MVTS-Data Toolkit: A Python package for preprocessing multivariate time series data
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Azim Ahmadzadeh↗
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Storage, retrieval, and analysis of ST data
Space Telescope can generate multidimensional image data, very similar in nature to data produced with microdensitometers. An overview is presented of the ST science ground system between carrying out the observations and the interactive analysis of preprocessed data. The ground system elements used in data archival and retrieval are described and operational procedures are discussed. Emphasis is given to aspects of the ground system that are relevant to the science user and to general principles of system software development in a production environment. While the system being developed uses relatively conservative concepts for the launch baseline, concepts were developed to enhance the ground system. This includes networking, remote access, and the utilization of alternate data storage technologies.
Albrecht, R.↗
Automated Recognition of 3D Features in GPIR Images
A method of automated recognition of three-dimensional (3D) features in images generated by ground-penetrating imaging radar (GPIR) is undergoing development. GPIR 3D images can be analyzed to detect and identify such subsurface features as pipes and other utility conduits. Until now, much of the analysis of GPIR images has been performed manually by expert operators who must visually identify and track each feature. The present method is intended to satisfy a need for more efficient and accurate analysis by means of algorithms that can automatically identify and track subsurface features, with minimal supervision by human operators. In this method, data from multiple sources (for example, data on different features extracted by different algorithms) are fused together for identifying subsurface objects. The algorithms of this method can be classified in several different ways. In one classification, the algorithms fall into three classes: (1) image-processing algorithms, (2) feature- extraction algorithms, and (3) a multiaxis data-fusion/pattern-recognition algorithm that includes a combination of machine-learning, pattern-recognition, and object-linking algorithms. The image-processing class includes preprocessing algorithms for reducing noise and enhancing target features for pattern recognition. The feature-extraction algorithms operate on preprocessed data to extract such specific features in images as two-dimensional (2D) slices of a pipe. Then the multiaxis data-fusion/ pattern-recognition algorithm identifies, classifies, and reconstructs 3D objects from the extracted features. In this process, multiple 2D features extracted by use of different algorithms and representing views along different directions are used to identify and reconstruct 3D objects. In object linking, which is an essential part of this process, features identified in successive 2D slices and located within a threshold radius of identical features in adjacent slices are linked in a directed-graph data structure. Relative to past approaches, this multiaxis approach offers the advantages of more reliable detections, better discrimination of objects, and provision of redundant information, which can be helpful in filling gaps in feature recognition by one of the component algorithms. The image-processing class also includes postprocessing algorithms that enhance identified features to prepare them for further scrutiny by human analysts (see figure). Enhancement of images as a postprocessing step is a significant departure from traditional practice, in which enhancement of images is a preprocessing step.
Park, Han↗
In-depth analysis on parallel processing patterns for high-performance Dataframes
The Data Science domain has expanded monumentally in both research and industry communities during the past decade, predominantly owing to the Big Data revolution. Artificial Intelligence (AI) and Machine Learning (ML) are bringing more complexities to data engineering applications, which are now integrated into data processing pipelines to process terabytes of data. Typically, a significant amount of time is spent on data preprocessing in these pipelines, and hence improving its efficiency directly impacts the overall pipeline performance. The community has recently embraced the concept of Dataframes as the de-facto data structure for data representation and manipulation. However, the most widely used serial Dataframes today (R, pandas) experience performance limitations while working on even moderately large data sets. We believe that there is plenty of room for improvement by taking a look at this problem from a high-performance computing point of view. In a prior publication, we presented a set of parallel processing patterns for distributed dataframe operators and the reference runtime implementation, Cylon. In this paper, we are expanding on the initial concept by introducing a cost model for evaluating the said patterns. Furthermore, we evaluate the performance of Cylon on the ORNL Summit supercomputer.
