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At least 91 records · Page 5

MicroFisher: Fungal taxonomic classification for metatranscriptomic and metagenomic data using multiple short hypervariable markers

AbstractProfiling the taxonomic and functional composition of microbes using metagenomic (MG) and metatranscriptomic (MT) sequencing is advancing our understanding of microbial functions. However, the sensitivity and accuracy of microbial classification using genome– or core protein-based approaches, especially the classification of eukaryotic organisms, is limited by the availability of genomes and the resolution of sequence databases. To address this, we propose the MicroFisher, a novel approach that applies multiple hypervariable marker genes to profile fungal communities from MGs and MTs. This approach utilizes the hypervariable regions of ITS and large subunit (LSU) rRNA genes for fungal identification with high sensitivity and resolution. Simultaneously, we propose a computational pipeline (MicroFisher) to optimize and integrate the results from classifications using multiple hypervariable markers. To test the performance of our method, we applied MicroFisher to the synthetic community profiling and found high performance in fungal prediction and abundance estimation. In addition, we also used MGs from forest soil and MTs of root eukaryotic microbes to test our method and the results showed that MicroFisher provided more accurate profiling of environmental microbiomes compared to other classification tools. Overall, MicroFisher serves as a novel pipeline for classification of fungal communities from MGs and MTs.

Wang, Haihua

Search for New Physics in Jet Multiplicity Patterns of Multilepton Events at $\sqrt{s}$ = 13 TeV

A first search for beyond the standard model physics in jet multiplicity patterns of multilepton events is presented, using a data sample corresponding to an integrated luminosity of 138 fb −1 of 13 TeV proton-proton collisions recorded by the CMS detector at the LHC. The search uses observed jet multiplicity distributions in one-, two-, and four-lepton events to explore possible enhancements in jet production rate in three-lepton events with and without bottom quarks. The data are found to be consistent with the standard model expectation. The results are interpreted in terms of supersymmetric production of electroweak chargino-neutralino superpartners with cascade decays terminating in prompt hadronic 𝑅-parity violating interactions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS

Observation of the Charged-Particle Multiplicity Dependence of 𝜎 𝜓⁡(2⁢𝑆 )/𝜎 𝐽/𝜓 in 𝑝-Pb Collisions at 8.16 TeV

Bound states of charm and anticharm quarks, known as charmonia, have a rich spectroscopic structure that can be used to probe the dynamics of hadron production in high-energy hadron collisions. Here, the cross section ratio of excited (𝜓⁡(2⁢𝑆)) and ground state (𝐽/𝜓) vector mesons is measured as a function of the charged-particle multiplicity in proton-lead (𝑝⁢Pb) collisions at a center-of-mass (CM) energy per nucleon pair of 8.16 TeV. The data corresponding to an integrated luminosity of 175 nb −1 were collected using the CMS detector. The ratio is measured separately for prompt and nonprompt charmonia in the transverse momentum range 6.5 < 𝑝 T < 30 GeV and in four rapidity ranges spanning −2.865 < 𝑦 CM < 1.935. For the first time, a statistically significant multiplicity dependence of the prompt cross section ratio is observed in proton-nucleus collisions. There is no clear rapidity dependence in the ratio. The prompt measurements are compared with a theoretical model which includes interactions with nearby particles during the evolution of the system. These results provide additional constraints on hadronization models of heavy quarks in nuclear collisions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS

Quantum Algorithms for Representation-Theoretic Multiplicities

Kostka, Littlewood-Richardson, Plethysm, and Kronecker coefficients are the multiplicities of irreducible representations in the decomposition of representations of the symmetric group that play an important role in representation theory, geometric complexity, and algebraic combinatorics. We give quantum algorithms for computing these coefficients whenever the ratio of dimensions of the representations is polynomial. We show that there is an efficient classical algorithm for computing the Kostka numbers under this restriction and conjecture the existence of an analogous algorithm for the Littlewood-Richardson coefficients. We argue why such classical algorithm does not straightforwardly work for the Plethysm and Kronecker coefficients and conjecture that our quantum algorithms lead to superpolynomial speedups. The conjecture about Kronecker coefficients was disproved by Panova [Polynomial time classical versus quantum algorithms for representation theoretic multiplicities, arXiv:2502.20253] with a classical algorithm which, if optimal, points to a 𝒪⁡(𝑛 4+2⁢𝑘 ) vs $\tilde{Ω}$⁡(𝑛 4⁢𝑘 2 +1 ) polynomial gap in quantum vs classical computational complexity for an integer parameter 𝑘.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC

Measurement of flow coefficients in high-multiplicity 𝑝 + Au, 𝑑 + Au, and 3 He + Au collisions at $\sqrt{s_{NN}}$ = 200 GeV

Flow coefficients (𝑣 2 and 𝑣 3 ) are measured in high-multiplicity 𝑝 + Au, 𝑑 + Au, and 3 He + Au collisions at a center-of-mass energy of $\sqrt{s_{NN}}$ = 200 GeV using the STAR detector. The measurements utilize two-particle correlations with a pseudorapidity requirement of |𝜂| < 0.9 and a pair gap of |Δ⁢𝜂| > 1.0. The primary focus is on analysis methods, particularly the subtraction of nonflow contributions. Four established nonflow subtraction methods are applied to determine 𝑣 𝑛 , validated using the HIJING event generator. 𝑣 𝑛 values are compared across the three collision systems at similar multiplicities; this comparison cancels the final-state effects and isolates the impact of initial geometry. While 𝑣 2 values show differences among these collision systems, 𝑣 3 values are largely similar, consistent with expectations of subnucleon fluctuations in the initial geometry. The ordering of 𝑣 𝑛 differs quantitatively from previous measurements using two-particle correlations with a larger rapidity gap, which, according to model calculations, can be partially attributed to the effects of longitudinal flow decorrelations. As a result, the prospects for future measurements to improve our understanding of flow decorrelation and subnucleonic fluctuations are also discussed.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS

Unexpected Observation of Disorder and Multiple Phase-Transition Pathways in Shock-Compressed Zr

The response of materials under dynamic compression involves a complex interplay of various deformation mechanisms aimed at relieving shear stresses, yielding a remarkable diversity in material behavior. Here, in this Letter, we utilize femtosecond x-ray diffraction coupled with nanosecond laser compression to reveal an intricate competition between multiple shear-relieving mechanisms within an elemental metal. Our observations in shocked-compressed single-crystal Zr indicate a disorder-mediated shear relaxation at lower pressures. Above the phase-transition pressure, we observe the increasing contribution of structural phase transition in relieving shear stress. We detect not one but three concurrent pathways during the transition from the hcp to a hex-3 structure. These complex dynamics are partially corroborated through multimillion-atom molecular dynamics simulations employing a machine-learned interatomic potential. Our observation of multiple concurrent pathways and disorder during shock compression underscore the far greater intricacies in the dynamic response of metals than previously assumed.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND

First measurement of neutron capture multiplicity in neutrino-oxygen neutral-current quasielasticlike interactions using an accelerator neutrino beam

We report the first measurement of neutron capture multiplicity in neutrino-oxygen neutral-current quasielasticlike interactions at the gadolinium-loaded Super-Kamiokande detector using the T2K neutrino beam, which has a peak energy of about 0.6 GeV. A total of 30 neutral-current quasielasticlike event candidates were selected from T2K data corresponding to an exposure of 1.76 × 10 20 protons on target. The 𝛾 ray signals resulting from neutron captures were identified using a neural network. The flux-averaged mean neutron capture multiplicity was measured to be 1.37 ± 0.33 (stat.)$^{+0.17}_{−0.27}$ (syst.), which is compatible within 2.3 sigma than predictions obtained using our nominal simulation. We discuss potential sources of systematic uncertainty in the prediction and demonstrate that a significant portion of this discrepancy arises from the modeling of hadron-nucleus interactions in the detector medium.

