scale-dependent galaxy bias effect. The galaxy sample covers approximately 40% of the sky, contains galaxies up to redshift z ∼ 1.4, and is calibrated with the LRG spectra that have been observed for DESI Year 1 (Y1). We apply a nonlinear imaging systematics treatment based on neural networks to remove observational effects that could potentially bias the f NL measurement. Our measurement is performed without blinding, but the full analysis pipeline is tested with simulations including systematics. Using the two-point angular cross-correlation between LRG and CMB lensing only, we find f NL = 39 −38 +40 at the 68% confidence level, and our result is robust in terms of systematics and cosmological assumptions. If we combine this information with the autocorrelation of LRG, applying a scale cut to limit the impact of systematics, we find f NL = 24 −21 +20 at the 68% confidence level. Our results motivate the use of CMB lensing cross-correlations to measure f NL with future datasets, given its stability in terms of observational systematics compared to the angular autocorrelation. Furthermore, performing accurate systematics mitigation is crucially important in order to achieve competitive constraints on f NL from CMB lensing cross-correlation in combination with the tracers’ autocorrelation.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Beyond the two-point correlation: Constraining primordial non-Gaussianity with density-perturbation moments

Constraining primordial non-Gaussianity (PNG) on the large-scale cosmic structure (LSS) is an important step in understanding properties of the early Universe, specifically in distinguishing between different inflationary models. Measuring PNG relies on evaluating the scale-dependent correlations in the density field. New summary statistics beyond the two- and three-point correlation functions in configuration space and their Fourier-space counterparts, the power- and bispectrum may provide increased sensitivity. We introduce a new method for extracting the PNG signal imprinted on the LSS by using the first three Gaussian moments of the normalized correlation in density perturbations, evaluated on varying distance scales. We aim to assess this method’s sensitivity to local PNG, parameterized by f NL . We performed spherical convolutions on a range of scales on dark-matter-halo simulations to measure the scale-dependent correlations in the density field. From these, we computed the first three moments and compared them to a model expectation vector, parameterized to the second power in f NL . Our method provides about 21% improvement in sensitivity to f NL with respect to using the two-point correlation function alone. Notably, we find that the second moment alone carries nearly as much constraining power as the mean, highlighting the potential of higher order statistics. Given its simplicity and efficiency, this framework is well suited for application to current and upcoming large-scale surveys such as the Dark Energy Spectroscopic Instrument (DESI).

early universe↗
DOE OSTI2025

Nonenzymatic RNA copying with a potentially primordial genetic alphabet

Nonenzymatic RNA copying is thought to have been responsible for the replication of genetic information during the origin of life. However, chemical copying with the canonical nucleotides (A, U, G, and C) strongly favors the incorporation of G and C and disfavors the incorporation of A and especially U because of the stronger G:C vs. A:U base pair and the weaker stacking interactions of U. Recent advances in prebiotic chemistry suggest that the 2-thiopyrimidines were precursors to the canonical pyrimidines, raising the possibility that they may have played an important early role in RNA copying chemistry. Furthermore, 2-thiouridine (s 2 U) and inosine (I) form by deamination of 2-thiocytidine (s 2 C) and A, respectively. We used thermodynamic and crystallographic analyses to compare the I:s 2 C and A:s 2 U base pairs. We find that the I:s 2 C base pair is isomorphic and isoenergetic with the A:s 2 U base pair. The I:s 2 C base pair is weaker than a canonical G:C base pair, while the A:s 2 U base pair is stronger than the canonical A:U base pair, so that a genetic alphabet consisting of s 2 U, s 2 C, I, and A generates RNA duplexes with uniform base pairing energies. Consistent with these results, kinetic analysis of nonenzymatic template-directed primer extension reactions reveals that s 2 C and s 2 U substrates bind similarly to I and A in the template, and vice versa. Our work supports the plausibility of a potentially primordial genetic alphabet consisting of s 2 U, s 2 C, I, and A and offers a potential solution to the long-standing problem of biased nucleotide incorporation during nonenzymatic template copying.