97 MATHEMATICS AND COMPUTING↗
The Role of GRAIL Orbit Determination in Preprocessing of Gravity Science Measurements
The Gravity Recovery And Interior Laboratory (GRAIL) mission has constructed a lunar gravity field with unprecedented uniform accuracy on the farside and nearside of the Moon. GRAIL lunar gravity field determination begins with preprocessing of the gravity science measurements by applying corrections for time tag error, general relativity, measurement noise and biases. Gravity field determination requires the generation of spacecraft ephemerides of an accuracy not attainable with the pre-GRAIL lunar gravity fields. Therefore, a bootstrapping strategy was developed, iterating between science data preprocessing and lunar gravity field estimation in order to construct sufficiently accurate orbit ephemerides.This paper describes the GRAIL measurements, their dependence on the spacecraft ephemerides and the role of orbit determination in the bootstrapping strategy. Simulation results will be presented that validate the bootstrapping strategy followed by bootstrapping results for flight data, which have led to the latest GRAIL lunar gravity fields.
science preprocessing↗
Short‐Term Hourly Weather Forecasting Using PredRNN With Image Preprocessing
Global weather forecast models are vital tools with numerous applications, including public safety, agriculture, and transportation. Recent advancements in artificial intelligence (AI) and deep learning (DL) have shown the potential to enhance weather forecasting accuracy and speed. In this study, we developed a short-term hourly weather forecast framework with a wavelet transform function for data preprocessing and a spatiotemporal DL model, PredRNN, for predicting five surface atmospheric variables, including wind speed and direction, mean sea level pressure (MSLP), temperature, and precipitation. The framework demonstrated promising results. It produces global forecasts at 0.25° (∼25 km) with a 1-day lead time RMSE of 1.8 m/s for wind components, 180 Pa for MSLP, and 1.8 K for temperature. Although our model does not surpass state-of-the-art AI weather forecast models across all metrics, it outperforms these models in precipitation forecasting and wind prediction at short lead times and achieves comparable accuracy for MSLP. Its native hourly forecasting capability, together with training on widely accessible GPU hardware, contributes meaningfully to the advancement of accessible DL weather forecasting methods. Our work highlights the importance of integrating temporal components and data transformation techniques to improve the predictability and accuracy of weather forecasts.
Tran, Hoang [Pacific Northwest National Laboratory↗
Future interactive data systems
The information and control requirements of the investigator-users of future free-flying, platform-based, or Space Station-based scientific experiments are assessed, and the implications of these requirements for the design of the information systems are discussed. The principal requirements include near-real-time interaction with the payload, distributed or remote payload command and control, rapid access to quick-look data, flexibility of payload command sequences, on-demand uplink-downlink availability, system transparency, and modular design to facilitate replacement of system components. Current developments in systems architecture such as increased use of onboard microprocessors to select and preprocess data and transmit autonomous streams directly to the user, standardization of interfaces, and the NASA Tracking and Data Relay Satellite System are characterized, and block diagrams of present and future systems are provided.
Bracken, P. A.↗
Deep learning multiphysics network for imaging CO 2 saturation and estimating uncertainty in geological carbon storage
Multiphysics inversion exploits different types of geophysical data that often complement each other and aims to improve overall imaging resolution and reduce uncertainties in geophysical interpretation. Despite the advantages, traditional multiphysics inversion is challenging because it requires a large amount of computational time and intensive human interactions for preprocessing data and finding trade-off parameters. These issues make it nearly impossible for traditional multiphysics inversion to be applied as a real-time monitoring tool for geological carbon storage. In this paper, we present a deep learning (DL) multiphysics network for imaging CO 2 saturation in real time. The multiphysics network consists of three encoders for analysing seismic, electromagnetic and gravity data and shares one decoder for combining imaging capabilities of the different geophysical data for better predicting CO 2 saturation. The network is trained on pairs of CO 2 label models and multiphysics data so that it can directly image CO 2 saturation. Here we use the bootstrap aggregating method to enhance the imaging accuracy and estimate uncertainties associated with CO 2 saturation images. Using realistic CO 2 label models and multiphysics data derived from the Kimberlina CO 2 storage model, we evaluate the performance of the deep learning multiphysics network and compare its imaging results to those from the deep learning single-physics networks. Our modelling experiments show that the deep learning multiphysics network for seismic, electromagnetic, and gravity data not only improves the imaging accuracy but also reduces uncertainties associated with CO 2 saturation images. Our results also suggest that the deep learning multiphysics network for the non-seismic data (i.e., electromagnetic and gravity) can be used as an effective low-cost monitoring tool in between regular seismic monitoring.