particle interactions

Integration of Multiple Real-time Simulation Platforms with AIO for Scalability

This paper introduces a practical and scalable approach to extend interoperability of Controller Hardware in the Loop (CHIL) validations for large scale microgrids, networked microgrids, and power electronics-based feeders. The work focuses on integrating multiple real-time simulators using Analog Input/Output (AIO) interface techniques in heterogeneous CHIL environment. It explores interfacing methods, highlighting key challenges related to dynamic accuracy and maintaining bidirectional power balance. A comparative evaluation of the Ideal Transformer Method is presented, assessing its effectiveness in multi-CHIL integration scenarios. The feasibility of this setup is demonstrated through a real-time use case involving multiple Typhoon HIL and Opal-RT platforms, showcasing its applicability for distributed system studies.

Khalid, Mohammad [ORNL] (ORCID:0000000179208805)

Optimal Managed Fast-Charging Model for Electric Vehicle Fleets with High Utilization and Multiple Charge-Acceptance Curves

A predictive control/scheduling optimization model is proposed for managed charging of an electric vehicle (EV) fleet - under time-of-use energy and demand prices, high vehicle utilization frequency (short dwell times), multiple charge- acceptance curves (configurable charging rates), and flexible vehicle demand. This context is particularly relevant for flight schools (small electric aircraft) or other commercial facilities where an EV fleet performs multiple operating and fast-charging sessions on the same day. The proposed model performs both the operational and charging scheduling of the vehicles, which is not typically done for residential managed charging and significantly increases problem complexity. The problem is formulated as a MILP model and a case study of a small fast-charging station is presented. Results demonstrate a significant reduction in operating cost, mainly from peak shaving during high demand price periods, achieved by coordinating the operation of different vehicles, chargers and charging rates.

ADVANCED PROPULSION SYSTEMS,ENERGY PLANNING, POLIC

Distribution System State Estimation Using a Multiple Iteration Extended Kalman Filter Approach

To support the operation of modern distribution systems, operators require real-time visibility into system states. Due to a lack of measurements and unbalanced operation, the state estimation in distribution systems is challenging as compared to transmission systems. This paper proposes the utilization of a Multiple Iteration - Extended Kalman Filter based approach for the distribution system state estimation. This modified version of the baseline extended Kalman filter iterates over the update step multiple times thereby reducing the estimation error. The proposed algorithm along with the auxiliary algorithms such as bad data detection is integrated into a co-simulation environment. Case studies show that the proposed state estimation method can result in a lesser estimation error as compared to the baseline approach.

Bhatti, Bilal Ahmad

Generalizing multiple memories from a single drive: The hysteron latch

Far-from-equilibrium systems can form memories of previous deformations or driving. In systems from sheared glassy materials to buckling beams to crumpled sheets, this behavior is dominated by return-point memory, in which revisiting a past extremum of driving restores the system to a previous state. Cyclic driving with both positive and negative strains forms multiple nested memories, as in a single-dial combination lock, while asymmetric driving (only positive strain) cannot. We study this case in a general model of hysteresis that considers discrete elements called hysterons. We show how two hysterons with a frustrated interaction can violate return-point memory, realizing multiple memories of asymmetric driving. This reveals a general principle for designing systems that store sequences of cyclic driving, whether symmetric or asymmetric. In disordered systems, asymmetric driving is a sensitive tool for the direct measurement of frustration.

Science & Technology - Other Topics

Novosphingobium aromaticivorans LigR coordinates transcription of genes involved in metabolism of multiple types of aromatics