Science & Technology - Other Topics↗
DOE OSTI2022

Angular correlations of causally-coherent primordial quantum perturbations

In this work, we consider the hypothesis that nonlocal, omnidirectional, causally-coherent quantum entanglement of inflationary horizons may account for some well-known measured anomalies of cosmic microwave background (CMB) anisotropy on large angular scales. It is shown that causal coherence can lead to less cosmic variance in the large-angle power spectrum C ℓ of primordial curvature perturbations on spherical horizons than predicted by the standard model of locality in effective field theory, and to new symmetries of the angular correlation function C (Θ). Causal considerations are used to construct an approximate analytic model for C (Θ) on angular scales larger than a few degrees. Allowing for uncertainties from the unmeasured intrinsic dipole and from Galactic foreground subtraction, causally-coherent constraints are shown to be consistent with measured CMB correlations on large angular scales. Reduced cosmic variance will enable powerful tests of the hypothesis with better foreground subtraction and higher fidelity measurements on large angular scales.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Spiky CMB distortions from primordial bubbles

Primordial bubbles that possibly nucleate through quantum tunneling during inflation in a multidimensional potential might have left some relic detectable at the present time. These bubbles turn into black holes during the radiation era, which may account for the LIGO black holes, supermassive black holes, and may play an important role in dark matter. Typically, these black holes are surrounded by an energy deficit in the form of a spherical sound wave packet propagating outwards. In this work we study how this perturbation of the cosmic plasma dissipates before the time of recombination, leading to spectral distortions in CMB. Finally, we find that there may exist some rare regions on the last scattering surface containing huge black holes, which have produced potentially detectable point-like signals of µ-type distortions.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Constraints on MeV dark matter and primordial black holes: Inverse Compton signals at the SKA

Here we investigate the possibilities for probing MeV dark matter (DM) particles and primordial black holes (PBHs) (for masses ~ 10 15 –10 17 g) at the upcoming radio telescope SKA, using photon signals from the Inverse Compton (IC) effect within a galactic halo. Pair-annihilation or decay of MeV DM particles (into e + e - pairs) or Hawking radiation from a population of PBHs generates mildly relativistic e ± which can lead to radio signals through the IC scattering on low energy cosmic microwave background (CMB) photons. We study the ability of SKA to detect such signals coming from nearby ultra-faint dwarf galaxies Segue I and Ursa Major II as well as the globular cluster ω-cen and the Coma cluster. We find that with ~ 100 hours of observation, the SKA improves the Planck constraints on the DM annihilation/decay rate and the PBH abundance for masses in the range ~ 1 to few tens of MeV and above 10 15 to 10 17 g, respectively. Importantly, the SKA limits are independent of the assumed magnetic fields within the galaxies. Previously allowed regions of diffusion parameters of MeV electrons inside a dwarf galaxy that give rise to observable signals at the SKA are also excluded. For objects like dwarf galaxies, predicted SKA constraints depend on both the DM and diffusion parameters. Independent observations in different frequency bands, e.g., radio and γ-ray frequencies, may break this degeneracy and thus enable one to constrain the combined parameter space of DM and diffusion. However, the constraints are independent of diffusion parameters for galaxy clusters such as Coma.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

A possible mass distribution of primordial black holes implied by LIGO-Virgo

The LIGO-Virgo Collaboration has so far detected around 90 black holes, some of which have masses larger than what were expected from the collapse of stars. The mass distribution of LIGO-Virgo black holes appears to have a peak at ~ 30 M ⊙ and two tails on the ends. By assuming that they all have a primordial origin, we analyze the GWTC-1 (O1&O2) and GWTC-2 (O3a) datasets by performing maximum likelihood estimation on a broken power law mass function f ( m ), with the result f ∝ m 1.2 for m < 35 M ⊙ and f ∝ m -4 for m > 35 M ⊙ . This appears to behave better than the popular log-normal mass function. Surprisingly, such a simple and unique distribution can be realized in our previously proposed mechanism of PBH formation, where the black holes are formed by vacuum bubbles that nucleate during inflation via quantum tunneling. Moreover, this mass distribution can also provide an explanation to supermassive black holes formed at high redshifts.