58 GEOSCIENCES↗
Moisture Effect on Chitin Decomposition Biogeochemistry
This dataset contains data files for multiple measurements of sample biogeochemistry and function collected for the Soils SFA Chitin Decomposition project in task 2.2. Samples were generated from soil incubated under different moisture levels, with and without chitin. Each sheet in the file refers to the preprocessed data collected. Sheet 1 "Respiration" measures CO2 production daily for the course of the incubation. Sheet 2 "Biomass" contains the microbial biomass and salt extractable measurements for carbon and nitrogen. Sheet 3 "Chitin" is for HPLC measured chitin from each sample. Sheet 4 "Extracellular Enzyme Assays" records the level of activity for several enzyme assays. Sheet 5 "Enzyme Kinetics" measures degradation of substrate over time for all samples.
Reichart, Nicholas J [Pacific Northwest National L↗
Dataset for 'Stream Temperature Predictions for River Basin Management in the Pacific Northwest and Mid-Atlantic Regions Using Machine Learning', Water 2022
This data package presents forcing data, model code, and model output for classical machine learning models that predict monthly stream water temperature as presented in the manuscript ‘Stream Temperature Predictions for River Basin Management in the Pacific Northwest and Mid-Atlantic Regions Using Machine Learning’, Water (Weierbach et al., 2022). Specifically, for input forcing datasets we include two files each generated using the BASIN-3D data integration tool (Varadharajan et al., 2022) for stations in the Pacific Northwest and Mid Atlantic Hydrologic regions. Model code (written in python with the use of jupyter notebooks) includes codes for data preprocessing, training Multiple Linear Regression, Support Vector Regression, and Extreme Gradient Boosted Tree models, and additional notebooks for analysis of model output. We include specific model output files which represent modeling configurations presented in the manuscript also presented in an hdf5 format. Together, these data make up the workflow for predictions across three scenarios (single station, regional, and predictions in unmonitored basins) presented in the manuscript and allow for reproducibility of modeling procedures.
54 ENVIRONMENTAL SCIENCES↗
Machine processing of remotely sensed data; Proceedings of the Fifth Annual Symposium, Purdue University, West Lafayette, Ind., June 27-29, 1979
Papers are presented on techniques and applications for the machine processing of remotely sensed data. Specific topics include the Landsat-D mission and thematic mapper, data preprocessing to account for atmospheric and solar illumination effects, sampling in crop area estimation, the LACIE program, the assessment of revegetation on surface mine land using color infrared aerial photography, the identification of surface-disturbed features through a nonparametric analysis of Landsat MSS data, the extraction of soil data in vegetated areas, and the transfer of remote sensing computer technology to developing nations. Attention is also given to the classification of multispectral remote sensing data using context, the use of guided clustering techniques for Landsat data analysis in forest land cover mapping, crop classification using an interactive color display, and future trends in image processing software and hardware.