Aromatic compounds are a ubiquitous and diverse family of chemicals with functions as biomolecules, natural products, industrial chemicals, and pollutants. Novosphingobium aromaticivorans DSM 12444 uses multiple inducible pathways to catabolize H-, G-, and S-type aromatics that contain zero, one, or two methoxy groups, respectively. Here, we obtain a systems-level view of the transcriptional control of its aromatic metabolic pathways. Several in vitro analyses found that a N. aromaticivorans homolog of the Sphingobium lignivorans SYK-6 transcription factor LigR bound genomic DNA upstream of genes involved in metabolism of multiple aromatic types. We found that a ΔLigR mutant had growth defects on all three types of aromatics as sole carbon sources. Transcriptomic analysis revealed that LigR was required to increase expression of gene products that function in metabolism of all three aromatic types. We also found that, in media containing both glucose and an aromatic carbon source, the ΔLigR mutant directed intermediates through alternative aromatic metabolic pathways. Protein-DNA binding assays showed that N. aromaticivorans LigR binds immediately upstream of promoters of genes involved in aromatic metabolism. We found that N. aromaticivorans LigR coordinates the expression of enzymes that function in the catabolism of H-, G-, and S-type aromatics, and that there are differences in the role of LigR in N. aromaticivorans and S. lignivorans. A comparative genomic analysis predicted that LigR homologs and the aromatic-metabolizing genes that it directly regulates are often co-localized in the genomes of Sphingomonadales, but often not found in this arrangement in many other known aromatic metabolizing bacteria.

Aromatic Compound Degradation

Multiplicity and net-electric charge fluctuations in central Ar+Sc interactions at 13 A , 19 A , 30 A , 40 A , 75 A , and 150 A GeV/c beam momenta measured by NA61/SHINE at the CERN SPS

This paper presents results on multiplicity fluctuations of positively and negatively charged hadrons as well as net-electric charge fluctuations measured in central Ar+Sc interactions at beam momenta 13 A , 19 A , 30 A , 40 A , 75 A , and 150 A GeV/c. The fluctuation analysis is one of the tools to search for the predicted critical point of strongly interacting matter. Results are corrected for the experimental biases and quantified using cumulant ratios. In most instances, multiplicity and net-charge distributions appear narrower than the corresponding Poisson or Skellam distributions. Cumulant ratios are compared with the EPOS1.99 model predictions, which provide a qualitative description that aligns with observations for positively and negatively charged particles. The obtained results are also compared to earlier NA61/SHINE results from inelastic p+p interactions in the same analysis acceptance.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS

Geophysical Signatures of Crack Network Coalescence in Rocks at Multiple Length Scales

The main goal of the research project was to identify the geophysical signatures of fracture growth in natural rocks by utilizing novel geophysical techniques. The research objectives were to (a) investigate the potential for geophysical methods to determine when cracks initiate, the types and locations of propagated cracks, and the coalescence of networks of cracks in natural rocks at multiple scales, (b) determine how damage at the microscale evolved into damage at the macroscale and then link the microscopic and macroscopic observations, (c) quantify crack coalescence in rocks under realistic stress conditions using coupled mechanical-geophysical-optical visualization, and (d) identify the precursors in geophysical signals to crack coalescence. The following research thrusts were explored to achieve the research objectives: (1) uniaxial compression testing of rock specimens with and without a set of pre‐existing flaws and (2) triaxial compression testing of natural rock specimens. These thrusts allowed for exploring fracturing in rocks under realistic in situ environments and at multiple scales. This project provided educational opportunities for nine graduate and undergraduate students and resulted in 27 peer-reviewed publications. This first research thrust focused on investigating the micromechanics of fractures in rocks through uniaxial compression testing combined with advanced geophysical and imaging techniques, specifically acoustic emission (AE) monitoring, ultrasonic imaging, and 2-dimensional Digital Image Correlation (2D-DIC). By examining damage processes under time-independent and time-dependent loading conditions, insights into damage localization, crack initiation, and fracturing mechanisms were gained. It was observed that the AE signals and the strain-based measurements directly reflect the state of damage in the rock specimen and could be used to identify the cracking levels, such as the crack initiation (CI) and crack damage (CD), and the mode of deformation. A novel calibration apparatus was developed to enhance the accuracy of AE sensors, allowing for the estimation of key parameters such as magnitude, source dimension, stress drop, and radiated seismic energy associated with the fractures. The findings highlighted significant variations in the temporal evolution of AE source parameters during the primary, secondary, and tertiary stages of creep, identifying tensile cracking as the primary deformation mode. The second research thrust focused on enhancing the understanding of fracturing processes in natural rocks through triaxial compression testing, real-time AE monitoring, and ultrasonic monitoring. We investigated the impact of various factors such as fracture propagation regimes, injection parameters, rock types, and pre-existing conditions on the hydraulic fracture (HF) behavior using scaled true-triaxially loaded specimens of Barre granite and Lyons sandstone. Custom sensor housing facilitated concurrent active and passive monitoring to analyze hydro-mechanical responses and microseismicity associated with different HF scenarios. A coupled investigation of passive microseismicity and active signal attributes permitted a detailed comprehension of the various HF processes (aseismic deformation, fracture initiation and propagation, fluid permeation, and leak-off) and their dependence on the specific rock type. The findings of this research demonstrated the effectiveness of AE monitoring techniques in providing valuable insights into the impact of various factors on the behavior and dynamics of HF processes. The advancements in monitoring techniques, offering a more thorough and precise approach, represent a significant step towards optimizing HF practices and ensuring sustainable resource extraction.