Astronomy & Astrophysics↗
DOE OSTI2023

Updated constraints on primordial black hole evaporation

The Hawking evaporation process, leading to the production of detectable particle species, constrains the abundance of light black holes, presumably of primordial origin. Here, we reconsider and correct constraints from soft gamma-ray observations, including of the gamma-ray line, at 511 keV, produced by electron-positron pair-annihilation, where positrons originate from black hole evaporation. First, we point out that the INTEGRAL detection of the Large Magellanic Cloud provides one of the strongest bounds attainable with present observations; and that future MeV gamma-ray telescopes, such as GECCO, will greatly enhance such constraints. Second, we discuss issues with previous limits from the isotropic flux at 511 keV and we provide updated, robust constraints from recent measurements of the diffuse Galactic soft gamma-ray emission and from the isotropic soft gamma-ray background.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Learning to concentrate: multi-tracer forecasts on local primordial non-Gaussianity with machine-learned bias

Local primordial non-Gaussianity (LPNG) is predicted by many non-minimal models of inflation, and creates a scale-dependent contribution to the power spectrum of large-scale structure (LSS) tracers, whose amplitude is characterized by b Φ . Knowledge of b Φ for the observed tracer population is therefore crucial for learning about inflation from LSS. Recently, it has been shown that the relationship between linear bias b 1 and b Φ for simulated halos exhibits significant secondary dependence on halo concentration. We leverage this fact to forecast multi-tracer constraints on ${f}^{loc}_{NL}$. We train a machine learning model on observable properties of simulated IllustrisTNG galaxies to predict b Φ for samples constructed to approximate DESI emission line galaxies (ELGs) and luminous red galaxies (LRGs). We find σ(${f}^{loc}_{NL}$) = 2.3, and σ(${f}^{loc}_{NL}$) = 3.7, respectively. These forecasted errors are roughly factors of 3, and 35% improvements over the single-tracer case for each sample, respectively. When considering both ELGs and LRGs in their overlap region, we forecast σ(${f}^{loc}_{NL}$) = 1.5 is attainable with our learned model, more than a factor of 3 improvement over the single-tracer case, while the ideal split by b Φ could reach σ(${f}^{loc}_{NL}$) < 1. In conclusion, we also perform multi-tracer forecasts for upcoming spectroscopic surveys targeting LPNG (MegaMapper, SPHEREx) and show that splitting tracer samples by b Φ can lead to an order-of-magnitude reduction in projected σ(${f}^{loc}_{NL}$) for these surveys.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2024

Feedback in the dark: a critical examination of CMB bounds on primordial black holes

Abstract If present in the early universe, primordial black holes (PBHs) would have accreted matter and emitted high-energy photons, altering the statistical properties of the Cosmic Microwave Background (CMB). This mechanism has been used to constrain the fraction of dark matter that is in the form of PBHs to be much smaller than unity for PBH masses well above one solar mass. Moreover, the presence of dense dark matter mini-halos around the PBHs has been used to set even more stringent constraints, as these would boost the accretion rates.In this work, we critically revisit CMB constraints on PBHs taking into account the role of the local ionization of the gas around them. We discuss how the local increase in temperature around PBHs can prevent the dark matter mini-halos from strongly enhancing the accretion process, in some cases significantly weakening previously derived CMB constraints. We explore in detail the key ingredients of the CMB bound and derive a conservative limit on the cosmological abundance of massive PBHs.

Astronomy & Astrophysics↗
DOE OSTI2024

Primordial black hole sterile neutrinogenesis: sterile neutrino dark matter production independent of couplings

Abstract Sterile neutrinos (ν s s) are well-motivated and actively searched for hypothetical neutral particles that would mix with the Standard Model active neutrinos. They are considered prime warm dark matter (DM) candidates, typically when their mass is in the keV range, although they can also be hot or cold DM components. We discuss in detail the characteristics and phenomenology ofν s s that minimally couple only to active neutrinos and are produced in the evaporation of early Universe primordial black holes (PBHs), a process we called “PBH sterile neutrinogenesis”. Contrary to the previously studiedν s production mechanisms, this novel mechanism does not depend on the active-sterile mixing. The resultingν s s have a distinctive spectrum and are produced with larger energies than in typical scenarios. This characteristic enablesν s s to be WDM in the unusual 0.3 MeV to 0.3 TeV mass range, if PBHs do not matter-dominate the Universe before evaporating. When PBHs matter-dominate before evaporating, the possible coincidence of induced gravitational waves associated with PBH evaporation and astrophysical X-ray observations fromν s decays constitutes a distinct signature of our scenario.

Astronomy & Astrophysics↗
DOE OSTI2025

Warm Hawking relics from primordial black hole domination

We study the cosmological impact of warm, dark-sector relic particles produced as Hawkingradiation in a primordial-black-hole-dominated universe before big bang nucleosynthesis. If thesedark-sector particles are stable, they would survive to the present day as Hawking relicsand modify the growth of cosmological structure. We show that such relics are producedwith much larger momenta, but in smaller quantities than the familiar thermal relics considered instandard cosmology. Consequently, Hawking relics with keV–MeV masses affect the growth oflarge-scale structure in a similar way to eV-scale thermal relics like massive neutrinos. Wemodel their production and evolution, and show that their momentum distributions are broader thancomparable relics with thermal distributions. Warm Hawking relics affect the growth ofcosmological perturbations and we constrain their abundance to be less than 2% of the darkmatter over a broad range of their viable parameter space. Finally, we examine how futuremeasurements of the matter power spectrum can distinguish Hawking relics from thermal particles.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2026

The Simons Observatory: forecasted constraints on primordial gravitational waves with the expanded array of Small Aperture Telescopes

We present updated forecasts for the scientific performance of the degree-scale (0.5 deg FWHM at 93 GHz), deep-field survey to be conducted by the Simons Observatory (SO). By 2027, the SO Small Aperture Telescope (SAT) complement will be doubled from three to six telescopes, including a doubling of the detector count in the 93 GHz and 145 GHz channels to 48,160 detectors. Combined with a planned extension of the survey duration to 2035, this expansion will significantly enhance SO's search for a B-mode signal in the polarisation of the cosmic microwave background, a potential signature of gravitational waves produced in the very early Universe. Assuming a 1/f noise model with knee multipole ℓ knee = 50 and a moderately complex model for Galactic foregrounds, we forecast a 1σ (or 68% confidence level) constraint on the tensor-to-scalar ratio r of σ r = 1.2 × 10 -3 , assuming no primordial B-modes are present. This forecast assumes that 70% of the B-mode lensing signal can ultimately be removed using high resolution observations from the SO Large Aperture Telescope (LAT) and overlapping large-scale structure surveys. For more optimistic assumptions regarding foregrounds and noise, and assuming the same level of delensing, this forecast constraint improves to σ r = 7 × 10 -4 . These forecasts represent a major improvement in SO's constraining power, being a factor of around 2.5 times better than what could be achieved with the originally planned campaign, which assumed the existing three SATs would conduct a five-year survey.

CMBR experiments↗
DOE OSTI2026

Constraining primordial non-Gaussianity from DESI DR1 quasars and Planck PR4 CMB lensing

We present the first measurement of local-type primordial non-Gaussianity from the cross-correlation between 1.2 million spectroscopically confirmed quasars from the first data release (DR1) of the Dark Energy Spectroscopic Instrument (DESI) and the Planck PR4 CMB lensing reconstructions. The analysis is performed in three tomographic redshift bins covering 0.8 < z < 3.5, covering a sky fraction of ∼20%. We adopt a catalog-based pseudo-C ℓ estimator and apply linear imaging weights validated on noiseless mocks. Compared to previous analyses using photometric quasar samples, our results benefit from the high purity of the DESI spectroscopic sample, the reduced noise of PR4 lensing, and the absence of excess large-scale power in the spectroscopic quasar auto-correlation. Fitting simultaneously for the non-Gaussianity parameter f NL and the linear bias amplitude in each redshift bin, we obtain f NL = 2 +28 -34 for a response parameter p = 1.6, and f NL = 6 +20 -24 for p = 1.0. These results improve the constraints on f NL by ∼35% compared to the previous analysis based on the Legacy Imaging Survey DR9. Additionally, we derive an optimal weighting scheme to maximize the constraining power. In this case, and assuming p = 1.6, we obtain f NL = 19 +25 -31 . Our results demonstrate the statistical power of DESI quasars for probing inflationary physics, and highlight the promise of future DESI data releases.

cosmological parameters from CMBR↗
DOE OSTI2026

Assembly bias and local Primordial non-Gaussianity from DESI DR1 quasars

The analysis of the large-scale clustering of quasars (QSO) observed by the Dark Energy Spectroscopic Instrument (DESI) represents a promising avenue for constraining local Primordial non-Gaussianity (PNG), parameterized by f NL . The signal to be constrained is the scale-dependent bias induced in the 2-point clustering of the considered tracer sample. The resulting constraints on f NL , however, are fully degenerate with the local PNG bias parameter b ϕ , dependent on the assembly bias parameter p. Using IllustrisTNG hydrodynamical simulations, we select a QSO sample reflecting the selection criteria and properties of DESI QSOs, and provide a robust prior for p, and thus for b ϕ , building on the findings of Fondi et al. 2024. We find a distribution with mean p̅ ≃ 1.4 with weak redshift dependence, stable to selection noise and consistent with the expected recent merger history typical of quasar-hosting halos. By comparing with the CAMELS simulations we demonstrate that this prior is robust to astrophysical assumptions and cosmic variance. Finally, applying this prior to the DESI DR1 dataset, we derive updated constraints on local PNG, obtaining f NL = -3.3±9.2.

cosmological parameters from LSS↗
DOE OSTI2021

Primordial non-Gaussianity from the completed SDSS-IV extended Baryon Oscillation Spectroscopic Survey – I: Catalogue preparation and systematic mitigation

ABSTRACT We investigate the large-scale clustering of the final spectroscopic sample of quasars from the recently completed extended Baryon Oscillation Spectroscopic Survey (eBOSS). The sample contains 343 708 objects in the redshift range 0.8 < z < 2.2 and 72 667 objects with redshifts 2.2 < z < 3.5, covering an effective area of $4699\, {\rm deg}^{2}$. We develop a neural network-based approach to mitigate spurious fluctuations in the density field caused by spatial variations in the quality of the imaging data used to select targets for follow-up spectroscopy. Simulations are used with the same angular and radial distributions as the real data to estimate covariance matrices, perform error analyses, and assess residual systematic uncertainties. We measure the mean density contrast and cross-correlations of the eBOSS quasars against maps of potential sources of imaging systematics to address algorithm effectiveness, finding that the neural network-based approach outperforms standard linear regression. Stellar density is one of the most important sources of spurious fluctuations, and a new template constructed using data from the Gaia spacecraft provides the best match to the observed quasar clustering. The end-product from this work is a new value-added quasar catalogue with the improved weights to correct for non-linear imaging systematic effects, which will be made public. Our quasar catalogue is used to measure the local-type primordial non-Gaussianity in a companion paper.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Primordial non-Gaussianity from the completed SDSS-IV extended Baryon Oscillation Spectroscopic Survey II: measurements in Fourier space with optimal weights

ABSTRACT We present measurements of the local primordial non-Gaussianity parameter $f_{\mathrm{NL}}^\mathrm{local} $from the clustering of 343 708 quasars with redshifts 0.8 < z < 2.2 distributed over 4808 deg2 from the final data release (DR16) of the extended Baryon Acoustic Oscillation Spectroscopic Survey (eBOSS), the largest volume spectroscopic survey up to date. Our analysis is performed in Fourier space, using the power spectrum monopole at very large scales to constrain the scale-dependent halo bias. We demonstrate the robustness of our analysis pipeline with EZ-mock catalogues that simulate the eBOSS DR16 target selection. We carefully assess the impact of systematics on our measurement, exploiting a novel neural network scheme for cleaning the DR16 sample as well as test multiple contamination removal methods. We estimate the bias due to the overcorrection of the systematic removal to be sub-dominant compared to the statistical uncertainty. We find fNL = −12 ± 21 (68 per cent confidence) for the main clustering sample including quasars with redshifts between 0.8 and 2.2, after applying redshift weighting techniques, designed for non-Gaussianity measurement from large scales structure, to optimize our analysis, which improve our results by 37 per cent.

79 ASTRONOMY AND ASTROPHYSICS↗