Tendam, I. M.↗
A review and analysis of neural networks for classification of remotely sensed multispectral imagery
A literature survey and analysis of the use of neural networks for the classification of remotely sensed multispectral imagery is presented. As part of a brief mathematical review, the backpropagation algorithm, which is the most common method of training multi-layer networks, is discussed with an emphasis on its application to pattern recognition. The analysis is divided into five aspects of neural network classification: (1) input data preprocessing, structure, and encoding; (2) output encoding and extraction of classes; (3) network architecture, (4) training algorithms; and (5) comparisons to conventional classifiers. The advantages of the neural network method over traditional classifiers are its non-parametric nature, arbitrary decision boundary capabilities, easy adaptation to different types of data and input structures, fuzzy output values that can enhance classification, and good generalization for use with multiple images. The disadvantages of the method are slow training time, inconsistent results due to random initial weights, and the requirement of obscure initialization values (e.g., learning rate and hidden layer size). Possible techniques for ameliorating these problems are discussed. It is concluded that, although the neural network method has several unique capabilities, it will become a useful tool in remote sensing only if it is made faster, more predictable, and easier to use.
Paola, Justin D.↗
Exploratory analysis and performance prediction of big data transfer in High-performance Networks
Big data transfer in large-scale scientific and business applications is increasingly carried out over connections with guaranteed bandwidth provisioned in High-performance Networks (HPNs) via advance bandwidth reservation. Provisioning agents need to carefully schedule data transfer requests, compute network paths, and allocate appropriate bandwidths. Such reserved bandwidths, if not fully utilized, could be simply wasted due to the exclusive access during the approved time window, and cause extra overhead and complexity for resource management. This calls for accurate performance prediction to reserve bandwidths that match actual needs and avoid over-provisioning. We employ machine learning algorithms to predict big data transfer performance based on extensive performance measurements collected in the past several years from data transfer tests using different protocols and toolkits between various end sites on several real-life physical or emulated testbeds. We first analyze the performance patterns in response to a comprehensive list of parameters in end-host systems, network connections, and data transfer applications, which motivate the use of machine learning and also help us identify the effects of latent factors. We then propose threshold- and clustering-based methods to eliminate negative effects of latent factors in data preprocessing and build a robust performance predictor based on customized domain-oriented loss functions. The performance of the proposed methods is verified by extensive experiments using SVR and RFR as well as theoretical analysis of the general performance bound.
97 MATHEMATICS AND COMPUTING↗
Workflows Community Summit 2022: A Roadmap Revolution
Scientific workflows have become integral tools in broad scientific computing use cases. Science discovery is increasingly dependent on workflows to orchestrate large and complex scientific experiments that range from the execution of a cloud-based data preprocessing pipeline to multi-facility instrument-to-edge-to-HPC computational workflows. Given the changing landscape of scientific computing (often referred to as a computing continuum) and the evolving needs of emerging scientific applications, it is paramount that the development of novel scientific workflows and system functionalities seek to increase the efficiency, resilience, and pervasiveness of existing systems and applications. Specifically, the proliferation of machine learning/artificial intelligence (ML/AI) workflows, need for processing large-scale datasets produced by instruments at the edge, intensification of near real-time data processing, support for long-term experiment campaigns, and emergence of quantum computing as an adjunct to HPC, have significantly changed the functional and operational requirements of workflow systems. Workflow systems now need to, for example, support data streams from the edge-to-cloud-to-HPC, enable the management of many small-sized files, allow data reduction while ensuring high accuracy, orchestrate distributed services (workflows, instruments, data movement, provenance, publication, etc.) across computing and user facilities, among others. Further, to accelerate science, it is also necessary that these systems implement specifications/standards and APIs for seamless (horizontal and vertical) integration between systems and applications, as well as enable the publication of workflows and their associated products according to the FAIR principles.
97 MATHEMATICS AND COMPUTING↗
E-Nose Vapor Identification Based on Dempster-Shafer Fusion of Multiple Classifiers
Electronic nose (e-nose) vapor identification is an efficient approach to monitor air contaminants in space stations and shuttles in order to ensure the health and safety of astronauts. Data preprocessing (measurement denoising and feature extraction) and pattern classification are important components of an e-nose system. In this paper, a wavelet-based denoising method is applied to filter the noisy sensor measurements. Transient-state features are then extracted from the denoised sensor measurements, and are used to train multiple classifiers such as multi-layer perceptions (MLP), support vector machines (SVM), k nearest neighbor (KNN), and Parzen classifier. The Dempster-Shafer (DS) technique is used at the end to fuse the results of the multiple classifiers to get the final classification. Experimental analysis based on real vapor data shows that the wavelet denoising method can remove both random noise and outliers successfully, and the classification rate can be improved by using classifier fusion.
Li, Winston↗
Laser powder bed fusion parameter estimation with k-NN
Abstract Laser powder bed fusion (L-PBF) is a technique within additive manufacturing that uses a high power density laser to build parts from fused powdered metal alloy. This technology is well equipped to produce complex parts with otherwise impossible features, such as hidden voids or lattice structures. Alongside capability, reliability and quality are key characteristics considered when choosing a manufacturing method, and these are gaining attention as this method becomes more prevalent in industry. One main indicator of a stable L-PBF process is consistent melt pool geometry, and the properties of which are likely to determine the quality of the part produced. As computing power and sensing technologies become more advanced, this melt pool geometry could be studied in real time. This work addresses the challenge by leveraging a k-nearest neighbor (k-NN) model to identify key features within melt pool imagery and predict the energy density. The k-NN model was trained on data provided by the National Institute of Standards and Technology (NIST). Data preprocessing was performed on the images to extract features that were used in the k-NN model. This approach was used to accurately infer the energy density of unseen layers within the same part. The algorithm was subsequently tested with unique scan strategies and found to reasonably estimate the energy density of different parts. A fivefold cross validation found the algorithm to be consistently predicting the class of 91.4% of the in situ melt pool images.
Jung, Patrick (ORCID:0000000267890859)↗
Queue wait time prediction in high performance computing (HPC) systems
High Performance Computing (HPC) systems are critical enablers for groundbreaking scientific research across various domains. Efficient resource allocation, facilitated by job scheduling, is paramount for maximizing the utilization of HPC systems. However, the variability in wait times for queued jobs poses challenges for users, necessitating accurate job wait time estimation. This paper explores the influence of job characteristics, including job size (the number of nodes requested and walltime), the queue to which the job is submitted and other resource requirements, on job wait times in leadership-class HPC systems. Focusing on the Theta Cray XC40 and Polaris machines at Argonne National Laboratory, the study evaluates the performance of different supervised learning algorithms in predicting job wait times. It also evaluates the impact of data preprocessing, including outlier detection, Principal Component Analysis (PCA), and feature selection, on the performance of wait time prediction models. The findings reveal insights into the relationship between job characteristics and wait times, offering a foundation for optimizing resource allocation and enhancing user experience. The methodologies and tools developed in this study are adaptable to other leadership-class HPC systems, providing a valuable contribution to the broader HPC community aiming to improve job scheduling efficiency and user satisfaction.
Okafor, Nwamaka↗
Portable interactive visualization of large-scale simulations in geotechnical engineering using Unity3D
Development in large-scale geotechnical engineering simulation places tremendous demand for efficient visualization of such simulation data. This study presents a lightweight software tool, i.e. Geotechnical Interactive Visualization (GIV), as a solution to this challenge, which achieves efficient interactive visualization of large-scale simulations data in geotechnical engineering. Visualization data flow and algorithms specifically optimized for common geotechnical engineering applications are implemented in GIV. GIV can visualize geotechnical structure models with time-varying attributes attached to mesh with fixed topology, and also models with time-varying mesh topologies but no attributes attached, the two most common visualization tasks in geotechnical engineering. Furthermore, challenges for large-scale simulation data visualization, including parallel simulation data redundancy, massive data size, dynamic user interaction, and portability are overcome via specifically designed algorithms for simulation data preprocessing and optimized visualization modules using the powerful 3D rendering and interactive game engine Unity3D. Comparison of GIV with several widely used visualization tools for the visualization of large-scale idealized datasets and realistic geotechnical simulations highlights the visualization efficiency, smooth interactivity, and lightweight features of GIV.
42 ENGINEERING↗