58 GEOSCIENCES

Applying Mechanistic Co-Design Towards Room-Temperature Organic, Optical, and Multiple-Center Molecular Qubits

The next generation of qubits, the building blocks of quantum technologies, are designed using molecules. Molecular qubits have natural advantages over solid-state equivalents in biological and chemical sensing. Chemistry allows the properties of molecular qubits to be fine-tuned, such as the ability of multiple qubits to work together using qubit-qubit coupling. Molecules and structures containing multiple qubits, made from both inorganic and organic elements, are developed in this work to bring quantum technologies closer to room-temperature operation. The goal is achieved by understanding how the core of the qubit, known as spin, interacts with the vibrating parts of the molecule, other spins, and the surrounding environment. A combined approach involving theory, spectroscopy, and synthesis is used to achieve the design goal.

36 MATERIALS SCIENCE

High-Multiplicity Muon Airshower Analysis at NOvA Far Detector

We process and analyze muon airshower data from the NOvA far detector using various image processing algorithms, such as Fast Fourier Transformation, and Hough line transformation. From the processed event images, we calculate multiple parameters for our study. We are looking for physics features, including East-West Asymmetry, anisotropies in right ascension, and seasonal variation. Additionally, we have developed an algorithm to count the multiplicity of muons in the airshower events using the single muon data.

Lima, Aklima Khanam [Syracuse U.]

Multiple Hail Impact Testing

For resilient energy delivery PV modules and systems must withstand extreme weather events such as hailstorms, which are the leading cause of PV insurance claims. Currently, the industry testing is limited to one strike at a time, but in real hailstorms multiple hail strikes can occur within a fraction of a second. In this project we test if multiple simultaneous or near-simultaneous hail strikes cause more damage than with single hail strike testing.

14 SOLAR ENERGY

Quantum Multiple Eigenvalue Gaussian filtered Search: an efficient and versatile quantum phase estimation method

Quantum phase estimation is one of the most powerful quantum primitives. This work proposes a new approach for the problem of multiple eigenvalue estimation: Quantum Multiple Eigenvalue Gaussian filtered Search (QMEGS). QMEGS leverages the Hadamard test circuit structure and only requires simple classical postprocessing. QMEGS is the first algorithm to simultaneously satisfy the following two properties: (1) It can achieve the Heisenberg-limited scaling without relying on any spectral gap assumption. (2) With a positive energy gap and additional assumptions on the initial state, QMEGS can estimate all dominant eigenvalues to ϵ accuracy utilizing a significantly reduced circuit depth compared to the standard quantum phase estimation algorithm. In the most favorable scenario, the maximal runtime can be reduced to as low as log(1/ϵ). This implies that QMEGS serves as an efficient and versatile approach, achieving the best-known results for both gapped and gapless systems. Numerical results validate the efficiency of our proposed algorithm in various regimes.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC